Wall clock time and date at job start Sun Mar 29 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47476 * 2 1 4 4 C 1.50702 * 109.46790 * 119.99826 * 2 1 3 5 5 O 1.33797 * 125.79260 * 300.18947 * 4 2 1 6 6 C 1.34195 * 110.85402 * 180.28912 * 5 4 2 7 7 C 1.34236 * 109.07998 * 359.72171 * 6 5 4 8 8 C 1.36206 * 125.78827 * 120.00022 * 4 2 1 9 9 C 1.47703 * 127.16600 * 359.97438 * 8 4 2 10 10 O 1.35249 * 120.00047 * 179.70824 * 9 8 4 11 11 N 1.30173 * 119.99684 * 359.71154 * 9 8 4 12 12 C 1.46495 * 119.99630 * 185.35631 * 11 9 8 13 13 C 1.50700 * 109.46880 * 115.33753 * 12 11 9 14 14 H 1.08003 * 120.00109 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99912 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47476 * 89.99457 * 17 15 13 19 19 H 1.48501 * 109.46880 * 209.99636 * 17 15 13 20 20 H 1.48504 * 109.47103 * 329.99271 * 17 15 13 21 21 H 1.09002 * 109.47520 * 300.00117 * 1 2 3 22 22 H 1.09005 * 109.46930 * 60.00338 * 1 2 3 23 23 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47085 * 239.99570 * 2 1 3 25 25 H 1.09002 * 109.47018 * 300.00219 * 3 2 1 26 26 H 1.09002 * 109.46842 * 59.99467 * 3 2 1 27 27 H 1.08997 * 109.46981 * 179.97438 * 3 2 1 28 28 H 1.08003 * 125.46265 * 179.70552 * 6 5 4 29 29 H 1.08005 * 127.01605 * 179.97438 * 7 6 5 30 30 H 0.96698 * 113.99852 * 55.31112 * 10 9 8 31 31 H 1.09001 * 109.47134 * 235.33313 * 12 11 9 32 32 H 1.09002 * 109.47278 * 355.33754 * 12 11 9 33 33 H 0.97000 * 119.99970 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.7785 -0.3578 2.4960 6 6 2.3797 -1.1953 3.3550 7 6 3.0453 -2.1321 2.6613 8 6 2.8185 -1.8225 1.2430 9 6 3.3395 -2.5602 0.0743 10 8 4.1182 -3.6511 0.2553 11 7 3.0492 -2.1602 -1.1300 12 6 3.4665 -2.9565 -2.2867 13 6 2.2478 -3.4749 -3.0057 14 1 1.2610 -3.2356 -2.6375 15 6 2.3924 -4.2557 -4.1329 16 7 3.5939 -4.5475 -4.5809 17 14 0.8817 -4.8977 -5.0245 18 1 0.4639 -3.9180 -6.0593 19 1 1.2030 -6.1949 -5.6720 20 1 -0.2230 -5.0907 -4.0509 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4424 0.0005 28 1 2.3355 -1.1265 4.4319 29 1 3.6290 -2.9470 3.0635 30 1 3.7157 -4.3342 0.8087 31 1 4.0508 -2.3341 -2.9645 32 1 4.0741 -3.7963 -1.9496 33 1 3.6957 -5.0965 -5.3741 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331142709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:05 Heat of formation + Delta-G solvation = -23.906891 kcal Electronic energy + Delta-G solvation = -16728.304518 eV Core-core repulsion = 13948.950874 eV Total energy + Delta-G solvation = -2779.353644 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.25646 -37.93176 -35.30406 -33.76714 -32.71884 -31.88062 -29.02952 -27.02052 -26.92306 -23.76441 -22.40564 -21.32915 -20.13554 -19.18253 -17.54056 -16.30646 -15.88293 -15.51317 -15.03188 -14.74303 -14.23884 -14.06781 -13.86876 -12.94052 -12.85165 -12.46603 -12.39192 -11.98435 -11.74122 -11.31826 -10.97526 -10.95640 -10.83279 -10.70466 -10.56973 -10.18425 -9.98630 -9.57113 -8.75036 -8.65369 -8.22204 -7.75066 -6.05594 -4.09276 1.79180 2.25918 3.11321 3.29802 3.35073 3.38739 3.58585 4.41065 4.53406 4.70613 4.98252 5.24151 5.27896 5.33060 5.40363 5.57193 5.69623 5.83049 5.90284 6.01762 6.12485 6.17351 6.38918 6.41096 6.47248 6.63341 6.93492 7.35955 7.46911 7.51968 7.88631 8.13379 8.33567 8.81640 9.04383 9.54799 11.04367 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.006895 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.535148 B = 4060.094397 C = 4586.824534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.142 4.142 4 C 0.064 3.936 5 O -0.181 6.181 6 C -0.049 4.049 7 C -0.195 4.195 8 C -0.169 4.169 9 C 0.349 3.651 10 O -0.516 6.516 11 N -0.488 5.488 12 C 0.171 3.829 13 C -0.509 4.509 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.151 0.849 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.201 0.799 29 H 0.152 0.848 30 H 0.384 0.616 31 H 0.043 0.957 32 H 0.022 0.978 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 6.982 14.152 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.058 4.058 3 C -0.199 4.199 4 C 0.010 3.990 5 O -0.077 6.077 6 C -0.116 4.116 7 C -0.216 4.216 8 C -0.173 4.173 9 C 0.122 3.878 10 O -0.317 6.317 11 N -0.216 5.216 12 C 0.045 3.955 13 C -0.548 4.548 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.729 3.271 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.168 0.832 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.218 0.782 29 H 0.170 0.830 30 H 0.238 0.762 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.656 7.982 13.191 15.845 hybrid contribution -0.367 -1.734 0.120 1.777 sum -4.024 6.247 13.310 15.244 Atomic orbital electron populations 1.21800 0.94201 1.02289 1.01666 1.20489 0.96035 0.96044 0.93225 1.21799 1.01426 0.94929 1.01736 1.22738 0.97603 0.95246 0.83395 1.83732 1.59858 1.48618 1.15493 1.23695 0.99941 0.92583 0.95337 1.22750 1.04748 1.02420 0.91636 1.20107 1.05716 0.99420 0.92007 1.20882 0.90864 0.85871 0.90224 1.84910 1.44679 1.28821 1.73271 1.72355 1.16163 1.33508 0.99530 1.19803 0.97001 0.92388 0.86328 1.21031 0.92358 1.30932 1.10494 0.92113 1.24985 0.96253 0.96148 0.97045 1.69968 1.21435 1.38025 1.23882 0.86438 0.82657 0.78228 0.79758 1.20442 1.21135 1.19866 0.93067 0.91709 0.92314 0.83168 0.91722 0.93014 0.92439 0.78232 0.83037 0.76184 0.93878 0.96014 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.17 37.16 0.34 -1.65 16 2 C -0.04 -0.64 3.24 -91.77 -0.30 -0.93 16 3 C -0.14 -1.91 9.18 37.16 0.34 -1.57 16 4 C 0.06 1.05 5.88 -35.04 -0.21 0.84 16 5 O -0.18 -2.61 10.53 7.34 0.08 -2.53 16 6 C -0.05 -0.59 12.03 29.32 0.35 -0.23 16 7 C -0.20 -2.64 11.05 -37.48 -0.41 -3.06 16 8 C -0.17 -2.96 6.32 -103.25 -0.65 -3.61 16 9 C 0.35 7.27 7.80 -14.39 -0.11 7.16 16 10 O -0.52 -10.18 11.88 -17.44 -0.21 -10.39 16 11 N -0.49 -11.63 7.67 -60.46 -0.46 -12.09 16 12 C 0.17 4.77 6.09 -5.20 -0.03 4.74 16 13 C -0.51 -14.85 9.39 -34.44 -0.32 -15.17 16 14 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.15 2.89 5.25 -51.93 -0.27 2.61 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.38 5.58 9.06 45.56 0.41 5.99 16 31 H 0.04 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.02 0.64 6.74 -51.93 -0.35 0.29 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 290.11 15.07 4.37 4.37 Total: -1.00 -33.10 290.11 -5.17 -38.27 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -3.56 Total: 3.72 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.10 Total: -11.91 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.27 Total: -38.38 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.13 Total: -12.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.10 -5.17 -38.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331142709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.358 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds