Wall clock time and date at job start Sun Mar 29 2020 22:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46852 * 2 1 4 4 C 1.50693 * 109.47296 * 240.00091 * 2 1 3 5 5 H 1.08004 * 119.99846 * 239.99804 * 4 2 1 6 6 C 1.37879 * 120.00509 * 59.99816 * 4 2 1 7 7 N 1.31513 * 119.99423 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00578 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47259 * 59.99343 * 8 6 4 10 10 H 1.48500 * 109.47465 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46840 * 299.99681 * 8 6 4 12 12 C 1.53000 * 109.47382 * 119.99442 * 2 1 3 13 13 N 1.46493 * 109.47245 * 300.00624 * 12 2 1 14 14 C 1.34778 * 119.99793 * 179.97438 * 13 12 2 15 15 O 1.21695 * 120.00192 * 359.97438 * 14 13 12 16 16 C 1.46661 * 119.99796 * 179.97438 * 14 13 12 17 17 C 1.36547 * 125.98711 * 179.97438 * 16 14 13 18 18 C 1.40360 * 106.70833 * 180.02562 * 17 16 14 19 19 C 1.35131 * 107.11647 * 359.97438 * 18 17 16 20 20 O 1.33934 * 108.76477 * 0.02562 * 19 18 17 21 21 H 1.09000 * 109.47505 * 300.00001 * 1 2 3 22 22 H 1.08997 * 109.46890 * 60.00497 * 1 2 3 23 23 H 1.09001 * 109.46864 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46971 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.47130 * 299.99743 * 3 2 1 26 26 H 1.09000 * 109.47520 * 60.00012 * 3 2 1 27 27 H 0.97000 * 119.99948 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47315 * 179.97438 * 12 2 1 29 29 H 1.09001 * 109.46782 * 60.00365 * 12 2 1 30 30 H 0.96998 * 120.00266 * 359.97438 * 13 12 2 31 31 H 1.08005 * 126.64485 * 0.02562 * 17 16 14 32 32 H 1.08003 * 126.44294 * 180.02562 * 18 17 16 33 33 H 1.07997 * 125.61851 * 180.26772 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8260 -0.4206 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5759 -1.4812 3.7812 16 6 1.3884 0.2004 4.8669 17 6 1.6411 -0.1584 6.1600 18 6 0.9813 0.7754 6.9741 19 6 0.3630 1.6524 6.1529 20 8 0.6105 1.3025 4.8839 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.7087 1.1612 -3.4844 28 1 3.1300 -0.7215 1.2490 29 1 1.6768 -1.7488 1.2493 30 1 0.9942 0.7583 2.3564 31 1 2.2339 -0.9980 6.4919 32 1 0.9704 0.7905 8.0540 33 1 -0.2295 2.4986 6.4678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315532168.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:01 Heat of formation + Delta-G solvation = -47.813022 kcal Electronic energy + Delta-G solvation = -16698.342457 eV Core-core repulsion = 13917.952166 eV Total energy + Delta-G solvation = -2780.390291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.61187 -40.61538 -38.17717 -35.15306 -34.00283 -32.85474 -30.85780 -27.59365 -27.54623 -26.92126 -23.97510 -22.65522 -21.37672 -20.66243 -19.61279 -17.89145 -17.35776 -17.25415 -16.77425 -16.45490 -16.01579 -15.24961 -14.78590 -14.52108 -14.17574 -14.01350 -13.88434 -13.51980 -13.22424 -13.10973 -12.69299 -12.62870 -12.27814 -12.14203 -11.53596 -11.51460 -11.16442 -11.02175 -10.73255 -10.41006 -10.16697 -9.59982 -8.02113 -6.18327 0.06343 1.45653 1.46480 1.46635 1.53204 1.74093 2.12990 2.31392 2.49935 3.21603 3.77890 3.99133 4.13606 4.38145 4.46884 4.64149 4.67916 4.91630 4.94806 4.97821 5.02650 5.08425 5.16293 5.25944 5.43973 5.49396 5.64202 5.66667 5.89423 6.11341 6.18355 6.41319 6.51644 6.84822 7.04606 7.49378 8.97011 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.053834 B = 0.005344 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.990655 B = 5238.035261 C = 5566.971179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.948 3.052 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.145 3.855 13 N -0.699 5.699 14 C 0.590 3.410 15 O -0.570 6.570 16 C -0.109 4.109 17 C -0.125 4.125 18 C -0.231 4.231 19 C 0.008 3.992 20 O -0.175 6.175 21 H 0.032 0.968 22 H 0.064 0.936 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.410 0.590 31 H 0.159 0.841 32 H 0.189 0.811 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.001 4.265 15.756 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.021 3.979 13 N -0.349 5.349 14 C 0.377 3.623 15 O -0.453 6.453 16 C -0.161 4.161 17 C -0.145 4.145 18 C -0.249 4.249 19 C -0.061 4.061 20 O -0.071 6.071 21 H 0.051 0.949 22 H 0.083 0.917 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.247 0.753 31 H 0.177 0.823 32 H 0.206 0.794 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.695 3.830 15.351 16.050 hybrid contribution 0.236 -0.335 -0.973 1.056 sum -2.458 3.495 14.379 15.000 Atomic orbital electron populations 1.21685 0.97168 0.98794 1.00298 1.18373 0.93269 0.93064 0.90312 1.21687 0.98079 0.97885 1.00295 1.21218 1.31914 1.12301 0.91361 0.93425 1.25470 0.95075 0.95580 1.01036 1.69904 1.36881 1.23319 1.23726 0.85778 0.78625 0.78776 0.79388 1.20209 1.20845 1.20196 1.21435 0.97510 0.95331 0.83588 1.46095 1.51951 1.31689 1.05174 1.16992 0.79924 0.83176 0.82178 1.90810 1.40540 1.27319 1.86609 1.21822 1.05195 0.93250 0.95825 1.22255 1.00377 1.01216 0.90694 1.22222 1.03165 0.96828 1.02700 1.25456 1.00436 1.01422 0.78810 1.84083 1.53927 1.37147 1.31912 0.94903 0.91670 0.96062 0.96056 0.91682 0.94894 0.92982 0.93517 0.93526 0.75252 0.82298 0.79413 0.72740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 4 C -0.53 -28.13 8.01 25.60 0.21 -27.92 16 5 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 6 C 0.03 1.49 5.15 84.66 0.44 1.93 16 7 N -0.90 -48.19 9.35 21.45 0.20 -47.99 16 8 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 C 0.14 6.33 4.50 86.38 0.39 6.71 16 13 N -0.70 -26.36 4.95 -467.11 -2.31 -28.68 16 14 C 0.59 22.21 7.79 86.44 0.67 22.88 16 15 O -0.57 -25.02 16.86 -4.33 -0.07 -25.09 16 16 C -0.11 -3.30 7.13 24.08 0.17 -3.13 16 17 C -0.12 -3.12 10.62 22.39 0.24 -2.88 16 18 C -0.23 -3.88 10.87 22.07 0.24 -3.64 16 19 C 0.01 0.13 12.08 67.10 0.81 0.94 16 20 O -0.18 -4.39 10.40 -5.01 -0.05 -4.44 16 21 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 22 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.06 3.27 6.07 -2.38 -0.01 3.25 16 26 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 27 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.41 14.13 5.92 -92.71 -0.55 13.58 16 31 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.26 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -63.15 279.81 4.66 -58.50 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.57 Total: 15.74 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.30 Total: -12.68 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -2.11 Total: -76.67 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.13 Total: -29.53 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -63.15 4.66 -58.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315532168.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.682 kcal (2) G-P(sol) polarization free energy of solvation -63.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds