Wall clock time and date at job start Sun Mar 29 2020 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48508 * 109.47103 * 270.00548 * 3 2 1 5 5 H 1.48497 * 109.47321 * 30.00405 * 3 2 1 6 6 H 1.48501 * 109.47333 * 150.00421 * 3 2 1 7 7 C 1.38956 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99435 * 199.10700 * 7 2 1 9 9 N 1.37096 * 120.00103 * 19.11356 * 7 2 1 10 10 C 1.34776 * 120.00298 * 42.80805 * 9 7 2 11 11 O 1.21292 * 119.99747 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99795 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.62723 * 61.38149 * 12 10 9 14 14 C 1.55047 * 110.60404 * 184.23070 * 12 10 9 15 15 C 1.54885 * 102.35746 * 155.60799 * 14 12 10 16 16 C 1.51843 * 104.43147 * 322.39552 * 15 14 12 17 17 O 1.20766 * 126.34285 * 203.76698 * 16 15 14 18 18 C 1.51446 * 107.31894 * 23.79536 * 16 15 14 19 19 C 1.46499 * 119.99257 * 222.81086 * 9 7 2 20 20 C 1.52996 * 117.50424 * 3.42327 * 19 9 7 21 21 C 1.52991 * 117.50116 * 294.79450 * 19 9 7 22 22 H 0.97002 * 119.99963 * 354.90021 * 1 2 3 23 23 H 1.09006 * 110.79999 * 37.39612 * 14 12 10 24 24 H 1.08993 * 111.01321 * 273.91519 * 14 12 10 25 25 H 1.09005 * 110.44173 * 203.66451 * 15 14 12 26 26 H 1.08992 * 110.44359 * 81.13401 * 15 14 12 27 27 H 1.08995 * 109.98846 * 118.99115 * 18 16 15 28 28 H 1.09005 * 109.98283 * 240.25491 * 18 16 15 29 29 H 1.09004 * 115.54748 * 149.13297 * 19 9 7 30 30 H 1.09001 * 117.49781 * 359.97438 * 20 19 9 31 31 H 1.08993 * 117.50172 * 145.02630 * 20 19 9 32 32 H 1.09001 * 117.50081 * 214.98257 * 21 19 9 33 33 H 1.09007 * 117.49945 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0442 -1.2293 0.3056 9 7 1.3801 -2.3578 -0.3898 10 6 0.5748 -2.3551 -1.4705 11 8 0.4067 -1.3314 -2.0990 12 6 -0.1168 -3.6239 -1.8980 13 1 -0.7841 -3.9806 -1.1134 14 6 -0.8988 -3.4010 -3.2181 15 6 -0.9745 -4.8326 -3.8044 16 6 0.3689 -5.4527 -3.4634 17 8 0.9011 -6.3700 -4.0412 18 6 0.9177 -4.7083 -2.2641 19 6 1.5835 -3.5943 0.3691 20 6 2.4444 -3.5150 1.6314 21 6 2.9900 -4.1964 0.3748 22 1 -0.4850 0.8367 0.0747 23 1 -0.3497 -2.7371 -3.8859 24 1 -1.8967 -3.0099 -3.0200 25 1 -1.1130 -4.7947 -4.8849 26 1 -1.7828 -5.3937 -3.3355 27 1 1.0496 -5.3948 -1.4279 28 1 1.8704 -4.2436 -2.5181 29 1 0.7404 -4.2851 0.3771 30 1 2.8598 -2.5429 1.8970 31 1 2.1677 -4.1536 2.4702 32 1 3.0722 -5.2832 0.3870 33 1 3.7639 -3.6727 -0.1865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335511420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:24 Heat of formation + Delta-G solvation = -38.849007 kcal Electronic energy + Delta-G solvation = -17428.659223 eV Core-core repulsion = 14648.657641 eV Total energy + Delta-G solvation = -2780.001583 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76312 -38.42289 -36.34270 -35.15579 -32.75574 -30.99290 -28.96031 -26.81314 -24.86460 -21.90081 -21.67853 -20.85819 -19.16746 -18.91291 -16.83266 -16.15459 -15.84664 -15.19803 -14.68978 -14.39044 -14.13590 -13.77351 -13.54216 -13.11505 -12.77528 -12.24887 -11.83658 -11.50155 -11.27045 -11.07463 -10.95423 -10.89744 -10.82367 -10.56495 -10.36716 -10.16973 -9.97492 -9.74770 -9.30762 -8.73036 -8.01165 -7.05600 -6.13501 -3.87717 2.10020 3.29526 3.36320 3.39722 4.05372 4.23325 4.37388 4.66667 4.76445 4.82886 5.14684 5.20987 5.39225 5.43709 5.55719 5.61567 5.73180 5.77342 5.82612 5.92928 6.07482 6.13359 6.17764 6.20475 6.45122 6.50834 6.67152 6.72880 6.90413 7.60163 7.65335 8.24460 9.03968 9.13652 9.64644 10.27101 10.95560 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027205 B = 0.009109 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.981590 B = 3073.214942 C = 3748.157106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.351 4.351 8 H 0.078 0.922 9 N -0.426 5.426 10 C 0.488 3.512 11 O -0.529 6.529 12 C -0.104 4.104 13 H 0.090 0.910 14 C -0.095 4.095 15 C -0.185 4.185 16 C 0.372 3.628 17 O -0.460 6.460 18 C -0.170 4.170 19 C 0.076 3.924 20 C -0.175 4.175 21 C -0.208 4.208 22 H 0.264 0.736 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 -8.384 -0.676 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.477 4.477 8 H 0.096 0.904 9 N -0.147 5.147 10 C 0.275 3.725 11 O -0.406 6.406 12 C -0.126 4.126 13 H 0.108 0.892 14 C -0.133 4.133 15 C -0.222 4.222 16 C 0.248 3.752 17 O -0.334 6.334 18 C -0.208 4.208 19 C -0.030 4.030 20 C -0.213 4.213 21 C -0.247 4.247 22 H 0.074 0.926 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.806 -8.179 -1.374 8.333 hybrid contribution 0.294 0.807 0.341 0.924 sum -0.512 -7.372 -1.032 7.462 Atomic orbital electron populations 1.69828 1.06543 1.27406 1.42711 1.25209 0.94811 0.99339 0.94351 0.86219 0.79293 0.82227 0.78319 1.20341 1.21320 1.19943 1.18867 0.94959 0.84047 1.49844 0.90445 1.42772 1.43727 1.06132 1.22021 1.19496 0.83153 0.88421 0.81451 1.90533 1.62382 1.33439 1.54250 1.22013 0.96827 0.95315 0.98444 0.89225 1.22258 1.01310 0.93866 0.95874 1.22972 0.97601 0.98703 1.02968 1.25139 0.87418 0.79693 0.82907 1.90377 1.64448 1.25422 1.53155 1.22682 1.01251 0.98559 0.98292 1.21697 0.92373 0.91329 0.97602 1.23085 1.04543 1.02594 0.91066 1.23344 0.99750 0.98692 1.02938 0.92603 0.89739 0.90345 0.89325 0.88103 0.88220 0.87902 0.88034 0.87507 0.89825 0.89785 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.07 11.67 55.50 0.65 -23.42 16 2 C 0.07 2.03 4.35 -17.46 -0.08 1.95 16 3 Si 0.91 21.65 29.60 -169.99 -5.03 16.62 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.35 -9.30 7.98 -14.93 -0.12 -9.42 16 8 H 0.08 2.00 7.20 -52.49 -0.38 1.63 16 9 N -0.43 -10.15 2.85 -107.74 -0.31 -10.46 16 10 C 0.49 11.65 6.23 -10.99 -0.07 11.58 16 11 O -0.53 -14.90 13.42 5.55 0.07 -14.82 16 12 C -0.10 -1.83 2.39 -90.02 -0.22 -2.05 16 13 H 0.09 1.45 7.67 -51.93 -0.40 1.05 16 14 C -0.10 -1.51 5.97 -24.66 -0.15 -1.66 16 15 C -0.18 -2.36 6.72 -26.32 -0.18 -2.53 16 16 C 0.37 5.57 7.88 -28.10 -0.22 5.35 16 17 O -0.46 -8.05 17.99 5.99 0.11 -7.95 16 18 C -0.17 -2.61 5.01 -26.85 -0.13 -2.75 16 19 C 0.08 1.44 4.48 -67.94 -0.30 1.13 16 20 C -0.18 -3.04 9.79 -26.73 -0.26 -3.30 16 21 C -0.21 -3.39 10.35 -26.73 -0.28 -3.67 16 22 H 0.26 7.35 8.32 -40.82 -0.34 7.01 16 23 H 0.08 1.50 7.51 -51.93 -0.39 1.11 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.10 1.35 7.10 -51.93 -0.37 0.98 16 28 H 0.10 1.75 7.82 -51.93 -0.41 1.34 16 29 H 0.10 1.69 6.43 -51.93 -0.33 1.36 16 30 H 0.11 2.08 6.69 -51.93 -0.35 1.73 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 275.61 15.07 4.15 4.15 Total: -1.00 -32.13 275.61 -6.65 -38.79 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.29 Total: 2.45 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.00 Total: -5.35 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.34 Total: -33.88 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.18 Total: -22.77 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.13 -6.65 -38.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335511420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.063 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds