Wall clock time and date at job start Sun Mar 29 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46898 * 2 1 4 4 C 1.50701 * 109.47457 * 239.99944 * 2 1 3 5 5 H 1.08002 * 120.00102 * 239.99852 * 4 2 1 6 6 C 1.37876 * 119.99850 * 59.99779 * 4 2 1 7 7 N 1.31514 * 120.00360 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00074 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47256 * 59.99950 * 8 6 4 10 10 H 1.48499 * 109.47484 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47251 * 300.00040 * 8 6 4 12 12 C 1.53003 * 109.47099 * 119.99913 * 2 1 3 13 13 N 1.46497 * 109.47109 * 300.00215 * 12 2 1 14 14 C 1.34773 * 120.00174 * 180.02562 * 13 12 2 15 15 O 1.21618 * 120.00100 * 359.97438 * 14 13 12 16 16 C 1.47376 * 120.00312 * 179.97438 * 14 13 12 17 17 C 1.47019 * 127.19544 * 180.28123 * 16 14 13 18 18 C 1.34177 * 105.95809 * 180.17417 * 17 16 14 19 19 O 1.34214 * 109.12112 * 359.60541 * 18 17 16 20 20 C 1.33655 * 110.90867 * 0.26473 * 19 18 17 21 21 H 1.08993 * 109.47221 * 299.99703 * 1 2 3 22 22 H 1.09003 * 109.46816 * 60.00236 * 1 2 3 23 23 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47040 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47194 * 299.99532 * 3 2 1 26 26 H 1.08993 * 109.46942 * 60.00126 * 3 2 1 27 27 H 0.96994 * 120.00765 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46665 * 180.02562 * 12 2 1 29 29 H 1.08996 * 109.46757 * 60.00211 * 12 2 1 30 30 H 0.97003 * 120.00150 * 359.97438 * 13 12 2 31 31 H 1.08005 * 127.02536 * 0.08201 * 17 16 14 32 32 H 1.08002 * 125.44341 * 179.87398 * 18 17 16 33 33 H 1.08001 * 125.79936 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1203 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8261 -0.4207 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5768 -1.4796 3.7812 16 6 1.3868 0.2043 4.8728 17 6 1.6478 -0.1538 6.2746 18 6 0.9969 0.7563 7.0152 19 8 0.3807 1.6268 6.2004 20 6 0.5993 1.3172 4.9187 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 0.7089 1.1613 -3.4844 28 1 3.1300 -0.7208 1.2494 29 1 1.6767 -1.7489 1.2492 30 1 0.9942 0.7582 2.3564 31 1 2.2409 -0.9814 6.6349 32 1 0.9760 0.7864 8.0946 33 1 0.2171 1.8564 4.0645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315610450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:04 Heat of formation + Delta-G solvation = -30.594775 kcal Electronic energy + Delta-G solvation = -16643.257424 eV Core-core repulsion = 13863.613772 eV Total energy + Delta-G solvation = -2779.643652 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.51907 -39.01773 -36.33222 -33.38455 -32.72501 -30.97486 -29.67087 -25.79454 -25.75077 -25.10542 -22.90269 -21.44752 -19.85802 -18.91629 -18.20609 -16.23320 -16.14572 -15.66166 -15.06338 -14.82065 -14.55067 -14.37312 -13.11546 -12.97844 -12.88833 -12.77965 -12.34807 -12.20009 -11.41194 -11.20618 -10.86208 -10.73848 -10.40926 -10.22042 -9.79039 -9.68798 -9.65419 -9.30451 -8.86170 -8.81771 -8.45903 -8.31834 -6.03141 -4.13238 1.42440 2.09145 2.89504 3.30007 3.34257 3.37707 3.69900 3.71324 4.39727 4.60200 4.76124 5.16288 5.23672 5.55821 5.65012 5.88863 6.20153 6.28332 6.31337 6.48958 6.75815 6.78953 6.90058 6.93052 6.99529 6.99879 7.33260 7.53364 7.68055 7.98982 8.02529 8.13924 8.37005 8.68003 8.87195 9.52615 10.98327 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.053921 B = 0.005253 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.153172 B = 5329.015712 C = 5657.107237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.712 5.712 14 C 0.574 3.426 15 O -0.549 6.549 16 C -0.227 4.227 17 C -0.166 4.166 18 C -0.048 4.048 19 O -0.177 6.177 20 C 0.015 3.985 21 H 0.005 0.995 22 H 0.086 0.914 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.086 0.914 26 H 0.005 0.995 27 H 0.261 0.739 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.395 0.605 31 H 0.158 0.842 32 H 0.207 0.793 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 3.297 13.595 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.362 5.362 14 C 0.360 3.640 15 O -0.428 6.428 16 C -0.231 4.231 17 C -0.186 4.186 18 C -0.114 4.114 19 O -0.073 6.073 20 C -0.055 4.055 21 H 0.024 0.976 22 H 0.105 0.895 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.105 0.895 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.230 0.770 31 H 0.175 0.825 32 H 0.223 0.777 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.065 2.933 13.589 14.055 hybrid contribution 0.187 -0.264 -0.942 0.996 sum -1.878 2.670 12.647 13.062 Atomic orbital electron populations 1.21836 0.97735 0.99269 1.00033 1.18368 0.92823 0.92787 0.90554 1.21838 0.98688 0.98314 1.00034 1.20940 1.31568 1.12140 0.89853 0.92450 1.24872 0.94832 0.94912 0.98843 1.69784 1.36630 1.22724 1.23359 0.86623 0.79245 0.79795 0.82132 1.20276 1.21328 1.20269 1.21757 0.98266 0.95855 0.83120 1.46181 1.52549 1.31659 1.05815 1.17323 0.80422 0.83831 0.82377 1.90749 1.38737 1.26450 1.86888 1.21763 1.06338 0.99908 0.95112 1.22802 1.03267 1.01791 0.90704 1.23894 0.99421 0.91710 0.96343 1.83774 1.59550 1.47847 1.16105 1.24505 0.99058 0.96976 0.84995 0.97593 0.89535 0.95353 0.95355 0.89530 0.97596 0.92935 0.92539 0.92532 0.76983 0.82468 0.77689 0.77197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.20 8.01 -34.44 -0.28 -13.47 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.39 9.35 55.43 0.52 -22.88 16 8 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 N -0.71 -12.88 4.95 -61.40 -0.30 -13.18 16 14 C 0.57 10.64 7.81 -12.54 -0.10 10.55 16 15 O -0.55 -12.20 16.98 5.26 0.09 -12.11 16 16 C -0.23 -3.36 6.31 -103.28 -0.65 -4.01 16 17 C -0.17 -2.12 11.01 -37.46 -0.41 -2.53 16 18 C -0.05 -0.47 12.03 29.30 0.35 -0.12 16 19 O -0.18 -1.98 10.52 7.65 0.08 -1.90 16 20 C 0.01 0.17 11.61 30.08 0.35 0.52 16 21 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 22 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 25 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 26 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 27 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.40 6.23 5.13 -40.82 -0.21 6.02 16 31 H 0.16 1.89 8.06 -52.48 -0.42 1.46 16 32 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.21 1.82 7.47 -52.49 -0.39 1.43 16 LS Contribution 278.98 15.07 4.20 4.20 Total: -1.00 -30.05 278.98 -4.78 -34.83 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.02 Total: 4.06 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.33 Total: -8.63 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.21 Total: -36.06 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.17 Total: -14.01 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.05 -4.78 -34.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315610450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.231 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds