Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 119.99812 * 2 1 4 4 H 1.48500 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47243 * 299.99678 * 3 2 1 6 6 H 1.48496 * 109.47238 * 60.00173 * 3 2 1 7 7 C 1.38950 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99400 * 199.45153 * 7 2 1 9 9 N 1.37093 * 120.00208 * 19.45107 * 7 2 1 10 10 C 1.34780 * 120.00248 * 41.64952 * 9 7 2 11 11 O 1.21296 * 119.99452 * 3.60358 * 10 9 7 12 12 C 1.50697 * 120.00287 * 183.33501 * 10 9 7 13 13 H 1.08998 * 110.73622 * 305.81777 * 12 10 9 14 14 C 1.54981 * 110.83536 * 182.16128 * 12 10 9 15 15 C 1.54277 * 103.75102 * 204.70527 * 14 12 10 16 16 C 1.51446 * 106.85374 * 23.12504 * 15 14 12 17 17 O 1.20752 * 126.34284 * 180.33869 * 16 15 14 18 18 C 1.51847 * 107.31480 * 0.35636 * 16 15 14 19 19 C 1.46502 * 119.99996 * 221.64484 * 9 7 2 20 20 C 1.52996 * 117.49949 * 14.25030 * 19 9 7 21 21 C 1.52993 * 60.00202 * 252.51247 * 20 19 9 22 22 H 0.97002 * 120.00332 * 4.87166 * 1 2 3 23 23 H 1.09008 * 110.56815 * 323.27387 * 14 12 10 24 24 H 1.08999 * 110.56882 * 86.13410 * 14 12 10 25 25 H 1.08999 * 109.98235 * 263.77359 * 15 14 12 26 26 H 1.09002 * 110.01527 * 142.49601 * 15 14 12 27 27 H 1.09003 * 110.44146 * 217.47272 * 18 16 15 28 28 H 1.08997 * 110.44319 * 94.94971 * 18 16 15 29 29 H 1.09002 * 115.54575 * 159.96080 * 19 9 7 30 30 H 1.09010 * 117.49784 * 359.97438 * 20 19 9 31 31 H 1.08996 * 117.49943 * 145.02056 * 20 19 9 32 32 H 1.09008 * 117.49827 * 252.51143 * 21 20 19 33 33 H 1.08997 * 117.50504 * 107.49073 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0426 -1.2301 0.3109 9 7 1.3821 -2.3566 -0.3964 10 6 0.5639 -2.3454 -1.4674 11 8 0.4330 -1.3314 -2.1199 12 6 -0.1835 -3.5944 -1.8577 13 1 0.5031 -4.4315 -1.9837 14 6 -1.0153 -3.3597 -3.1442 15 6 -2.1438 -4.4072 -3.0474 16 6 -2.2918 -4.7591 -1.5818 17 8 -3.0725 -5.5511 -1.1113 18 6 -1.2769 -3.9311 -0.8135 19 6 1.6017 -3.6011 0.3446 20 6 2.2571 -3.4963 1.7231 21 6 3.0478 -4.0605 0.5412 22 1 -0.4851 0.8370 -0.0713 23 1 -1.4287 -2.3511 -3.1542 24 1 -0.4062 -3.5338 -4.0311 25 1 -1.8769 -5.2962 -3.6188 26 1 -3.0759 -3.9875 -3.4257 27 1 -0.8544 -4.5117 0.0065 28 1 -1.7376 -3.0179 -0.4368 29 1 0.8434 -4.3716 0.2047 30 1 2.5253 -2.5012 2.0786 31 1 1.9299 -4.1977 2.4906 32 1 3.2409 -5.1333 0.5310 33 1 3.8358 -3.4369 0.1191 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335511410.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = -39.283583 kcal Electronic energy + Delta-G solvation = -17413.816276 eV Core-core repulsion = 14633.795848 eV Total energy + Delta-G solvation = -2780.020427 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73169 -38.42581 -36.36998 -35.12973 -32.76412 -31.01095 -28.97381 -26.79934 -24.89414 -21.96704 -21.60941 -20.83150 -19.29880 -18.79200 -16.83744 -16.13675 -15.86455 -15.11854 -14.71238 -14.43252 -14.00518 -13.74019 -13.46008 -13.15173 -12.95692 -12.30634 -11.76583 -11.46575 -11.28755 -11.03897 -10.93765 -10.88254 -10.81914 -10.47755 -10.32288 -10.17787 -10.04140 -9.73572 -9.29613 -8.73018 -8.04657 -7.08080 -6.14550 -3.89561 2.12770 3.29170 3.38776 3.40091 4.00567 4.22024 4.41270 4.71181 4.79888 4.81276 5.12872 5.31250 5.34922 5.48047 5.58789 5.64965 5.71576 5.77111 5.85138 5.87939 6.08479 6.14427 6.22377 6.25570 6.45662 6.50965 6.70067 6.75773 6.94022 7.59120 7.68280 8.21995 9.02259 9.12056 9.62776 10.23998 10.92842 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.009308 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.623393 B = 3007.487245 C = 3637.852155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.343 4.343 8 H 0.078 0.922 9 N -0.426 5.426 10 C 0.492 3.508 11 O -0.531 6.531 12 C -0.106 4.106 13 H 0.088 0.912 14 C -0.098 4.098 15 C -0.184 4.184 16 C 0.372 3.628 17 O -0.460 6.460 18 C -0.170 4.170 19 C 0.068 3.932 20 C -0.179 4.179 21 C -0.206 4.206 22 H 0.264 0.736 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -7.950 -2.012 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.470 4.470 8 H 0.096 0.904 9 N -0.146 5.146 10 C 0.279 3.721 11 O -0.409 6.409 12 C -0.128 4.128 13 H 0.106 0.894 14 C -0.136 4.136 15 C -0.221 4.221 16 C 0.249 3.751 17 O -0.335 6.335 18 C -0.208 4.208 19 C -0.038 4.038 20 C -0.217 4.217 21 C -0.245 4.245 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.631 -7.691 -2.054 7.986 hybrid contribution 0.464 0.798 0.108 0.930 sum -0.167 -6.893 -1.947 7.165 Atomic orbital electron populations 1.69867 1.06469 1.27703 1.42637 1.25130 0.94760 0.99293 0.94556 0.86243 0.79919 0.83007 0.77458 1.19631 1.20654 1.21281 1.18914 0.94798 0.84585 1.48692 0.90428 1.42787 1.42991 1.05843 1.22941 1.19430 0.83028 0.88229 0.81375 1.90518 1.64253 1.33697 1.52421 1.22164 0.96154 0.99013 0.95430 0.89393 1.22130 0.95055 0.99477 0.96939 1.22701 1.01703 1.01305 0.96404 1.25139 0.79778 0.77763 0.92439 1.90372 1.35145 1.30456 1.77486 1.22948 0.96712 1.02124 0.99023 1.21887 0.94053 0.91380 0.96457 1.23094 1.04567 1.02801 0.91197 1.23270 0.97122 0.99680 1.04441 0.92614 0.89216 0.90853 0.88797 0.88643 0.88985 0.86570 0.87340 0.87514 0.89905 0.89849 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.80 11.70 55.50 0.65 -23.15 16 2 C 0.07 1.99 4.35 -17.47 -0.08 1.92 16 3 Si 0.91 21.51 29.60 -169.99 -5.03 16.48 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.34 -9.08 7.69 -14.94 -0.11 -9.19 16 8 H 0.08 2.01 7.40 -52.49 -0.39 1.62 16 9 N -0.43 -10.15 2.88 -107.73 -0.31 -10.46 16 10 C 0.49 11.67 6.22 -10.99 -0.07 11.60 16 11 O -0.53 -14.73 13.47 5.54 0.07 -14.66 16 12 C -0.11 -1.87 2.31 -89.73 -0.21 -2.07 16 13 H 0.09 1.37 7.80 -51.93 -0.41 0.96 16 14 C -0.10 -1.54 5.98 -25.02 -0.15 -1.69 16 15 C -0.18 -2.40 6.69 -26.85 -0.18 -2.58 16 16 C 0.37 5.80 7.88 -28.10 -0.22 5.58 16 17 O -0.46 -8.27 17.99 6.01 0.11 -8.17 16 18 C -0.17 -2.85 5.61 -26.32 -0.15 -3.00 16 19 C 0.07 1.31 5.84 -67.93 -0.40 0.91 16 20 C -0.18 -3.17 9.83 -26.74 -0.26 -3.43 16 21 C -0.21 -3.46 10.10 -26.73 -0.27 -3.73 16 22 H 0.26 7.29 8.32 -40.82 -0.34 6.95 16 23 H 0.09 1.63 7.39 -51.92 -0.38 1.24 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.09 1.45 6.20 -51.93 -0.32 1.13 16 28 H 0.12 2.23 8.04 -51.93 -0.42 1.81 16 29 H 0.11 1.83 4.70 -51.93 -0.24 1.59 16 30 H 0.11 2.12 7.04 -51.92 -0.37 1.76 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 33 H 0.09 1.67 7.97 -51.93 -0.41 1.26 16 LS Contribution 275.03 15.07 4.14 4.14 Total: -1.00 -31.56 275.03 -6.65 -38.21 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.19 Total: 3.28 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.09 Total: -5.68 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.34 Total: -33.61 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.18 Total: -22.82 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.56 -6.65 -38.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335511410.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.074 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds