Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 119.99812 * 2 1 4 4 H 1.48500 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47243 * 299.99678 * 3 2 1 6 6 H 1.48496 * 109.47238 * 60.00173 * 3 2 1 7 7 C 1.38950 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99400 * 199.45153 * 7 2 1 9 9 N 1.37093 * 120.00208 * 19.45107 * 7 2 1 10 10 C 1.34780 * 120.00248 * 41.64952 * 9 7 2 11 11 O 1.21296 * 119.99452 * 3.60358 * 10 9 7 12 12 C 1.50697 * 120.00287 * 183.33501 * 10 9 7 13 13 H 1.08998 * 110.73622 * 305.81777 * 12 10 9 14 14 C 1.54981 * 110.83536 * 182.16128 * 12 10 9 15 15 C 1.54277 * 103.75102 * 204.70527 * 14 12 10 16 16 C 1.51446 * 106.85374 * 23.12504 * 15 14 12 17 17 O 1.20752 * 126.34284 * 180.33869 * 16 15 14 18 18 C 1.51847 * 107.31480 * 0.35636 * 16 15 14 19 19 C 1.46502 * 119.99996 * 221.64484 * 9 7 2 20 20 C 1.52996 * 117.49949 * 14.25030 * 19 9 7 21 21 C 1.52993 * 60.00202 * 252.51247 * 20 19 9 22 22 H 0.97002 * 120.00332 * 4.87166 * 1 2 3 23 23 H 1.09008 * 110.56815 * 323.27387 * 14 12 10 24 24 H 1.08999 * 110.56882 * 86.13410 * 14 12 10 25 25 H 1.08999 * 109.98235 * 263.77359 * 15 14 12 26 26 H 1.09002 * 110.01527 * 142.49601 * 15 14 12 27 27 H 1.09003 * 110.44146 * 217.47272 * 18 16 15 28 28 H 1.08997 * 110.44319 * 94.94971 * 18 16 15 29 29 H 1.09002 * 115.54575 * 159.96080 * 19 9 7 30 30 H 1.09010 * 117.49784 * 359.97438 * 20 19 9 31 31 H 1.08996 * 117.49943 * 145.02056 * 20 19 9 32 32 H 1.09008 * 117.49827 * 252.51143 * 21 20 19 33 33 H 1.08997 * 117.50504 * 107.49073 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0426 -1.2301 0.3109 9 7 1.3821 -2.3566 -0.3964 10 6 0.5639 -2.3454 -1.4674 11 8 0.4330 -1.3314 -2.1199 12 6 -0.1835 -3.5944 -1.8577 13 1 0.5031 -4.4315 -1.9837 14 6 -1.0153 -3.3597 -3.1442 15 6 -2.1438 -4.4072 -3.0474 16 6 -2.2918 -4.7591 -1.5818 17 8 -3.0725 -5.5511 -1.1113 18 6 -1.2769 -3.9311 -0.8135 19 6 1.6017 -3.6011 0.3446 20 6 2.2571 -3.4963 1.7231 21 6 3.0478 -4.0605 0.5412 22 1 -0.4851 0.8370 -0.0713 23 1 -1.4287 -2.3511 -3.1542 24 1 -0.4062 -3.5338 -4.0311 25 1 -1.8769 -5.2962 -3.6188 26 1 -3.0759 -3.9875 -3.4257 27 1 -0.8544 -4.5117 0.0065 28 1 -1.7376 -3.0179 -0.4368 29 1 0.8434 -4.3716 0.2047 30 1 2.5253 -2.5012 2.0786 31 1 1.9299 -4.1977 2.4906 32 1 3.2409 -5.1333 0.5310 33 1 3.8358 -3.4369 0.1191 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335511410.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = -59.090933 kcal Electronic energy + Delta-G solvation = -17414.675187 eV Core-core repulsion = 14633.795848 eV Total energy + Delta-G solvation = -2780.879338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17986 -39.98805 -37.91718 -36.63433 -34.67004 -32.84547 -30.32750 -28.23881 -26.72209 -23.49879 -23.00441 -22.38911 -20.80551 -20.22770 -18.46708 -17.84639 -17.28778 -16.71472 -16.41110 -15.81415 -15.68464 -15.26391 -14.97109 -14.57951 -14.47322 -13.89280 -13.53414 -13.02313 -12.87135 -12.72703 -12.56604 -12.40224 -12.21546 -12.07255 -11.99218 -11.74297 -11.60612 -11.15428 -10.73164 -10.56242 -9.88222 -8.97244 -8.18252 -5.95720 0.88179 1.36605 1.43014 1.50669 2.24999 2.40204 2.97769 3.12921 3.29229 3.40719 3.51453 3.86860 4.05103 4.10366 4.28259 4.32744 4.36853 4.39401 4.49199 4.54548 4.75660 4.91642 4.94883 4.97012 5.10007 5.22051 5.32473 5.41108 5.50096 5.50946 6.20319 6.44165 7.05222 7.22361 7.73697 8.38326 8.87177 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.009308 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.623393 B = 3007.487245 C = 3637.852155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.023 3.977 3 Si 0.960 3.040 4 H -0.260 1.260 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.349 4.349 8 H 0.076 0.924 9 N -0.443 5.443 10 C 0.479 3.521 11 O -0.584 6.584 12 C -0.098 4.098 13 H 0.120 0.880 14 C -0.095 4.095 15 C -0.166 4.166 16 C 0.384 3.616 17 O -0.482 6.482 18 C -0.167 4.167 19 C 0.042 3.958 20 C -0.179 4.179 21 C -0.181 4.181 22 H 0.257 0.743 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -10.333 -2.339 10.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.183 4.183 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.477 4.477 8 H 0.093 0.907 9 N -0.162 5.162 10 C 0.268 3.732 11 O -0.465 6.465 12 C -0.119 4.119 13 H 0.138 0.862 14 C -0.133 4.133 15 C -0.203 4.203 16 C 0.262 3.738 17 O -0.358 6.358 18 C -0.205 4.205 19 C -0.062 4.062 20 C -0.217 4.217 21 C -0.220 4.220 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.110 0.890 25 H 0.148 0.852 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.097 -10.100 -2.352 10.370 hybrid contribution 0.378 1.498 0.238 1.563 sum 0.281 -8.602 -2.114 8.863 Atomic orbital electron populations 1.69965 1.07670 1.27729 1.44931 1.25885 0.95429 1.02212 0.94786 0.85406 0.79393 0.79636 0.76961 1.18408 1.22028 1.20374 1.19101 0.94883 0.86027 1.47656 0.90676 1.43029 1.42851 1.06717 1.23644 1.20442 0.82583 0.89537 0.80650 1.90476 1.65805 1.36158 1.54074 1.22113 0.96419 0.96867 0.96551 0.86234 1.22084 0.95835 0.98689 0.96677 1.22617 1.01331 1.01680 0.94698 1.25121 0.78619 0.76664 0.93396 1.90380 1.35844 1.31488 1.78086 1.22849 0.96937 1.01227 0.99439 1.22211 0.96523 0.90197 0.97317 1.23127 1.04582 1.02328 0.91672 1.23296 0.94686 1.01625 1.02362 0.93332 0.92508 0.89041 0.85240 0.86979 0.87881 0.89747 0.84745 0.90445 0.86681 0.85744 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.50 11.70 21.66 0.25 -51.25 16 2 C 0.02 1.28 4.35 84.93 0.37 1.65 16 3 Si 0.96 45.35 29.60 68.60 2.03 47.38 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.35 -18.82 7.69 84.04 0.65 -18.17 16 8 H 0.08 3.96 7.40 -2.91 -0.02 3.94 16 9 N -0.44 -21.19 2.88 -613.13 -1.77 -22.95 16 10 C 0.48 22.91 6.22 87.66 0.55 23.46 16 11 O -0.58 -33.46 13.47 -3.08 -0.04 -33.50 16 12 C -0.10 -3.31 2.31 -10.22 -0.02 -3.34 16 13 H 0.12 3.30 7.80 -2.39 -0.02 3.28 16 14 C -0.09 -2.81 5.98 31.70 0.19 -2.62 16 15 C -0.17 -3.77 6.69 30.52 0.20 -3.57 16 16 C 0.38 11.01 7.88 29.71 0.23 11.24 16 17 O -0.48 -16.19 17.99 -1.43 -0.03 -16.21 16 18 C -0.17 -5.38 5.61 30.86 0.17 -5.21 16 19 C 0.04 1.55 5.84 44.99 0.26 1.81 16 20 C -0.18 -6.02 9.83 30.59 0.30 -5.72 16 21 C -0.18 -5.56 10.10 30.59 0.31 -5.25 16 22 H 0.26 14.91 8.32 -92.71 -0.77 14.14 16 23 H 0.06 2.08 7.39 -2.38 -0.02 2.06 16 24 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.10 3.03 6.20 -2.39 -0.01 3.02 16 28 H 0.08 3.32 8.04 -2.39 -0.02 3.30 16 29 H 0.14 4.13 4.70 -2.39 -0.01 4.12 16 30 H 0.08 3.07 7.04 -2.38 -0.02 3.06 16 31 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.12 2.84 8.14 -2.38 -0.02 2.82 16 33 H 0.07 2.57 7.97 -2.39 -0.02 2.55 16 Total: -1.00 -71.34 275.03 4.78 -66.56 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.11 Total: 15.68 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 3.21 Total: -5.71 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.51 Total: -74.20 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.07 Total: -49.71 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.34 4.78 -66.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335511410.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.471 kcal (2) G-P(sol) polarization free energy of solvation -71.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds