Wall clock time and date at job start Sun Mar 29 2020 21:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99473 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47206 * 325.00067 * 10 9 7 12 12 C 1.53001 * 109.47275 * 84.99576 * 10 9 7 13 13 C 1.53001 * 109.46920 * 60.00552 * 12 10 9 14 14 C 1.53002 * 109.47248 * 59.99741 * 13 12 10 15 15 C 1.52999 * 109.47179 * 300.00309 * 14 13 12 16 16 C 1.52996 * 109.47500 * 205.00178 * 10 9 7 17 17 H 1.09005 * 109.47462 * 179.97438 * 16 10 9 18 18 C 1.52999 * 109.47156 * 59.99769 * 16 10 9 19 19 F 1.39896 * 109.47088 * 60.00511 * 18 16 10 20 20 F 1.39908 * 109.46975 * 180.02562 * 18 16 10 21 21 F 1.39898 * 109.46966 * 300.00198 * 18 16 10 22 22 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 24 24 H 1.09005 * 109.47015 * 180.02562 * 12 10 9 25 25 H 1.08990 * 109.47196 * 300.00575 * 12 10 9 26 26 H 1.08995 * 109.47605 * 180.02562 * 13 12 10 27 27 H 1.09005 * 109.46687 * 300.00120 * 13 12 10 28 28 H 1.09005 * 109.47184 * 60.00043 * 14 13 12 29 29 H 1.09000 * 109.47442 * 180.02562 * 14 13 12 30 30 H 1.09006 * 109.47222 * 179.97438 * 15 14 13 31 31 H 1.08996 * 109.47396 * 299.99711 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4219 -4.0356 1.4375 13 6 1.1435 -4.1848 2.2649 14 6 0.2663 -5.2801 1.6553 15 6 -0.0976 -4.9012 0.2183 16 6 1.1807 -4.7521 -0.6091 17 1 1.7258 -5.6960 -0.6095 18 6 0.8169 -4.3733 -2.0461 19 9 1.9857 -4.2370 -2.8026 20 9 0.0142 -5.3746 -2.6033 21 9 0.1174 -3.1617 -2.0461 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3881 -0.0002 24 1 2.9672 -4.9794 1.4374 25 1 3.0467 -3.2554 1.8718 26 1 1.4027 -4.4542 3.2888 27 1 0.5986 -3.2407 2.2649 28 1 0.8112 -6.2241 1.6553 29 1 -0.6446 -5.3860 2.2445 30 1 -0.7222 -5.6818 -0.2162 31 1 -0.6426 -3.9573 0.2183 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307200437.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:30 Heat of formation + Delta-G solvation = -175.748393 kcal Electronic energy + Delta-G solvation = -18482.278058 eV Core-core repulsion = 15154.483332 eV Total energy + Delta-G solvation = -3327.794726 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.92624 -48.46067 -48.33719 -39.87514 -35.44594 -32.95005 -32.44927 -30.06827 -26.55050 -25.42936 -23.26814 -22.75381 -20.29913 -19.28029 -19.03808 -19.03155 -18.27524 -16.57198 -16.21008 -15.60306 -15.34371 -15.24796 -14.99633 -14.91041 -14.80482 -14.53511 -14.44327 -14.17328 -13.48961 -13.40923 -13.01321 -12.77979 -12.65471 -12.60199 -12.19350 -12.07635 -11.78344 -11.43736 -11.19707 -10.95664 -10.79466 -8.92596 -7.87712 -5.14320 1.47338 1.49759 1.55253 1.96998 2.58662 2.98635 3.15128 3.28143 3.46010 3.87035 3.93579 4.10470 4.18734 4.34297 4.41665 4.50619 4.62980 4.74990 4.89586 5.05557 5.13625 5.25451 5.33718 5.38496 5.53874 5.56131 5.72964 6.33501 7.41575 8.16893 8.40686 9.35301 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.010728 C = 0.008848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.025882 B = 2609.368213 C = 3163.763093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.964 3.036 4 H -0.299 1.299 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.232 4.232 8 H 0.072 0.928 9 N -0.726 5.726 10 C 0.168 3.832 11 H 0.048 0.952 12 C -0.122 4.122 13 C -0.115 4.115 14 C -0.100 4.100 15 C -0.115 4.115 16 C -0.127 4.127 17 H 0.146 0.854 18 C 0.448 3.552 19 F -0.195 7.195 20 F -0.190 7.190 21 F -0.184 7.184 22 H 0.247 0.753 23 H 0.379 0.621 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 -13.879 1.274 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.794 3.206 4 H -0.225 1.225 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.365 4.365 8 H 0.090 0.910 9 N -0.369 5.369 10 C 0.059 3.941 11 H 0.066 0.934 12 C -0.162 4.162 13 C -0.152 4.152 14 C -0.137 4.137 15 C -0.153 4.153 16 C -0.147 4.147 17 H 0.163 0.837 18 C 0.394 3.606 19 F -0.177 7.177 20 F -0.172 7.172 21 F -0.166 7.166 22 H 0.056 0.944 23 H 0.215 0.785 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.358 -13.743 1.226 13.997 hybrid contribution -0.126 1.564 -0.525 1.655 sum 2.232 -12.178 0.701 12.401 Atomic orbital electron populations 1.69816 1.06403 1.25637 1.59764 1.25413 0.96204 1.00577 1.04268 0.85346 0.77228 0.80034 0.77950 1.22548 1.20423 1.21015 1.19498 0.91205 0.85334 1.40422 0.91005 1.42680 1.05751 1.00145 1.88360 1.20462 0.93326 0.84563 0.95782 0.93364 1.21979 0.97662 1.00943 0.95630 1.21411 0.96385 0.98529 0.98909 1.21417 1.00246 0.98842 0.93229 1.21560 0.94634 1.02110 0.96979 1.22821 1.01351 1.03154 0.87336 0.83673 1.20994 0.74137 0.74445 0.91053 1.93111 1.49289 1.95840 1.79423 1.93122 1.74823 1.61292 1.87929 1.93247 1.79714 1.46769 1.96842 0.94369 0.78536 0.89648 0.93655 0.91070 0.94691 0.89145 0.90702 0.89348 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.58 13.06 21.65 0.28 -59.29 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.96 46.92 29.55 68.60 2.03 48.95 16 4 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 7 C -0.23 -12.79 9.93 84.03 0.83 -11.95 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.73 -35.28 3.00 -322.96 -0.97 -36.25 16 10 C 0.17 6.20 2.42 44.99 0.11 6.30 16 11 H 0.05 1.87 7.74 -2.39 -0.02 1.85 16 12 C -0.12 -3.81 5.61 30.60 0.17 -3.64 16 13 C -0.11 -3.42 5.77 30.60 0.18 -3.24 16 14 C -0.10 -2.37 5.92 30.59 0.18 -2.19 16 15 C -0.12 -3.28 4.79 30.59 0.15 -3.13 16 16 C -0.13 -3.82 2.05 -10.79 -0.02 -3.85 16 17 H 0.15 3.21 8.14 -2.38 -0.02 3.19 16 18 C 0.45 15.95 2.69 71.98 0.19 16.14 16 19 F -0.20 -7.20 16.80 44.97 0.76 -6.45 16 20 F -0.19 -6.06 16.80 44.97 0.76 -5.30 16 21 F -0.18 -8.34 14.26 44.97 0.64 -7.70 16 22 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 23 H 0.38 19.96 4.92 -92.71 -0.46 19.50 16 24 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.03 1.35 7.60 -2.38 -0.02 1.33 16 28 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.11 7.80 -2.38 -0.02 2.09 16 31 H 0.05 1.71 6.18 -2.39 -0.01 1.69 16 Total: -1.00 -64.61 258.70 6.43 -58.18 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.68 Total: 17.13 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 2.26 Total: -9.26 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -0.69 Total: -95.55 kcal Atomic # 9 Polarization: -21.60 SS G_CDS: 2.15 Total: -19.45 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -64.61 6.43 -58.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307200437.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.570 kcal (2) G-P(sol) polarization free energy of solvation -64.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds