Wall clock time and date at job start Sun Mar 29 2020 21:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48502 * 109.47021 * 269.99821 * 3 2 1 5 5 H 1.48503 * 109.47490 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.47271 * 150.00044 * 3 2 1 7 7 C 1.37875 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99622 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46994 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47057 * 185.13804 * 10 9 7 12 12 C 1.47901 * 110.99718 * 184.29113 * 11 10 9 13 13 C 1.53999 * 107.05735 * 145.84389 * 12 11 10 14 14 C 1.54594 * 105.14164 * 358.77132 * 13 12 11 15 15 H 1.09003 * 110.71874 * 96.57746 * 14 13 12 16 16 C 1.52999 * 110.72934 * 219.68438 * 14 13 12 17 17 F 1.39902 * 109.46639 * 56.14790 * 16 14 13 18 18 F 1.39897 * 109.46918 * 296.14859 * 16 14 13 19 19 F 1.39895 * 109.47386 * 176.14795 * 16 14 13 20 20 C 1.48731 * 111.04238 * 301.86494 * 11 10 9 21 21 H 0.96999 * 120.00028 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.47547 * 59.99832 * 9 7 2 23 23 H 1.09002 * 109.46940 * 299.99525 * 9 7 2 24 24 H 1.09001 * 109.47046 * 65.13516 * 10 9 7 25 25 H 1.08993 * 109.47102 * 305.14099 * 10 9 7 26 26 H 1.09002 * 109.91710 * 26.49485 * 12 11 10 27 27 H 1.09001 * 109.91619 * 265.19361 * 12 11 10 28 28 H 1.08997 * 110.30708 * 239.85679 * 13 12 11 29 29 H 1.09000 * 110.39500 * 117.73219 * 13 12 11 30 30 H 1.09003 * 110.84059 * 81.96785 * 20 11 10 31 31 H 1.09001 * 110.58843 * 318.77382 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5151 -4.9306 -0.1235 12 6 2.4357 -6.0839 -0.0242 13 6 1.6675 -7.2154 0.6836 14 6 0.2767 -6.6208 1.0033 15 1 -0.4470 -6.8992 0.2372 16 6 -0.2003 -7.0716 2.3853 17 9 0.7526 -6.7167 3.3461 18 9 -0.3721 -8.4600 2.3894 19 9 -1.4176 -6.4502 2.6841 20 6 0.5355 -5.0933 0.9837 21 1 -0.4850 0.8400 0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5566 0.8904 24 1 2.8099 -3.6574 0.9329 25 1 2.9310 -3.5539 -0.8398 26 1 3.3137 -5.8090 0.5603 27 1 2.7360 -6.4062 -1.0213 28 1 2.1774 -7.5009 1.6037 29 1 1.5678 -8.0775 0.0240 30 1 -0.3850 -4.5499 0.7701 31 1 0.9672 -4.7642 1.9290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308369108.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:17 Heat of formation + Delta-G solvation = -182.729572 kcal Electronic energy + Delta-G solvation = -17322.600148 eV Core-core repulsion = 13994.502695 eV Total energy + Delta-G solvation = -3328.097452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.14672 -48.64329 -48.61454 -40.03980 -35.76354 -33.99637 -31.25620 -29.89305 -27.01317 -25.73429 -23.21676 -21.92419 -21.54098 -19.56654 -19.23133 -18.77991 -18.27081 -16.95364 -16.50564 -15.75552 -15.60555 -15.53076 -15.24831 -15.09282 -14.91808 -14.77428 -14.72457 -14.36696 -13.79204 -13.52668 -13.29579 -12.87230 -12.65468 -12.57297 -12.41028 -12.26319 -11.91256 -11.74823 -11.33378 -11.24158 -10.56231 -9.40074 -8.20723 -6.32180 1.40751 1.42152 1.53003 1.69100 2.40219 2.66824 2.82173 2.99586 3.13092 3.25899 3.61872 3.68781 4.01187 4.20710 4.31847 4.44000 4.49239 4.69048 4.73275 4.89360 4.89948 5.01202 5.13814 5.43943 5.57151 5.76829 5.91420 6.08932 6.26724 6.84659 7.37237 8.91373 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.039846 B = 0.005586 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.541820 B = 5011.424804 C = 5388.024197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.032 3.968 10 C 0.070 3.930 11 N -0.526 5.526 12 C 0.032 3.968 13 C -0.113 4.113 14 C -0.134 4.134 15 H 0.143 0.857 16 C 0.462 3.538 17 F -0.189 7.189 18 F -0.178 7.178 19 F -0.190 7.190 20 C 0.046 3.954 21 H 0.264 0.736 22 H -0.004 1.004 23 H -0.008 1.008 24 H 0.024 0.976 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -16.338 2.712 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.058 4.058 11 N -0.250 5.250 12 C -0.095 4.095 13 C -0.151 4.151 14 C -0.154 4.154 15 H 0.161 0.839 16 C 0.408 3.592 17 F -0.170 7.170 18 F -0.160 7.160 19 F -0.171 7.171 20 C -0.083 4.083 21 H 0.073 0.927 22 H 0.015 0.985 23 H 0.011 0.989 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.911 -16.226 2.236 16.490 hybrid contribution 0.326 1.130 1.123 1.627 sum 2.236 -15.095 3.359 15.625 Atomic orbital electron populations 1.70105 1.07830 1.27808 1.51417 1.25963 0.95745 1.03353 0.94602 0.85430 0.78614 0.78335 0.78551 1.19647 1.20827 1.18729 1.21625 0.93581 0.92245 1.50937 0.92057 1.18957 0.94270 0.92153 0.95147 1.22183 0.95941 0.88496 0.99144 1.64826 1.15135 1.02746 1.42269 1.23001 0.94723 0.89898 1.01896 1.22481 0.91136 0.99048 1.02458 1.23440 1.02687 0.97260 0.92043 0.83934 1.20484 0.74868 0.74964 0.88910 1.93156 1.64599 1.91785 1.67498 1.93179 1.95377 1.30419 1.96995 1.93185 1.46565 1.82773 1.94595 1.23116 0.97926 0.93267 0.93956 0.92748 0.98540 0.98927 0.95765 0.91057 0.93309 0.88325 0.89861 0.86689 0.90536 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.55 -31.09 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.70 4.65 29.85 0.14 1.84 16 10 C 0.07 2.91 4.78 86.31 0.41 3.32 16 11 N -0.53 -18.07 5.35 -882.45 -4.72 -22.79 16 12 C 0.03 0.80 6.70 86.45 0.58 1.38 16 13 C -0.11 -2.22 6.29 31.47 0.20 -2.02 16 14 C -0.13 -3.18 3.06 -9.59 -0.03 -3.21 16 15 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 16 C 0.46 11.31 2.70 71.98 0.19 11.50 16 17 F -0.19 -5.06 15.77 44.97 0.71 -4.35 16 18 F -0.18 -3.96 17.17 44.97 0.77 -3.19 16 19 F -0.19 -5.25 17.14 44.97 0.77 -4.48 16 20 C 0.05 1.50 4.63 86.61 0.40 1.90 16 21 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 22 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H -0.01 -0.43 7.19 -2.39 -0.02 -0.45 16 24 H 0.02 0.99 7.97 -2.39 -0.02 0.97 16 25 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.05 1.21 7.67 -2.39 -0.02 1.20 16 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.08 1.54 7.26 -2.39 -0.02 1.52 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 2.83 7.79 -2.39 -0.02 2.81 16 31 H 0.04 1.50 7.33 -2.39 -0.02 1.48 16 Total: -1.00 -63.99 268.93 3.56 -60.44 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: 1.12 Total: 0.41 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 2.59 Total: -15.59 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -4.43 Total: -79.50 kcal Atomic # 9 Polarization: -14.27 SS G_CDS: 2.25 Total: -12.02 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -63.99 3.56 -60.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308369108.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.294 kcal (2) G-P(sol) polarization free energy of solvation -63.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds