Wall clock time and date at job start Sun Mar 29 2020 21:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99473 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47206 * 325.00067 * 10 9 7 12 12 C 1.53001 * 109.47275 * 84.99576 * 10 9 7 13 13 C 1.53001 * 109.46920 * 60.00552 * 12 10 9 14 14 C 1.53002 * 109.47248 * 59.99741 * 13 12 10 15 15 C 1.52999 * 109.47179 * 300.00309 * 14 13 12 16 16 C 1.52996 * 109.47500 * 205.00178 * 10 9 7 17 17 H 1.09005 * 109.47462 * 179.97438 * 16 10 9 18 18 C 1.52999 * 109.47156 * 59.99769 * 16 10 9 19 19 F 1.39896 * 109.47088 * 60.00511 * 18 16 10 20 20 F 1.39908 * 109.46975 * 180.02562 * 18 16 10 21 21 F 1.39898 * 109.46966 * 300.00198 * 18 16 10 22 22 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 24 24 H 1.09005 * 109.47015 * 180.02562 * 12 10 9 25 25 H 1.08990 * 109.47196 * 300.00575 * 12 10 9 26 26 H 1.08995 * 109.47605 * 180.02562 * 13 12 10 27 27 H 1.09005 * 109.46687 * 300.00120 * 13 12 10 28 28 H 1.09005 * 109.47184 * 60.00043 * 14 13 12 29 29 H 1.09000 * 109.47442 * 180.02562 * 14 13 12 30 30 H 1.09006 * 109.47222 * 179.97438 * 15 14 13 31 31 H 1.08996 * 109.47396 * 299.99711 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4219 -4.0356 1.4375 13 6 1.1435 -4.1848 2.2649 14 6 0.2663 -5.2801 1.6553 15 6 -0.0976 -4.9012 0.2183 16 6 1.1807 -4.7521 -0.6091 17 1 1.7258 -5.6960 -0.6095 18 6 0.8169 -4.3733 -2.0461 19 9 1.9857 -4.2370 -2.8026 20 9 0.0142 -5.3746 -2.6033 21 9 0.1174 -3.1617 -2.0461 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3881 -0.0002 24 1 2.9672 -4.9794 1.4374 25 1 3.0467 -3.2554 1.8718 26 1 1.4027 -4.4542 3.2888 27 1 0.5986 -3.2407 2.2649 28 1 0.8112 -6.2241 1.6553 29 1 -0.6446 -5.3860 2.2445 30 1 -0.7222 -5.6818 -0.2162 31 1 -0.6426 -3.9573 0.2183 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307200437.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:31 Heat of formation + Delta-G solvation = -158.966980 kcal Electronic energy + Delta-G solvation = -18481.550361 eV Core-core repulsion = 15154.483332 eV Total energy + Delta-G solvation = -3327.067029 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.43141 -47.01205 -46.74638 -38.47755 -33.60206 -31.41761 -30.89285 -28.42835 -24.98447 -23.56370 -21.91434 -21.39542 -18.82847 -17.67070 -17.55525 -17.26542 -16.77523 -14.76411 -14.64186 -14.05045 -13.87291 -13.73679 -13.58644 -13.38002 -13.16771 -12.93296 -12.87698 -12.68745 -12.09903 -11.84881 -11.64593 -11.18875 -10.88897 -10.79920 -10.78372 -10.22117 -10.10593 -10.01813 -9.62672 -9.54175 -8.85977 -6.94230 -5.72834 -3.02039 3.39908 3.46273 3.51062 3.51515 4.38747 4.52490 4.64613 4.70154 5.21428 5.22770 5.39743 5.58942 5.62027 5.63855 5.75223 5.80036 5.94144 6.03084 6.19812 6.25230 6.40673 6.56053 6.63697 6.73127 6.88193 7.03818 7.72525 8.44529 9.56854 10.10616 10.46531 11.49354 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.010728 C = 0.008848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.025882 B = 2609.368213 C = 3163.763093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.905 3.095 4 H -0.292 1.292 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.717 5.717 10 C 0.177 3.823 11 H 0.058 0.942 12 C -0.129 4.129 13 C -0.116 4.116 14 C -0.108 4.108 15 C -0.117 4.117 16 C -0.137 4.137 17 H 0.103 0.897 18 C 0.453 3.547 19 F -0.190 7.190 20 F -0.201 7.201 21 F -0.155 7.155 22 H 0.255 0.745 23 H 0.389 0.611 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -11.688 0.671 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.361 5.361 10 C 0.067 3.933 11 H 0.076 0.924 12 C -0.170 4.170 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.154 4.154 16 C -0.157 4.157 17 H 0.121 0.879 18 C 0.399 3.601 19 F -0.171 7.171 20 F -0.183 7.183 21 F -0.136 7.136 22 H 0.065 0.935 23 H 0.226 0.774 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.306 -11.509 0.618 11.600 hybrid contribution 0.147 0.983 -0.303 1.039 sum 1.453 -10.526 0.315 10.631 Atomic orbital electron populations 1.69656 1.05033 1.25660 1.57324 1.24696 0.95441 0.97497 1.02848 0.86309 0.78541 0.83779 0.77770 1.21792 1.21367 1.21341 1.19128 0.90883 0.83984 1.43048 0.91311 1.42555 1.06014 0.99131 1.88391 1.20205 0.93610 0.85488 0.94037 0.92438 1.22090 0.97183 0.99791 0.97909 1.21450 0.96898 0.99570 0.97460 1.21430 0.99696 0.98605 0.94846 1.21548 0.95195 1.03136 0.95560 1.22781 1.00958 1.02753 0.89240 0.87907 1.20594 0.74469 0.75225 0.89809 1.93125 1.49078 1.95826 1.79083 1.93107 1.75096 1.62114 1.87934 1.93299 1.78998 1.44689 1.96663 0.93525 0.77427 0.93657 0.91431 0.93227 0.90266 0.92558 0.92014 0.91693 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.19 3.00 -53.43 -0.16 -17.35 16 10 C 0.18 3.40 2.42 -67.94 -0.16 3.23 16 11 H 0.06 1.15 7.74 -51.93 -0.40 0.75 16 12 C -0.13 -2.17 5.61 -26.73 -0.15 -2.32 16 13 C -0.12 -1.86 5.77 -26.73 -0.15 -2.01 16 14 C -0.11 -1.49 5.92 -26.73 -0.16 -1.64 16 15 C -0.12 -1.80 4.79 -26.73 -0.13 -1.93 16 16 C -0.14 -2.24 2.05 -90.62 -0.19 -2.43 16 17 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 18 C 0.45 8.35 2.69 37.16 0.10 8.45 16 19 F -0.19 -3.61 16.80 2.25 0.04 -3.57 16 20 F -0.20 -3.40 16.80 2.25 0.04 -3.36 16 21 F -0.16 -3.46 14.26 2.25 0.03 -3.42 16 22 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.39 9.92 4.92 -40.82 -0.20 9.71 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.53 7.60 -51.93 -0.39 1.14 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.89 7.80 -51.93 -0.41 0.48 16 31 H 0.08 1.52 6.18 -51.93 -0.32 1.20 16 LS Contribution 258.70 15.07 3.90 3.90 Total: -1.00 -29.19 258.70 -5.35 -34.54 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -3.81 Total: 4.55 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.09 Total: -5.63 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.56 Total: -44.37 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 0.11 Total: -10.36 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.19 -5.35 -34.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307200437.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.431 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds