Wall clock time and date at job start Sun Mar 29 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47476 * 2 1 4 4 C 1.50702 * 109.46790 * 119.99826 * 2 1 3 5 5 O 1.33797 * 125.79260 * 300.18947 * 4 2 1 6 6 C 1.34195 * 110.85402 * 180.28912 * 5 4 2 7 7 C 1.34236 * 109.07998 * 359.72171 * 6 5 4 8 8 C 1.36206 * 125.78827 * 120.00022 * 4 2 1 9 9 C 1.47703 * 127.16600 * 359.97438 * 8 4 2 10 10 O 1.35249 * 120.00047 * 179.70824 * 9 8 4 11 11 N 1.30173 * 119.99684 * 359.71154 * 9 8 4 12 12 C 1.46495 * 119.99630 * 185.35631 * 11 9 8 13 13 C 1.50700 * 109.46880 * 115.33753 * 12 11 9 14 14 H 1.08003 * 120.00109 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99912 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47476 * 89.99457 * 17 15 13 19 19 H 1.48501 * 109.46880 * 209.99636 * 17 15 13 20 20 H 1.48504 * 109.47103 * 329.99271 * 17 15 13 21 21 H 1.09002 * 109.47520 * 300.00117 * 1 2 3 22 22 H 1.09005 * 109.46930 * 60.00338 * 1 2 3 23 23 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47085 * 239.99570 * 2 1 3 25 25 H 1.09002 * 109.47018 * 300.00219 * 3 2 1 26 26 H 1.09002 * 109.46842 * 59.99467 * 3 2 1 27 27 H 1.08997 * 109.46981 * 179.97438 * 3 2 1 28 28 H 1.08003 * 125.46265 * 179.70552 * 6 5 4 29 29 H 1.08005 * 127.01605 * 179.97438 * 7 6 5 30 30 H 0.96698 * 113.99852 * 55.31112 * 10 9 8 31 31 H 1.09001 * 109.47134 * 235.33313 * 12 11 9 32 32 H 1.09002 * 109.47278 * 355.33754 * 12 11 9 33 33 H 0.97000 * 119.99970 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.7785 -0.3578 2.4960 6 6 2.3797 -1.1953 3.3550 7 6 3.0453 -2.1321 2.6613 8 6 2.8185 -1.8225 1.2430 9 6 3.3395 -2.5602 0.0743 10 8 4.1182 -3.6511 0.2553 11 7 3.0492 -2.1602 -1.1300 12 6 3.4665 -2.9565 -2.2867 13 6 2.2478 -3.4749 -3.0057 14 1 1.2610 -3.2356 -2.6375 15 6 2.3924 -4.2557 -4.1329 16 7 3.5939 -4.5475 -4.5809 17 14 0.8817 -4.8977 -5.0245 18 1 0.4639 -3.9180 -6.0593 19 1 1.2030 -6.1949 -5.6720 20 1 -0.2230 -5.0907 -4.0509 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4424 0.0005 28 1 2.3355 -1.1265 4.4319 29 1 3.6290 -2.9470 3.0635 30 1 3.7157 -4.3342 0.8087 31 1 4.0508 -2.3341 -2.9645 32 1 4.0741 -3.7963 -1.9496 33 1 3.6957 -5.0965 -5.3741 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331142709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:04 Heat of formation + Delta-G solvation = -49.015687 kcal Electronic energy + Delta-G solvation = -16729.393317 eV Core-core repulsion = 13948.950874 eV Total energy + Delta-G solvation = -2780.442443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.40970 -39.58960 -36.52952 -35.73451 -34.31282 -33.50156 -30.38189 -28.89451 -28.01733 -25.60962 -23.70952 -22.79784 -21.55414 -20.57786 -18.87090 -18.45178 -17.16599 -17.02607 -16.61779 -16.13717 -16.03787 -15.49231 -15.16071 -14.52485 -14.05185 -13.95419 -13.75270 -13.51216 -13.12910 -13.01197 -12.72263 -12.48429 -12.33817 -12.12328 -12.09024 -11.86466 -11.76974 -11.19083 -10.77262 -10.18338 -10.05187 -9.23628 -8.26393 -6.41080 0.41511 1.16668 1.37142 1.39962 1.51147 1.98687 2.09986 2.38168 3.00786 3.10678 3.47051 3.67125 4.06366 4.16195 4.24894 4.51996 4.55066 4.79296 4.79587 4.83290 4.94495 4.99678 5.12564 5.17611 5.24904 5.27820 5.36066 5.48255 5.60665 5.67415 6.02867 6.21270 6.66586 6.77016 7.11323 7.33841 8.83851 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.006895 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.535148 B = 4060.094397 C = 4586.824534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 C -0.135 4.135 4 C 0.066 3.934 5 O -0.179 6.179 6 C -0.027 4.027 7 C -0.204 4.204 8 C -0.208 4.208 9 C 0.370 3.630 10 O -0.531 6.531 11 N -0.522 5.522 12 C 0.189 3.811 13 C -0.531 4.531 14 H 0.057 0.943 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.978 3.022 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.265 1.265 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.041 0.959 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.254 0.746 29 H 0.177 0.823 30 H 0.408 0.592 31 H 0.007 0.993 32 H -0.007 1.007 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 7.381 16.315 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 C -0.192 4.192 4 C 0.012 3.988 5 O -0.075 6.075 6 C -0.092 4.092 7 C -0.224 4.224 8 C -0.211 4.211 9 C 0.143 3.857 10 O -0.335 6.335 11 N -0.251 5.251 12 C 0.061 3.939 13 C -0.569 4.569 14 H 0.075 0.925 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.801 3.199 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.190 1.190 21 H 0.090 0.910 22 H 0.093 0.907 23 H 0.061 0.939 24 H 0.132 0.868 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.270 0.730 29 H 0.194 0.806 30 H 0.266 0.734 31 H 0.025 0.975 32 H 0.011 0.989 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.318 8.378 15.391 18.313 hybrid contribution 0.214 -1.840 -0.341 1.883 sum -5.104 6.539 15.049 17.184 Atomic orbital electron populations 1.21754 0.92703 1.01673 1.03175 1.20429 0.97332 0.97016 0.91933 1.21752 1.00644 0.93560 1.03241 1.22788 0.96893 0.94735 0.84420 1.83763 1.59934 1.49053 1.14776 1.24704 0.97142 0.90411 0.96906 1.23032 1.05902 1.04052 0.89377 1.20188 1.07673 1.00563 0.92700 1.21452 0.88154 0.85504 0.90593 1.84828 1.44993 1.29531 1.74137 1.72431 1.19657 1.33518 0.99448 1.19327 0.95932 0.91005 0.87613 1.21300 0.92558 1.31677 1.11363 0.92466 1.25997 0.99806 0.95977 0.97650 1.70100 1.23942 1.38527 1.24455 0.85263 0.78326 0.77853 0.78446 1.19311 1.20113 1.18956 0.91032 0.90696 0.93947 0.86782 0.90587 0.91101 0.93605 0.73011 0.80582 0.73447 0.97545 0.98933 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.17 71.98 0.66 -3.01 16 2 C -0.05 -1.55 3.24 -11.54 -0.04 -1.58 16 3 C -0.13 -3.50 9.18 71.98 0.66 -2.84 16 4 C 0.07 2.10 5.88 25.21 0.15 2.24 16 5 O -0.18 -4.60 10.53 3.34 0.04 -4.57 16 6 C -0.03 -0.51 12.03 66.91 0.81 0.29 16 7 C -0.20 -4.91 11.05 23.63 0.26 -4.65 16 8 C -0.21 -7.12 6.32 -18.97 -0.12 -7.24 16 9 C 0.37 15.81 7.80 87.44 0.68 16.50 16 10 O -0.53 -21.37 11.88 -85.32 -1.01 -22.38 16 11 N -0.52 -26.25 7.67 -459.32 -3.52 -29.77 16 12 C 0.19 11.19 6.09 85.63 0.52 11.72 16 13 C -0.53 -32.18 9.39 25.60 0.24 -31.93 16 14 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 15 C 0.00 0.26 5.46 84.66 0.46 0.72 16 16 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 17 Si 0.98 45.30 29.54 68.60 2.03 47.33 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.11 4.58 5.25 -2.39 -0.01 4.57 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.25 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.41 11.77 9.06 -74.06 -0.67 11.10 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H -0.01 -0.46 6.74 -2.39 -0.02 -0.48 16 33 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -75.17 290.11 2.54 -72.63 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.45 Total: 14.18 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 4.28 Total: -19.78 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -3.24 Total: -87.41 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.98 Total: -26.94 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.17 2.54 -72.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331142709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.614 kcal (2) G-P(sol) polarization free energy of solvation -75.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds