Wall clock time and date at job start Sun Mar 29 2020 22:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34308 * 125.79103 * 2 1 4 4 C 1.34303 * 109.47653 * 180.23728 * 3 2 1 5 5 C 1.34509 * 108.42447 * 359.77817 * 4 3 2 6 6 C 1.34512 * 125.79409 * 179.84462 * 2 1 3 7 7 C 1.50709 * 126.57652 * 0.03048 * 6 2 1 8 8 N 1.46901 * 109.46798 * 79.71640 * 7 6 2 9 9 C 1.47962 * 110.99645 * 170.00157 * 8 7 6 10 10 C 1.53939 * 86.17954 * 222.41370 * 9 8 7 11 11 O 1.42901 * 113.73443 * 269.25769 * 10 9 8 12 12 C 1.50699 * 113.73181 * 138.07765 * 10 9 8 13 13 H 1.07999 * 120.00015 * 4.91121 * 12 10 9 14 14 C 1.37879 * 119.99686 * 184.90847 * 12 10 9 15 15 N 1.31521 * 119.99972 * 13.82310 * 14 12 10 16 16 Si 1.86792 * 119.99875 * 193.81760 * 14 12 10 17 17 H 1.48504 * 109.47216 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47601 * 300.00327 * 16 14 12 19 19 H 1.48506 * 109.47155 * 60.00602 * 16 14 12 20 20 C 1.47957 * 111.00157 * 70.64161 * 8 7 6 21 21 H 1.08998 * 109.46917 * 270.15721 * 1 2 3 22 22 H 1.08998 * 109.47154 * 30.15638 * 1 2 3 23 23 H 1.09000 * 109.46902 * 150.16045 * 1 2 3 24 24 H 1.08002 * 125.78771 * 179.79322 * 4 3 2 25 25 H 1.07999 * 126.58100 * 180.02562 * 5 4 3 26 26 H 1.08996 * 109.47024 * 319.71239 * 7 6 2 27 27 H 1.08995 * 109.46678 * 199.71322 * 7 6 2 28 28 H 1.08999 * 113.76019 * 108.09949 * 9 8 7 29 29 H 1.09000 * 113.85879 * 336.74722 * 9 8 7 30 30 H 0.96693 * 113.99776 * 171.47023 * 11 10 9 31 31 H 0.97001 * 119.99982 * 5.87544 * 15 14 12 32 32 H 1.08994 * 113.76072 * 23.25977 * 20 8 7 33 33 H 1.09001 * 113.75391 * 251.89917 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2925 1.0894 0.0000 4 6 3.5814 0.7122 -0.0052 5 6 3.6309 -0.6320 -0.0037 6 6 2.2937 -1.0911 0.0030 7 6 1.8373 -2.5274 0.0062 8 7 1.4540 -2.9223 -1.3558 9 6 1.2290 -4.3823 -1.4409 10 6 1.9918 -4.3180 -2.7765 11 8 1.1494 -4.1004 -3.9101 12 6 2.9629 -5.4530 -2.9756 13 1 3.0129 -6.2540 -2.2528 14 6 3.7876 -5.4689 -4.0804 15 7 3.9290 -4.3845 -4.8111 16 14 4.7041 -7.0305 -4.5394 17 1 5.5178 -6.7870 -5.7576 18 1 5.5957 -7.4283 -3.4205 19 1 3.7278 -8.1175 -4.8049 20 6 2.6426 -3.0345 -2.2297 21 1 -0.3633 0.0028 1.0276 22 1 -0.3633 0.8886 -0.5162 23 1 -0.3633 -0.8914 -0.5113 24 1 4.4336 1.3756 -0.0097 25 1 4.5213 -1.2433 -0.0065 26 1 0.9799 -2.6346 0.6706 27 1 2.6491 -3.1657 0.3547 28 1 0.1803 -4.6596 -1.5471 29 1 1.7437 -4.9535 -0.6682 30 1 1.6310 -3.9297 -4.7310 31 1 3.5221 -3.5513 -4.5262 32 1 3.5715 -3.2099 -1.6873 33 1 2.7231 -2.2349 -2.9661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335271531.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:16 Heat of formation + Delta-G solvation = -25.890694 kcal Electronic energy + Delta-G solvation = -17079.435151 eV Core-core repulsion = 14299.995483 eV Total energy + Delta-G solvation = -2779.439668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.54237 -40.96268 -36.85609 -34.60870 -34.29473 -32.74820 -30.37928 -27.83257 -27.16675 -26.49171 -24.13173 -22.40033 -20.89624 -20.46468 -19.73412 -17.90803 -17.36159 -17.00780 -16.58428 -16.21991 -15.61748 -15.53286 -15.13987 -14.62026 -14.03533 -13.79477 -13.76048 -13.65009 -13.63580 -13.11079 -12.90003 -12.61666 -12.43728 -12.39698 -12.05171 -11.94422 -11.10746 -10.80666 -10.66163 -10.21350 -9.63705 -9.24784 -8.68347 -6.48145 0.79049 1.54224 1.57658 1.59585 1.81017 2.12618 2.52383 2.91451 3.09688 3.70319 3.77052 3.89143 4.03477 4.06230 4.19292 4.32055 4.45880 4.52505 4.58535 4.69474 4.73229 4.85307 4.86815 4.91854 5.05105 5.18787 5.32889 5.39724 5.56623 5.79687 6.05730 6.11914 6.22239 6.44531 6.99437 7.29578 8.62673 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036667 B = 0.006588 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.448055 B = 4249.219195 C = 4556.840814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.008 4.008 3 O -0.187 6.187 4 C -0.041 4.041 5 C -0.228 4.228 6 C -0.194 4.194 7 C 0.092 3.908 8 N -0.469 5.469 9 C 0.027 3.973 10 C 0.196 3.804 11 O -0.573 6.573 12 C -0.638 4.638 13 H 0.055 0.945 14 C -0.009 4.009 15 N -0.919 5.919 16 Si 1.111 2.889 17 H -0.282 1.282 18 H -0.271 1.271 19 H -0.274 1.274 20 C 0.006 3.994 21 H 0.099 0.901 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.240 0.760 25 H 0.144 0.856 26 H 0.095 0.905 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.367 0.633 31 H 0.262 0.738 32 H 0.052 0.948 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 7.248 10.181 12.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 O -0.084 6.084 4 C -0.108 4.108 5 C -0.247 4.247 6 C -0.195 4.195 7 C -0.036 4.036 8 N -0.191 5.191 9 C -0.102 4.102 10 C 0.155 3.845 11 O -0.380 6.380 12 C -0.676 4.676 13 H 0.073 0.927 14 C -0.209 4.209 15 N -0.557 5.557 16 Si 0.932 3.068 17 H -0.208 1.208 18 H -0.196 1.196 19 H -0.199 1.199 20 C -0.124 4.124 21 H 0.118 0.882 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.256 0.744 25 H 0.162 0.838 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.215 0.785 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.349 7.261 9.369 12.084 hybrid contribution 0.542 0.135 0.913 1.070 sum -1.807 7.396 10.282 12.794 Atomic orbital electron populations 1.20389 0.83209 1.04545 1.04425 1.22716 0.95172 0.83345 1.04606 1.83992 1.17463 1.35017 1.71917 1.24551 0.84641 0.95859 1.05717 1.21947 0.97675 0.95996 1.09121 1.20166 0.93557 0.95679 1.10114 1.20933 0.99642 0.90907 0.92124 1.68540 1.27503 1.15276 1.07805 1.23951 1.00997 0.89196 0.96040 1.20384 0.88211 0.91539 0.84327 1.86204 1.37839 1.94101 1.19809 1.22643 1.22488 1.09782 1.12657 0.92708 1.27209 0.95916 1.04956 0.92855 1.70977 1.43423 1.00551 1.40708 0.83022 0.75554 0.71598 0.76595 1.20761 1.19606 1.19919 1.24360 0.92598 0.98995 0.96420 0.88231 0.89686 0.89590 0.74439 0.83807 0.88668 0.94275 0.89781 0.90395 0.78531 0.92676 0.92966 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 10.21 71.24 0.73 -0.89 16 2 C -0.01 -0.23 7.32 24.83 0.18 -0.05 16 3 O -0.19 -5.46 10.65 -2.53 -0.03 -5.49 16 4 C -0.04 -1.07 12.09 66.97 0.81 -0.27 16 5 C -0.23 -7.10 10.87 22.19 0.24 -6.86 16 6 C -0.19 -6.46 5.20 -19.94 -0.10 -6.56 16 7 C 0.09 3.17 4.84 85.56 0.41 3.58 16 8 N -0.47 -19.28 6.25 -915.44 -5.72 -25.00 16 9 C 0.03 1.14 7.36 86.41 0.64 1.78 16 10 C 0.20 9.96 1.08 -10.89 -0.01 9.95 16 11 O -0.57 -30.65 13.45 -148.98 -2.00 -32.65 16 12 C -0.64 -34.88 8.56 25.60 0.22 -34.66 16 13 H 0.05 2.96 7.85 -2.91 -0.02 2.93 16 14 C -0.01 -0.47 5.26 84.65 0.45 -0.02 16 15 N -0.92 -52.48 12.80 21.45 0.27 -52.20 16 16 Si 1.11 48.04 29.93 68.60 2.05 50.09 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.01 0.29 5.90 86.41 0.51 0.80 16 21 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.09 2.23 7.87 -2.39 -0.02 2.21 16 24 H 0.24 3.90 8.06 -2.91 -0.02 3.87 16 25 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 26 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.04 1.38 7.69 -2.39 -0.02 1.36 16 28 H 0.08 3.47 8.14 -2.39 -0.02 3.46 16 29 H 0.08 3.16 7.75 -2.39 -0.02 3.14 16 30 H 0.37 19.70 6.95 -74.06 -0.52 19.19 16 31 H 0.26 15.02 5.52 -92.71 -0.51 14.51 16 32 H 0.05 2.55 7.73 -2.39 -0.02 2.53 16 33 H 0.05 2.36 7.79 -2.39 -0.02 2.34 16 Total: -1.00 -64.08 280.93 -0.50 -64.58 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.85 Total: 33.87 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 4.07 Total: -33.20 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -5.45 Total: -77.21 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -2.03 Total: -38.14 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.05 Total: 50.09 kcal Total: -64.08 -0.50 -64.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335271531.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.694 kcal (2) G-P(sol) polarization free energy of solvation -64.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds