Wall clock time and date at job start Sun Mar 29 2020 21:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21335 * 119.99796 * 2 1 4 4 C 1.46486 * 119.99686 * 180.28248 * 2 1 3 5 5 C 1.40316 * 120.26440 * 84.69024 * 4 2 1 6 6 F 1.35105 * 120.09114 * 0.02685 * 5 4 2 7 7 C 1.37988 * 119.82377 * 179.78748 * 5 4 2 8 8 C 1.38549 * 120.36469 * 0.47160 * 7 5 4 9 9 C 1.38033 * 120.53225 * 359.78831 * 8 7 5 10 10 C 1.38860 * 120.16774 * 359.97214 * 9 8 7 11 11 N 1.38710 * 120.18166 * 180.02562 * 10 9 8 12 12 C 1.46505 * 120.00121 * 5.39280 * 11 10 9 13 13 C 1.50701 * 109.47208 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99705 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00296 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99617 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00472 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46766 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47119 * 120.00132 * 17 15 13 20 20 H 1.48503 * 109.47054 * 240.00231 * 17 15 13 21 21 H 1.09005 * 109.46895 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47627 * 119.99227 * 1 2 3 23 23 H 1.09002 * 109.47037 * 239.99993 * 1 2 3 24 24 H 1.08000 * 119.82093 * 180.23355 * 7 5 4 25 25 H 1.08000 * 119.73401 * 179.75747 * 8 7 5 26 26 H 1.08002 * 119.91419 * 180.02562 * 9 8 7 27 27 H 0.97000 * 120.00295 * 185.39834 * 11 10 9 28 28 H 1.08999 * 109.47423 * 300.00355 * 12 11 10 29 29 H 1.08997 * 109.47066 * 60.00117 * 12 11 10 30 30 H 0.97000 * 120.00170 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2394 -1.2686 -0.0063 5 6 2.4958 -1.9312 -1.2163 6 9 2.0681 -1.4008 -2.3829 7 6 3.1904 -3.1235 -1.2120 8 6 3.6275 -3.6752 -0.0186 9 6 3.3788 -3.0388 1.1808 10 6 2.6862 -1.8354 1.2018 11 7 2.4365 -1.1954 2.4068 12 6 3.0042 -1.7254 3.6491 13 6 2.5852 -0.8537 4.8048 14 1 1.9590 0.0090 4.6313 15 6 3.0020 -1.1569 6.0836 16 7 3.7657 -2.2066 6.2947 17 14 2.4832 -0.0761 7.5161 18 1 1.6329 1.0339 7.0160 19 1 1.7149 -0.8866 8.4948 20 1 3.6899 0.4839 8.1760 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5137 -0.8900 23 1 -0.3633 -0.5138 0.8900 24 1 3.3910 -3.6316 -2.1437 25 1 4.1668 -4.6108 -0.0267 26 1 3.7245 -3.4775 2.1052 27 1 1.8860 -0.3970 2.4271 28 1 2.6418 -2.7407 3.8101 29 1 4.0917 -1.7351 3.5765 30 1 4.0593 -2.4198 7.1943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309014016.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:26 Heat of formation + Delta-G solvation = -66.333173 kcal Electronic energy + Delta-G solvation = -16194.578851 eV Core-core repulsion = 13289.925161 eV Total energy + Delta-G solvation = -2904.653690 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.75345 -39.71974 -37.99430 -35.18926 -32.79439 -31.41650 -29.26497 -29.17107 -26.60629 -23.63910 -23.09178 -20.96128 -19.84643 -17.76309 -16.93705 -16.34745 -16.03789 -15.57818 -14.86522 -14.80516 -14.76500 -14.38581 -14.13652 -13.60100 -13.36602 -12.67111 -12.41323 -12.23813 -12.01330 -11.74468 -11.47696 -11.34026 -11.03066 -10.93722 -10.30421 -9.71044 -9.59579 -9.49933 -8.68927 -8.49563 -6.94045 -6.31999 -4.38036 1.36241 1.80191 2.03380 3.16602 3.24614 3.28190 3.91230 3.99356 4.25188 4.30016 4.62144 5.06018 5.08444 5.21826 5.32138 5.49004 5.60835 5.67792 5.78992 6.01574 6.18945 6.36221 6.51794 6.72233 6.87525 7.15020 7.22875 7.48740 7.59276 7.77554 7.95319 8.37135 8.70524 9.29029 10.78477 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.031413 B = 0.006510 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.132386 B = 4299.941143 C = 5023.993989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.414 3.586 3 O -0.447 6.447 4 C -0.299 4.299 5 C 0.171 3.829 6 F -0.143 7.143 7 C -0.237 4.237 8 C -0.029 4.029 9 C -0.209 4.209 10 C 0.290 3.710 11 N -0.711 5.711 12 C 0.246 3.754 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.138 0.862 27 H 0.392 0.608 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -2.345 -11.211 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.289 3.711 3 O -0.320 6.320 4 C -0.307 4.307 5 C 0.151 3.849 6 F -0.122 7.122 7 C -0.258 4.258 8 C -0.048 4.048 9 C -0.232 4.232 10 C 0.175 3.825 11 N -0.329 5.329 12 C 0.126 3.874 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.138 4.138 16 N -0.525 5.525 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 H 0.101 0.899 22 H 0.111 0.889 23 H 0.114 0.886 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.226 0.774 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.677 -1.915 -10.828 11.594 hybrid contribution -0.499 0.757 0.647 1.114 sum -4.176 -1.157 -10.181 11.064 Atomic orbital electron populations 1.22311 0.93795 1.04706 1.04790 1.22144 0.91608 0.87403 0.69939 1.90566 1.72529 1.34425 1.34453 1.19594 1.16605 1.01800 0.92654 1.17232 0.96154 0.92357 0.79134 1.91457 1.87924 1.86307 1.46464 1.20553 1.08233 0.97465 0.99577 1.20777 0.94978 0.98150 0.90915 1.20804 1.06813 0.96144 0.99425 1.17619 0.89610 0.90422 0.84840 1.45547 1.52858 1.29350 1.05147 1.19307 0.94142 0.95221 0.78756 1.21189 1.33218 1.12193 0.91575 0.91836 1.24911 0.94548 0.95358 0.98961 1.69939 1.34197 1.26058 1.22274 0.86327 0.78557 0.80251 0.81667 1.19568 1.20643 1.20639 0.89904 0.88923 0.88617 0.85426 0.85315 0.84459 0.77373 0.95312 0.95420 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.51 10.23 36.01 0.37 -2.14 16 2 C 0.41 7.04 5.07 -30.99 -0.16 6.88 16 3 O -0.45 -8.99 17.85 5.51 0.10 -8.89 16 4 C -0.30 -5.20 5.57 -104.86 -0.58 -5.78 16 5 C 0.17 2.73 7.29 -38.89 -0.28 2.45 16 6 F -0.14 -2.22 16.84 2.25 0.04 -2.19 16 7 C -0.24 -3.33 10.00 -39.56 -0.40 -3.72 16 8 C -0.03 -0.41 10.02 -39.54 -0.40 -0.80 16 9 C -0.21 -3.56 9.29 -39.43 -0.37 -3.92 16 10 C 0.29 5.40 6.66 -83.58 -0.56 4.85 16 11 N -0.71 -14.70 5.62 -59.58 -0.33 -15.03 16 12 C 0.25 5.94 4.69 -5.19 -0.02 5.91 16 13 C -0.54 -14.31 9.28 -34.44 -0.32 -14.63 16 14 H 0.06 1.63 7.60 -52.48 -0.40 1.24 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 17 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 22 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 25 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 26 H 0.14 2.41 6.71 -52.49 -0.35 2.06 16 27 H 0.39 7.91 7.20 -40.82 -0.29 7.62 16 28 H 0.03 0.72 7.73 -51.93 -0.40 0.32 16 29 H 0.03 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 274.18 15.07 4.13 4.13 Total: -1.00 -28.83 274.18 -6.28 -35.11 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.12 Total: 4.57 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -2.81 Total: -9.25 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.40 Total: -38.93 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.10 Total: -8.89 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.83 -6.28 -35.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309014016.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.224 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds