Wall clock time and date at job start Sun Mar 29 2020 21:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.87414 * 2 1 4 4 C 1.54324 * 109.88282 * 121.01679 * 2 1 3 5 5 H 1.08997 * 110.71905 * 215.76611 * 4 2 1 6 6 C 1.53006 * 110.71968 * 338.85805 * 4 2 1 7 7 F 1.39900 * 109.46764 * 57.55965 * 6 4 2 8 8 F 1.39897 * 109.47129 * 177.55944 * 6 4 2 9 9 F 1.39903 * 109.46814 * 297.56436 * 6 4 2 10 10 C 1.55152 * 103.10436 * 97.31171 * 4 2 1 11 11 C 1.55124 * 101.48521 * 35.28149 * 10 4 2 12 12 N 1.47026 * 109.88182 * 238.82235 * 2 1 3 13 13 C 1.36936 * 125.65078 * 59.56033 * 12 2 1 14 14 H 1.08007 * 119.99456 * 359.97438 * 13 12 2 15 15 C 1.38810 * 120.00201 * 179.97438 * 13 12 2 16 16 N 1.31613 * 119.99843 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47247 * 60.00501 * 17 15 13 19 19 H 1.48504 * 109.47314 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47438 * 300.00210 * 17 15 13 21 21 H 1.08993 * 109.47185 * 298.98798 * 1 2 3 22 22 H 1.09007 * 109.46875 * 58.98649 * 1 2 3 23 23 H 1.08999 * 109.47079 * 178.98151 * 1 2 3 24 24 H 1.09002 * 109.47119 * 181.01599 * 3 2 1 25 25 H 1.08998 * 109.47246 * 301.00883 * 3 2 1 26 26 H 1.08995 * 109.47508 * 61.01439 * 3 2 1 27 27 H 1.09000 * 111.00164 * 153.48859 * 10 4 2 28 28 H 1.09003 * 111.00461 * 277.34080 * 10 4 2 29 29 H 1.08999 * 110.41863 * 204.28705 * 11 10 4 30 30 H 1.09003 * 110.29369 * 82.08970 * 11 10 4 31 31 H 0.97001 * 119.99898 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 2.9639 -0.2790 1.6205 6 6 0.9837 -0.8017 2.3350 7 9 -0.1649 -1.4211 1.8308 8 9 1.4664 -1.5317 3.4265 9 9 0.6704 0.4986 2.7454 10 6 2.3553 -2.1691 0.6989 11 6 2.8568 -1.8509 -0.7342 12 7 2.0300 -0.7158 -1.1829 13 6 1.7713 -0.3828 -2.4857 14 1 1.1507 0.4718 -2.7116 15 6 2.3066 -1.1436 -3.5160 16 7 3.0624 -2.1853 -3.2407 17 14 1.9531 -0.6897 -5.2931 18 1 2.4538 0.6821 -5.5627 19 1 2.6353 -1.6523 -6.1950 20 1 0.4886 -0.7385 -5.5346 21 1 -0.3633 0.4980 0.8989 22 1 -0.3633 0.5295 -0.8808 23 1 -0.3633 -1.0275 -0.0183 24 1 3.1400 1.4312 -0.0182 25 1 1.6758 1.9605 -0.8808 26 1 1.7054 1.9499 0.8989 27 1 3.1316 -2.6573 1.2881 28 1 1.4501 -2.7756 0.6690 29 1 2.7088 -2.7101 -1.3884 30 1 3.9093 -1.5683 -0.7124 31 1 3.4362 -2.7171 -3.9606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306544357.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:55 Heat of formation + Delta-G solvation = -137.963611 kcal Electronic energy + Delta-G solvation = -18579.057138 eV Core-core repulsion = 15252.900883 eV Total energy + Delta-G solvation = -3326.156255 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.16928 -48.61038 -48.52697 -39.99428 -34.93408 -33.07720 -31.68001 -28.36360 -28.11080 -25.80560 -24.45298 -22.23056 -20.80861 -19.46825 -19.24398 -18.32629 -17.83418 -16.79746 -16.28274 -15.67511 -15.40036 -15.33957 -15.13834 -14.93925 -14.73082 -14.40734 -14.17516 -13.74548 -13.67453 -13.19363 -13.13121 -12.75046 -12.64826 -12.47586 -12.25864 -12.04683 -11.80319 -11.57820 -11.44217 -11.35132 -10.69799 -8.88144 -7.73679 -5.16225 1.48777 1.50441 1.56417 1.82092 2.50430 2.85892 2.99111 3.14969 3.38066 3.58856 3.82687 3.92200 4.12765 4.35007 4.46133 4.65286 4.75116 4.80103 4.85095 5.03294 5.08174 5.10525 5.38281 5.50900 5.55449 5.65042 5.83191 6.34070 7.14824 7.81979 8.44292 9.28503 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.042924 B = 0.008575 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.152097 B = 3264.401380 C = 3502.150999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.180 3.820 3 C -0.144 4.144 4 C -0.136 4.136 5 H 0.132 0.868 6 C 0.470 3.530 7 F -0.181 7.181 8 F -0.183 7.183 9 F -0.181 7.181 10 C -0.125 4.125 11 C 0.155 3.845 12 N -0.605 5.605 13 C -0.219 4.219 14 H 0.079 0.921 15 C -0.066 4.066 16 N -0.949 5.949 17 Si 0.972 3.028 18 H -0.281 1.281 19 H -0.296 1.296 20 H -0.280 1.280 21 H 0.066 0.934 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.079 0.921 30 H -0.002 1.002 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 3.047 11.105 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.091 3.909 3 C -0.203 4.203 4 C -0.156 4.156 5 H 0.150 0.850 6 C 0.416 3.584 7 F -0.163 7.163 8 F -0.164 7.164 9 F -0.162 7.162 10 C -0.164 4.164 11 C 0.031 3.969 12 N -0.329 5.329 13 C -0.348 4.348 14 H 0.097 0.903 15 C -0.258 4.258 16 N -0.599 5.599 17 Si 0.801 3.199 18 H -0.207 1.207 19 H -0.222 1.222 20 H -0.207 1.207 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.016 0.984 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.746 2.978 10.909 11.637 hybrid contribution -0.166 0.103 -1.033 1.052 sum -2.912 3.081 9.876 10.747 Atomic orbital electron populations 1.22766 0.96291 1.02002 1.01162 1.20391 0.93206 0.91951 0.85321 1.22151 1.00633 0.96052 1.01454 1.23535 0.97390 1.01529 0.93150 0.85001 1.20257 0.82546 0.73256 0.82360 1.93149 1.53194 1.83367 1.86584 1.93158 1.87938 1.77983 1.57334 1.93133 1.93751 1.37925 1.91434 1.23023 1.02366 0.93191 0.97791 1.21760 0.91479 0.92488 0.91222 1.44712 1.57162 1.30597 1.00407 1.19226 1.24581 1.09192 0.81773 0.90329 1.25486 1.00516 0.98385 1.01442 1.69984 1.38990 1.20245 1.30662 0.85237 0.77486 0.76958 0.80171 1.20683 1.22232 1.20673 0.91533 0.93946 0.92252 0.93318 0.93618 0.90911 0.88238 0.91220 0.90325 0.98388 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.99 6.93 71.98 0.50 -5.50 16 2 C 0.18 6.85 0.80 3.95 0.00 6.85 16 3 C -0.14 -4.99 8.45 71.98 0.61 -4.38 16 4 C -0.14 -4.37 2.45 -9.60 -0.02 -4.39 16 5 H 0.13 3.73 7.85 -2.39 -0.02 3.71 16 6 C 0.47 13.72 2.39 71.98 0.17 13.89 16 7 F -0.18 -5.75 12.51 44.97 0.56 -5.19 16 8 F -0.18 -5.02 17.17 44.97 0.77 -4.25 16 9 F -0.18 -5.05 15.23 44.97 0.69 -4.36 16 10 C -0.13 -4.39 6.38 32.06 0.20 -4.19 16 11 C 0.16 7.24 5.89 86.93 0.51 7.75 16 12 N -0.61 -29.14 2.88 -645.05 -1.86 -30.99 16 13 C -0.22 -11.68 9.44 84.03 0.79 -10.89 16 14 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 15 C -0.07 -3.64 5.49 84.86 0.47 -3.17 16 16 N -0.95 -54.86 10.09 21.65 0.22 -54.64 16 17 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H 0.07 2.12 5.56 -2.39 -0.01 2.11 16 22 H 0.04 1.63 7.93 -2.38 -0.02 1.61 16 23 H 0.06 2.30 6.42 -2.39 -0.02 2.29 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.68 8.05 -2.39 -0.02 1.66 16 26 H 0.07 2.09 7.71 -2.39 -0.02 2.07 16 27 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.07 2.49 7.41 -2.39 -0.02 2.47 16 29 H 0.08 4.23 5.87 -2.39 -0.01 4.22 16 30 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -58.33 254.25 6.77 -51.56 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.13 Total: 4.84 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 3.23 Total: -4.02 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -1.64 Total: -85.63 kcal Atomic # 9 Polarization: -15.81 SS G_CDS: 2.02 Total: -13.79 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -58.33 6.77 -51.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306544357.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.406 kcal (2) G-P(sol) polarization free energy of solvation -58.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds