Wall clock time and date at job start Sun Mar 29 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46898 * 2 1 4 4 C 1.50701 * 109.47457 * 239.99944 * 2 1 3 5 5 H 1.08002 * 120.00102 * 239.99852 * 4 2 1 6 6 C 1.37876 * 119.99850 * 59.99779 * 4 2 1 7 7 N 1.31514 * 120.00360 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00074 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47256 * 59.99950 * 8 6 4 10 10 H 1.48499 * 109.47484 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47251 * 300.00040 * 8 6 4 12 12 C 1.53003 * 109.47099 * 119.99913 * 2 1 3 13 13 N 1.46497 * 109.47109 * 300.00215 * 12 2 1 14 14 C 1.34773 * 120.00174 * 180.02562 * 13 12 2 15 15 O 1.21618 * 120.00100 * 359.97438 * 14 13 12 16 16 C 1.47376 * 120.00312 * 179.97438 * 14 13 12 17 17 C 1.47019 * 127.19544 * 180.28123 * 16 14 13 18 18 C 1.34177 * 105.95809 * 180.17417 * 17 16 14 19 19 O 1.34214 * 109.12112 * 359.60541 * 18 17 16 20 20 C 1.33655 * 110.90867 * 0.26473 * 19 18 17 21 21 H 1.08993 * 109.47221 * 299.99703 * 1 2 3 22 22 H 1.09003 * 109.46816 * 60.00236 * 1 2 3 23 23 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47040 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47194 * 299.99532 * 3 2 1 26 26 H 1.08993 * 109.46942 * 60.00126 * 3 2 1 27 27 H 0.96994 * 120.00765 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46665 * 180.02562 * 12 2 1 29 29 H 1.08996 * 109.46757 * 60.00211 * 12 2 1 30 30 H 0.97003 * 120.00150 * 359.97438 * 13 12 2 31 31 H 1.08005 * 127.02536 * 0.08201 * 17 16 14 32 32 H 1.08002 * 125.44341 * 179.87398 * 18 17 16 33 33 H 1.08001 * 125.79936 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1203 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8261 -0.4207 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5768 -1.4796 3.7812 16 6 1.3868 0.2043 4.8728 17 6 1.6478 -0.1538 6.2746 18 6 0.9969 0.7563 7.0152 19 8 0.3807 1.6268 6.2004 20 6 0.5993 1.3172 4.9187 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 0.7089 1.1613 -3.4844 28 1 3.1300 -0.7208 1.2494 29 1 1.6767 -1.7489 1.2492 30 1 0.9942 0.7582 2.3564 31 1 2.2409 -0.9814 6.6349 32 1 0.9760 0.7864 8.0946 33 1 0.2171 1.8564 4.0645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315610450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:03 Heat of formation + Delta-G solvation = -50.113987 kcal Electronic energy + Delta-G solvation = -16644.103841 eV Core-core repulsion = 13863.613772 eV Total energy + Delta-G solvation = -2780.490069 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.43533 -40.54382 -38.09696 -35.07801 -33.82662 -32.69675 -30.70399 -27.56012 -27.52743 -26.92936 -24.22763 -22.34152 -21.14910 -20.64290 -19.39630 -17.89919 -17.18700 -17.07874 -16.68814 -16.34335 -16.09532 -15.60014 -14.83026 -14.51069 -14.47024 -13.98645 -13.80785 -13.32323 -13.20232 -13.07372 -12.68219 -12.62222 -12.25195 -12.13183 -11.49010 -11.34489 -11.04262 -10.83267 -10.70969 -10.39266 -10.02823 -9.69042 -8.02000 -6.17551 0.39044 1.16952 1.44747 1.46038 1.52500 2.04270 2.29908 2.36604 2.50020 3.21704 3.68896 3.81410 4.15639 4.42533 4.49519 4.58887 4.71075 4.79582 4.98200 5.02158 5.05272 5.13643 5.19312 5.33700 5.36606 5.55504 5.67431 5.67648 6.01639 6.15731 6.21009 6.43614 6.63377 6.85686 7.25234 7.49988 8.96763 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.053921 B = 0.005253 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.153172 B = 5329.015712 C = 5657.107237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.148 3.852 13 N -0.703 5.703 14 C 0.574 3.426 15 O -0.596 6.596 16 C -0.268 4.268 17 C -0.199 4.199 18 C -0.019 4.019 19 O -0.174 6.174 20 C 0.042 3.958 21 H 0.039 0.961 22 H 0.064 0.936 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.261 0.739 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.409 0.591 31 H 0.154 0.846 32 H 0.253 0.747 33 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 4.704 15.074 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.024 3.976 13 N -0.354 5.354 14 C 0.363 3.637 15 O -0.479 6.479 16 C -0.273 4.273 17 C -0.219 4.219 18 C -0.084 4.084 19 O -0.068 6.068 20 C -0.029 4.029 21 H 0.058 0.942 22 H 0.083 0.917 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.246 0.754 31 H 0.172 0.828 32 H 0.268 0.732 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.084 4.372 15.079 16.001 hybrid contribution 0.482 -0.680 -1.326 1.566 sum -2.602 3.693 13.754 14.477 Atomic orbital electron populations 1.21684 0.96916 0.98753 1.00589 1.18372 0.93418 0.93128 0.90055 1.21686 0.97958 0.97709 1.00590 1.21232 1.31870 1.12235 0.91603 0.93856 1.25421 0.95112 0.95584 1.00860 1.69882 1.36861 1.23174 1.23703 0.85833 0.78600 0.78814 0.79643 1.20351 1.20718 1.20339 1.21320 0.97083 0.95155 0.84026 1.45942 1.52681 1.31861 1.04913 1.17847 0.79354 0.83222 0.83233 1.90715 1.40947 1.28683 1.87558 1.21565 1.09359 1.01989 0.94344 1.22952 1.05253 1.03355 0.90339 1.24650 0.96536 0.89460 0.97779 1.83838 1.59209 1.47822 1.15942 1.24966 0.96612 0.95247 0.86034 0.94165 0.91710 0.96373 0.96376 0.91705 0.94168 0.92970 0.94310 0.94303 0.75379 0.82846 0.73158 0.74195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 4 C -0.53 -28.07 8.01 25.60 0.21 -27.87 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.32 16 6 C 0.03 1.58 5.15 84.65 0.44 2.02 16 7 N -0.90 -47.30 9.35 21.45 0.20 -47.10 16 8 Si 0.94 42.48 29.54 68.60 2.03 44.50 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.15 6.40 4.50 86.38 0.39 6.79 16 13 N -0.70 -24.80 4.95 -466.42 -2.31 -27.11 16 14 C 0.57 21.19 7.81 86.65 0.68 21.86 16 15 O -0.60 -27.25 16.98 -4.09 -0.07 -27.32 16 16 C -0.27 -7.53 6.31 -18.99 -0.12 -7.65 16 17 C -0.20 -4.76 11.01 23.65 0.26 -4.50 16 18 C -0.02 -0.30 12.03 66.89 0.80 0.50 16 19 O -0.17 -3.16 10.52 4.46 0.05 -3.11 16 20 C 0.04 0.84 11.61 67.39 0.78 1.62 16 21 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 22 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 23 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 26 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 27 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.41 11.86 5.13 -92.71 -0.48 11.38 16 31 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.25 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.24 3.07 7.47 -2.91 -0.02 3.05 16 Total: -1.00 -66.27 278.98 5.11 -61.16 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.64 Total: 13.32 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.57 Total: -14.35 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.11 Total: -74.21 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.02 Total: -30.43 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -66.27 5.11 -61.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315610450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.049 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds