Wall clock time and date at job start Sun Mar 29 2020 21:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21335 * 119.99796 * 2 1 4 4 C 1.46486 * 119.99686 * 180.28248 * 2 1 3 5 5 C 1.40316 * 120.26440 * 84.69024 * 4 2 1 6 6 F 1.35105 * 120.09114 * 0.02685 * 5 4 2 7 7 C 1.37988 * 119.82377 * 179.78748 * 5 4 2 8 8 C 1.38549 * 120.36469 * 0.47160 * 7 5 4 9 9 C 1.38033 * 120.53225 * 359.78831 * 8 7 5 10 10 C 1.38860 * 120.16774 * 359.97214 * 9 8 7 11 11 N 1.38710 * 120.18166 * 180.02562 * 10 9 8 12 12 C 1.46505 * 120.00121 * 5.39280 * 11 10 9 13 13 C 1.50701 * 109.47208 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99705 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00296 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99617 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00472 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46766 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47119 * 120.00132 * 17 15 13 20 20 H 1.48503 * 109.47054 * 240.00231 * 17 15 13 21 21 H 1.09005 * 109.46895 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47627 * 119.99227 * 1 2 3 23 23 H 1.09002 * 109.47037 * 239.99993 * 1 2 3 24 24 H 1.08000 * 119.82093 * 180.23355 * 7 5 4 25 25 H 1.08000 * 119.73401 * 179.75747 * 8 7 5 26 26 H 1.08002 * 119.91419 * 180.02562 * 9 8 7 27 27 H 0.97000 * 120.00295 * 185.39834 * 11 10 9 28 28 H 1.08999 * 109.47423 * 300.00355 * 12 11 10 29 29 H 1.08997 * 109.47066 * 60.00117 * 12 11 10 30 30 H 0.97000 * 120.00170 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2394 -1.2686 -0.0063 5 6 2.4958 -1.9312 -1.2163 6 9 2.0681 -1.4008 -2.3829 7 6 3.1904 -3.1235 -1.2120 8 6 3.6275 -3.6752 -0.0186 9 6 3.3788 -3.0388 1.1808 10 6 2.6862 -1.8354 1.2018 11 7 2.4365 -1.1954 2.4068 12 6 3.0042 -1.7254 3.6491 13 6 2.5852 -0.8537 4.8048 14 1 1.9590 0.0090 4.6313 15 6 3.0020 -1.1569 6.0836 16 7 3.7657 -2.2066 6.2947 17 14 2.4832 -0.0761 7.5161 18 1 1.6329 1.0339 7.0160 19 1 1.7149 -0.8866 8.4948 20 1 3.6899 0.4839 8.1760 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5137 -0.8900 23 1 -0.3633 -0.5138 0.8900 24 1 3.3910 -3.6316 -2.1437 25 1 4.1668 -4.6108 -0.0267 26 1 3.7245 -3.4775 2.1052 27 1 1.8860 -0.3970 2.4271 28 1 2.6418 -2.7407 3.8101 29 1 4.0917 -1.7351 3.5765 30 1 4.0593 -2.4198 7.1943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309014016.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:25 Heat of formation + Delta-G solvation = -83.659203 kcal Electronic energy + Delta-G solvation = -16195.330164 eV Core-core repulsion = 13289.925161 eV Total energy + Delta-G solvation = -2905.405004 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.99896 -41.08429 -39.37547 -36.77276 -34.68854 -32.74388 -30.72087 -30.40718 -28.33752 -25.12325 -24.68320 -22.41771 -21.17253 -19.34941 -18.38495 -17.82594 -17.55315 -16.84791 -16.64106 -16.22334 -16.07089 -15.70526 -15.42109 -15.13341 -15.07534 -14.21562 -13.91937 -13.43597 -13.25929 -13.14423 -12.95755 -12.76977 -12.73397 -12.54311 -12.14659 -11.48317 -11.22224 -10.90568 -10.63214 -9.79170 -8.43579 -8.35193 -6.48605 0.07778 0.50442 0.71272 1.38833 1.40238 1.52447 2.28843 2.55257 2.66245 3.00744 3.03460 3.30671 3.91452 4.08598 4.12928 4.40859 4.45608 4.54378 4.55102 4.87029 4.94176 5.06571 5.15341 5.21719 5.25243 5.46494 5.49318 5.78799 5.91830 6.24361 6.30796 6.60898 6.85333 7.23406 8.76287 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.031413 B = 0.006510 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.132386 B = 4299.941143 C = 5023.993989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.410 3.590 3 O -0.489 6.489 4 C -0.307 4.307 5 C 0.161 3.839 6 F -0.140 7.140 7 C -0.216 4.216 8 C -0.015 4.015 9 C -0.224 4.224 10 C 0.264 3.736 11 N -0.722 5.722 12 C 0.269 3.731 13 C -0.563 4.563 14 H 0.064 0.936 15 C 0.016 3.984 16 N -0.920 5.920 17 Si 0.973 3.027 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.277 1.277 21 H 0.093 0.907 22 H 0.116 0.884 23 H 0.105 0.895 24 H 0.165 0.835 25 H 0.169 0.831 26 H 0.124 0.876 27 H 0.392 0.608 28 H 0.012 0.988 29 H 0.000 1.000 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -2.891 -12.322 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.288 3.712 3 O -0.364 6.364 4 C -0.314 4.314 5 C 0.141 3.859 6 F -0.118 7.118 7 C -0.237 4.237 8 C -0.034 4.034 9 C -0.247 4.247 10 C 0.153 3.847 11 N -0.343 5.343 12 C 0.146 3.854 13 C -0.601 4.601 14 H 0.083 0.917 15 C -0.185 4.185 16 N -0.558 5.558 17 Si 0.797 3.203 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.203 1.203 21 H 0.112 0.888 22 H 0.134 0.866 23 H 0.124 0.876 24 H 0.182 0.818 25 H 0.186 0.814 26 H 0.142 0.858 27 H 0.225 0.775 28 H 0.030 0.970 29 H 0.018 0.982 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.342 -2.487 -11.994 12.997 hybrid contribution -0.259 0.834 0.824 1.200 sum -4.601 -1.654 -11.171 12.194 Atomic orbital electron populations 1.22327 0.90304 1.06005 1.06248 1.22798 0.93600 0.86600 0.68196 1.90550 1.73681 1.35519 1.36700 1.19779 1.16696 1.02125 0.92848 1.17420 0.96664 0.93062 0.78723 1.91468 1.87928 1.86404 1.46009 1.21010 1.05529 0.96169 1.00987 1.21182 0.93767 0.98937 0.89490 1.20925 1.07260 0.96124 1.00415 1.17829 0.91065 0.91316 0.84470 1.45162 1.54252 1.30040 1.04894 1.18766 0.92382 0.94216 0.79995 1.21554 1.33328 1.12552 0.92659 0.91742 1.25800 0.94414 0.96603 1.01636 1.70042 1.35153 1.27542 1.23098 0.85280 0.78254 0.78544 0.78229 1.18982 1.19771 1.20296 0.88817 0.86556 0.87636 0.81760 0.81372 0.85850 0.77459 0.96997 0.98231 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.56 10.23 71.24 0.73 -3.83 16 2 C 0.41 13.82 5.07 27.84 0.14 13.97 16 3 O -0.49 -19.94 17.85 -3.20 -0.06 -20.00 16 4 C -0.31 -10.51 5.57 -20.02 -0.11 -10.62 16 5 C 0.16 4.80 7.29 22.72 0.17 4.96 16 6 F -0.14 -4.01 16.84 44.97 0.76 -3.25 16 7 C -0.22 -5.29 10.00 22.28 0.22 -5.06 16 8 C -0.02 -0.38 10.02 22.30 0.22 -0.16 16 9 C -0.22 -7.59 9.29 22.37 0.21 -7.38 16 10 C 0.26 9.97 6.66 38.81 0.26 10.22 16 11 N -0.72 -30.96 5.62 -342.42 -1.92 -32.89 16 12 C 0.27 13.54 4.69 85.63 0.40 13.94 16 13 C -0.56 -30.38 9.28 25.60 0.24 -30.14 16 14 H 0.06 3.38 7.60 -2.91 -0.02 3.35 16 15 C 0.02 0.87 5.46 84.65 0.46 1.33 16 16 N -0.92 -52.04 13.29 21.45 0.28 -51.75 16 17 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H 0.09 2.02 8.12 -2.38 -0.02 2.00 16 22 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 25 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.12 4.49 6.71 -2.91 -0.02 4.47 16 27 H 0.39 16.40 7.20 -92.71 -0.67 15.73 16 28 H 0.01 0.64 7.73 -2.39 -0.02 0.62 16 29 H 0.00 -0.01 8.12 -2.39 -0.02 -0.03 16 30 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -63.30 274.18 4.52 -58.77 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.50 Total: 17.77 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 2.94 Total: -12.77 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -1.64 Total: -84.64 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -20.00 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.76 Total: -3.25 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -63.30 4.52 -58.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309014016.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.886 kcal (2) G-P(sol) polarization free energy of solvation -63.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds