Wall clock time and date at job start Sun Mar 29 2020 22:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46852 * 2 1 4 4 C 1.50693 * 109.47296 * 240.00091 * 2 1 3 5 5 H 1.08004 * 119.99846 * 239.99804 * 4 2 1 6 6 C 1.37879 * 120.00509 * 59.99816 * 4 2 1 7 7 N 1.31513 * 119.99423 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00578 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47259 * 59.99343 * 8 6 4 10 10 H 1.48500 * 109.47465 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46840 * 299.99681 * 8 6 4 12 12 C 1.53000 * 109.47382 * 119.99442 * 2 1 3 13 13 N 1.46493 * 109.47245 * 300.00624 * 12 2 1 14 14 C 1.34778 * 119.99793 * 179.97438 * 13 12 2 15 15 O 1.21695 * 120.00192 * 359.97438 * 14 13 12 16 16 C 1.46661 * 119.99796 * 179.97438 * 14 13 12 17 17 C 1.36547 * 125.98711 * 179.97438 * 16 14 13 18 18 C 1.40360 * 106.70833 * 180.02562 * 17 16 14 19 19 C 1.35131 * 107.11647 * 359.97438 * 18 17 16 20 20 O 1.33934 * 108.76477 * 0.02562 * 19 18 17 21 21 H 1.09000 * 109.47505 * 300.00001 * 1 2 3 22 22 H 1.08997 * 109.46890 * 60.00497 * 1 2 3 23 23 H 1.09001 * 109.46864 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46971 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.47130 * 299.99743 * 3 2 1 26 26 H 1.09000 * 109.47520 * 60.00012 * 3 2 1 27 27 H 0.97000 * 119.99948 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47315 * 179.97438 * 12 2 1 29 29 H 1.09001 * 109.46782 * 60.00365 * 12 2 1 30 30 H 0.96998 * 120.00266 * 359.97438 * 13 12 2 31 31 H 1.08005 * 126.64485 * 0.02562 * 17 16 14 32 32 H 1.08003 * 126.44294 * 180.02562 * 18 17 16 33 33 H 1.07997 * 125.61851 * 180.26772 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8260 -0.4206 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5759 -1.4812 3.7812 16 6 1.3884 0.2004 4.8669 17 6 1.6411 -0.1584 6.1600 18 6 0.9813 0.7754 6.9741 19 6 0.3630 1.6524 6.1529 20 8 0.6105 1.3025 4.8839 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.7087 1.1612 -3.4844 28 1 3.1300 -0.7215 1.2490 29 1 1.6768 -1.7488 1.2493 30 1 0.9942 0.7583 2.3564 31 1 2.2339 -0.9980 6.4919 32 1 0.9704 0.7905 8.0540 33 1 -0.2295 2.4986 6.4678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315532168.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:01 Heat of formation + Delta-G solvation = -29.600525 kcal Electronic energy + Delta-G solvation = -16697.552704 eV Core-core repulsion = 13917.952166 eV Total energy + Delta-G solvation = -2779.600538 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.63928 -39.09808 -36.40637 -33.53042 -32.93148 -31.04233 -29.73266 -25.79895 -25.72855 -25.08739 -22.68059 -21.72120 -20.11713 -18.91142 -18.29053 -16.35135 -16.28146 -15.75329 -15.15436 -14.68973 -14.51495 -13.80924 -13.02862 -13.00866 -12.92492 -12.79357 -12.65930 -12.20311 -11.39918 -11.20196 -10.85644 -10.73686 -10.39667 -10.23972 -10.08856 -9.94806 -9.64670 -9.33660 -8.81001 -8.80613 -8.45576 -8.32696 -6.02206 -4.12627 1.15987 2.34715 2.77707 3.30460 3.34793 3.37998 3.46227 3.68137 4.40048 4.76126 4.87115 5.10736 5.24484 5.62666 5.73035 5.87430 6.17923 6.28502 6.29304 6.48902 6.70013 6.79628 6.83225 6.95250 6.96088 7.00744 7.33931 7.54947 7.68719 7.94774 8.00025 8.12839 8.36086 8.50507 8.87496 9.53148 10.99254 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.053834 B = 0.005344 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.990655 B = 5238.035261 C = 5566.971179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.129 3.871 13 N -0.702 5.702 14 C 0.589 3.411 15 O -0.532 6.532 16 C -0.065 4.065 17 C -0.133 4.133 18 C -0.226 4.226 19 C -0.016 4.016 20 O -0.162 6.162 21 H 0.006 0.994 22 H 0.086 0.914 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.086 0.914 26 H 0.007 0.993 27 H 0.261 0.739 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.404 0.596 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 3.172 13.934 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.007 3.993 13 N -0.351 5.351 14 C 0.373 3.627 15 O -0.412 6.412 16 C -0.117 4.117 17 C -0.154 4.154 18 C -0.245 4.245 19 C -0.086 4.086 20 O -0.057 6.057 21 H 0.025 0.975 22 H 0.105 0.895 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.105 0.895 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.240 0.760 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.915 2.723 13.521 13.924 hybrid contribution 0.042 -0.059 -0.554 0.559 sum -1.873 2.664 12.966 13.369 Atomic orbital electron populations 1.21844 0.97678 0.99265 1.00191 1.18368 0.92896 0.92821 0.90419 1.21846 0.98650 0.98299 1.00188 1.20928 1.31639 1.12165 0.89819 0.92412 1.24878 0.94824 0.94917 0.98856 1.69796 1.36530 1.22727 1.23361 0.86614 0.79228 0.79779 0.82120 1.20271 1.21331 1.20266 1.21852 0.98438 0.95961 0.83034 1.46292 1.51604 1.31560 1.05658 1.16658 0.80817 0.83612 0.81576 1.90848 1.38849 1.25606 1.85897 1.22463 1.01571 0.90962 0.96737 1.21940 1.01467 1.01121 0.90890 1.21822 1.03789 0.97854 1.01084 1.24365 1.02440 1.01365 0.80417 1.84102 1.54002 1.37761 1.29833 0.97457 0.89493 0.95350 0.95345 0.89504 0.97449 0.92926 0.92223 0.92226 0.76035 0.82398 0.82846 0.77576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 4 C -0.51 -13.25 8.01 -34.44 -0.28 -13.53 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.59 9.35 55.43 0.52 -23.07 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.13 2.77 4.50 -4.05 -0.02 2.75 16 13 N -0.70 -13.22 4.95 -61.63 -0.31 -13.53 16 14 C 0.59 11.00 7.79 -12.86 -0.10 10.90 16 15 O -0.53 -11.39 16.86 5.19 0.09 -11.30 16 16 C -0.06 -1.02 7.13 -36.79 -0.26 -1.28 16 17 C -0.13 -1.79 10.62 -39.39 -0.42 -2.21 16 18 C -0.23 -2.36 10.87 -39.89 -0.43 -2.79 16 19 C -0.02 -0.16 12.08 29.63 0.36 0.20 16 20 O -0.16 -2.24 10.40 5.00 0.05 -2.18 16 21 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 22 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 26 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.40 7.12 5.92 -40.82 -0.24 6.88 16 31 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 32 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 279.81 15.07 4.22 4.22 Total: -1.00 -28.81 279.81 -5.26 -34.07 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.09 Total: 4.65 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.72 Total: -8.50 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.21 Total: -36.60 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.14 Total: -13.48 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.81 -5.26 -34.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315532168.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.467 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds