Wall clock time and date at job start Sun Mar 29 2020 21:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48502 * 109.46965 * 240.00152 * 3 2 1 5 5 H 1.48503 * 109.46810 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47509 * 120.00170 * 3 2 1 7 7 C 1.39936 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00349 * 197.88858 * 7 2 1 9 9 C 1.41408 * 119.99749 * 17.89355 * 7 2 1 10 10 C 1.40782 * 120.21161 * 24.44072 * 9 7 2 11 11 C 1.37647 * 119.89734 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32251 * 359.74380 * 11 10 9 13 13 C 1.39295 * 120.42681 * 0.51497 * 12 11 10 14 14 N 1.39683 * 119.95365 * 179.75954 * 13 12 11 15 15 C 1.46493 * 120.00096 * 0.02562 * 14 13 12 16 16 C 1.52995 * 109.47434 * 179.72246 * 15 14 13 17 17 H 1.08998 * 109.47583 * 59.99495 * 16 15 14 18 18 O 1.42903 * 109.47078 * 299.99618 * 16 15 14 19 19 C 1.52996 * 109.47572 * 179.97438 * 16 15 14 20 20 O 1.42906 * 109.47598 * 184.99897 * 19 16 15 21 21 C 1.38316 * 120.09430 * 359.48680 * 13 12 11 22 22 H 0.97001 * 119.99583 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.04772 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.83888 * 180.02562 * 11 10 9 25 25 H 1.07999 * 119.78914 * 180.28186 * 12 11 10 26 26 H 0.97006 * 119.99990 * 179.72150 * 14 13 12 27 27 H 1.09007 * 109.47103 * 299.72181 * 15 14 13 28 28 H 1.09007 * 109.47548 * 59.71948 * 15 14 13 29 29 H 0.96693 * 114.00317 * 300.00057 * 18 16 15 30 30 H 1.09005 * 109.47101 * 304.99784 * 19 16 15 31 31 H 1.09001 * 109.47548 * 64.99674 * 19 16 15 32 32 H 0.96699 * 113.99783 * 179.97438 * 20 19 16 33 33 H 1.08001 * 120.16647 * 180.23269 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0962 1.6963 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2344 0.2878 9 6 1.3521 -2.4070 -0.3752 10 6 0.2216 -2.3615 -1.2129 11 6 -0.4121 -3.5288 -1.5742 12 6 0.0602 -4.7498 -1.1218 13 6 1.1745 -4.8102 -0.2881 14 7 1.6393 -6.0465 0.1663 15 6 0.9554 -7.2785 -0.2343 16 6 1.6645 -8.4818 0.3902 17 1 1.6446 -8.3919 1.4763 18 8 3.0204 -8.5219 -0.0595 19 6 0.9499 -9.7684 -0.0277 20 8 1.5394 -10.8816 0.6472 21 6 1.8247 -3.6481 0.0858 22 1 -0.4849 0.8401 0.0004 23 1 -0.1479 -1.4121 -1.5715 24 1 -1.2791 -3.4928 -2.2172 25 1 -0.4409 -5.6607 -1.4143 26 1 2.4177 -6.0897 0.7437 27 1 -0.0788 -7.2480 0.1087 28 1 0.9754 -7.3685 -1.3205 29 1 3.1144 -8.6015 -1.0186 30 1 -0.1053 -9.7004 0.2370 31 1 1.0463 -9.9042 -1.1049 32 1 1.1349 -11.7326 0.4298 33 1 2.6910 -3.6938 0.7292 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313448211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:33 Heat of formation + Delta-G solvation = -110.895406 kcal Electronic energy + Delta-G solvation = -16092.540985 eV Core-core repulsion = 13309.415236 eV Total energy + Delta-G solvation = -2783.125749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95035 -39.01302 -37.02298 -36.19216 -34.73962 -31.79971 -31.54791 -29.09200 -27.14363 -25.74725 -23.18237 -22.30756 -21.88288 -19.16374 -18.46160 -17.69086 -17.35636 -17.14889 -16.70593 -16.31998 -15.70246 -15.12805 -14.92971 -14.43112 -14.31075 -14.01266 -13.90454 -13.61652 -13.34494 -12.86272 -12.76306 -12.46877 -12.15912 -11.83558 -11.67862 -11.21272 -11.12313 -11.06258 -10.94459 -10.48241 -9.34377 -8.61263 -7.95641 -6.33159 1.05345 1.34120 1.39234 1.50675 1.60663 2.22879 2.55698 2.80197 3.32265 3.48860 3.85046 3.97938 4.06654 4.21813 4.47584 4.49157 4.55415 4.65461 4.74419 5.04881 5.13331 5.16338 5.22856 5.40980 5.57710 5.92882 6.02266 6.19660 6.30544 6.61760 6.74589 6.88286 6.89812 7.01532 7.03210 7.22520 8.36997 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.056695 B = 0.004474 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.750043 B = 6257.104979 C = 6605.103311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.113 3.887 10 C -0.232 4.232 11 C -0.074 4.074 12 C -0.304 4.304 13 C 0.232 3.768 14 N -0.750 5.750 15 C 0.108 3.892 16 C 0.103 3.897 17 H 0.093 0.907 18 O -0.569 6.569 19 C 0.053 3.947 20 O -0.589 6.589 21 C -0.316 4.316 22 H 0.287 0.713 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.395 0.605 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.387 0.613 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.399 0.601 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 -14.246 -2.211 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.110 3.890 10 C -0.253 4.253 11 C -0.093 4.093 12 C -0.327 4.327 13 C 0.131 3.869 14 N -0.383 5.383 15 C -0.017 4.017 16 C 0.043 3.957 17 H 0.111 0.889 18 O -0.376 6.376 19 C -0.026 4.026 20 O -0.398 6.398 21 C -0.340 4.340 22 H 0.098 0.902 23 H 0.115 0.885 24 H 0.129 0.871 25 H 0.135 0.865 26 H 0.229 0.771 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.236 0.764 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.249 0.751 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.476 -13.739 -1.394 13.818 hybrid contribution 0.005 0.448 -0.441 0.629 sum -0.472 -13.292 -1.836 13.426 Atomic orbital electron populations 1.69909 1.09003 1.30475 1.35458 1.26756 0.95491 1.04434 0.91117 0.85265 0.78813 0.75654 0.79992 1.18522 1.18953 1.18485 1.19800 0.98273 0.92773 1.42725 0.91109 1.17696 0.91100 0.92307 0.87883 1.21121 1.01728 0.97061 1.05392 1.20750 0.97929 0.92594 0.98052 1.20176 1.03135 0.97201 1.12145 1.17547 0.92410 0.84892 0.92033 1.44344 1.34730 1.02159 1.57053 1.21795 0.96578 0.83710 0.99636 1.22051 0.82030 0.91883 0.99744 0.88877 1.86589 1.25631 1.96428 1.28982 1.22752 0.96939 0.85926 0.96950 1.86485 1.63482 1.18796 1.71002 1.20529 1.07402 0.92277 1.13797 0.90199 0.88520 0.87113 0.86468 0.77090 0.91499 0.91529 0.76405 0.90783 0.91026 0.75077 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.62 10.96 21.82 0.24 -44.38 16 2 C 0.04 1.95 5.14 85.25 0.44 2.39 16 3 Si 0.98 39.55 29.59 68.60 2.03 41.58 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.51 -28.80 9.05 23.46 0.21 -28.59 16 8 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 9 C 0.11 6.46 5.57 -21.31 -0.12 6.34 16 10 C -0.23 -12.81 8.70 22.75 0.20 -12.61 16 11 C -0.07 -3.55 10.02 22.20 0.22 -3.33 16 12 C -0.30 -13.29 9.32 22.59 0.21 -13.08 16 13 C 0.23 10.46 6.64 38.16 0.25 10.71 16 14 N -0.75 -26.33 5.62 -339.59 -1.91 -28.24 16 15 C 0.11 2.74 4.57 86.38 0.39 3.13 16 16 C 0.10 2.25 3.33 30.59 0.10 2.35 16 17 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 18 O -0.57 -13.98 13.05 -144.37 -1.88 -15.87 16 19 C 0.05 0.82 6.68 71.98 0.48 1.30 16 20 O -0.59 -10.46 13.63 -144.37 -1.97 -12.43 16 21 C -0.32 -16.48 9.63 22.86 0.22 -16.26 16 22 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 23 H 0.10 5.56 6.15 -2.91 -0.02 5.54 16 24 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 25 H 0.12 4.29 6.70 -2.91 -0.02 4.27 16 26 H 0.40 13.70 8.35 -92.70 -0.77 12.93 16 27 H 0.07 1.66 7.95 -2.38 -0.02 1.64 16 28 H 0.07 1.57 7.93 -2.38 -0.02 1.55 16 29 H 0.39 6.85 9.05 -74.06 -0.67 6.18 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.40 2.97 9.12 -74.06 -0.68 2.30 16 33 H 0.09 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -68.96 284.82 -1.85 -70.81 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.97 Total: 36.17 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 2.61 Total: -47.66 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.67 Total: -72.61 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -3.85 Total: -28.29 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -68.96 -1.85 -70.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313448211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.085 kcal (2) G-P(sol) polarization free energy of solvation -68.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds