Wall clock time and date at job start Sun Mar 29 2020 21:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48508 * 109.47103 * 270.00548 * 3 2 1 5 5 H 1.48497 * 109.47321 * 30.00405 * 3 2 1 6 6 H 1.48501 * 109.47333 * 150.00421 * 3 2 1 7 7 C 1.38956 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99435 * 199.10700 * 7 2 1 9 9 N 1.37096 * 120.00103 * 19.11356 * 7 2 1 10 10 C 1.34776 * 120.00298 * 42.80805 * 9 7 2 11 11 O 1.21292 * 119.99747 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99795 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.62723 * 61.38149 * 12 10 9 14 14 C 1.55047 * 110.60404 * 184.23070 * 12 10 9 15 15 C 1.54885 * 102.35746 * 155.60799 * 14 12 10 16 16 C 1.51843 * 104.43147 * 322.39552 * 15 14 12 17 17 O 1.20766 * 126.34285 * 203.76698 * 16 15 14 18 18 C 1.51446 * 107.31894 * 23.79536 * 16 15 14 19 19 C 1.46499 * 119.99257 * 222.81086 * 9 7 2 20 20 C 1.52996 * 117.50424 * 3.42327 * 19 9 7 21 21 C 1.52991 * 117.50116 * 294.79450 * 19 9 7 22 22 H 0.97002 * 119.99963 * 354.90021 * 1 2 3 23 23 H 1.09006 * 110.79999 * 37.39612 * 14 12 10 24 24 H 1.08993 * 111.01321 * 273.91519 * 14 12 10 25 25 H 1.09005 * 110.44173 * 203.66451 * 15 14 12 26 26 H 1.08992 * 110.44359 * 81.13401 * 15 14 12 27 27 H 1.08995 * 109.98846 * 118.99115 * 18 16 15 28 28 H 1.09005 * 109.98283 * 240.25491 * 18 16 15 29 29 H 1.09004 * 115.54748 * 149.13297 * 19 9 7 30 30 H 1.09001 * 117.49781 * 359.97438 * 20 19 9 31 31 H 1.08993 * 117.50172 * 145.02630 * 20 19 9 32 32 H 1.09001 * 117.50081 * 214.98257 * 21 19 9 33 33 H 1.09007 * 117.49945 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0442 -1.2293 0.3056 9 7 1.3801 -2.3578 -0.3898 10 6 0.5748 -2.3551 -1.4705 11 8 0.4067 -1.3314 -2.0990 12 6 -0.1168 -3.6239 -1.8980 13 1 -0.7841 -3.9806 -1.1134 14 6 -0.8988 -3.4010 -3.2181 15 6 -0.9745 -4.8326 -3.8044 16 6 0.3689 -5.4527 -3.4634 17 8 0.9011 -6.3700 -4.0412 18 6 0.9177 -4.7083 -2.2641 19 6 1.5835 -3.5943 0.3691 20 6 2.4444 -3.5150 1.6314 21 6 2.9900 -4.1964 0.3748 22 1 -0.4850 0.8367 0.0747 23 1 -0.3497 -2.7371 -3.8859 24 1 -1.8967 -3.0099 -3.0200 25 1 -1.1130 -4.7947 -4.8849 26 1 -1.7828 -5.3937 -3.3355 27 1 1.0496 -5.3948 -1.4279 28 1 1.8704 -4.2436 -2.5181 29 1 0.7404 -4.2851 0.3771 30 1 2.8598 -2.5429 1.8970 31 1 2.1677 -4.1536 2.4702 32 1 3.0722 -5.2832 0.3870 33 1 3.7639 -3.6727 -0.1865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335511420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:23 Heat of formation + Delta-G solvation = -59.286093 kcal Electronic energy + Delta-G solvation = -17429.545442 eV Core-core repulsion = 14648.657641 eV Total energy + Delta-G solvation = -2780.887801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17928 -39.95070 -37.87697 -36.64110 -34.66208 -32.82495 -30.27992 -28.21247 -26.69095 -23.42965 -23.03346 -22.39018 -20.60249 -20.36343 -18.44669 -17.88891 -17.13685 -16.63124 -16.56170 -15.78475 -15.62512 -15.45804 -15.01620 -14.47530 -14.24138 -13.82535 -13.57754 -13.05116 -12.81868 -12.75488 -12.59603 -12.29646 -12.22175 -12.15091 -12.03137 -11.67912 -11.57728 -11.16280 -10.71015 -10.53902 -9.85303 -8.94169 -8.18734 -5.94438 0.92170 1.35902 1.44162 1.48239 2.26913 2.42718 3.03823 3.13664 3.26995 3.36272 3.55334 3.87599 4.00814 4.14605 4.31606 4.35102 4.37644 4.47351 4.51617 4.56773 4.83088 4.92934 4.94089 4.98189 5.10588 5.23802 5.34300 5.36221 5.48806 5.52960 6.22404 6.47499 7.06545 7.24096 7.75410 8.41266 8.89757 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027205 B = 0.009109 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.981590 B = 3073.214942 C = 3748.157106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.023 3.977 3 Si 0.965 3.035 4 H -0.293 1.293 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.357 4.357 8 H 0.075 0.925 9 N -0.443 5.443 10 C 0.472 3.528 11 O -0.586 6.586 12 C -0.096 4.096 13 H 0.112 0.888 14 C -0.095 4.095 15 C -0.166 4.166 16 C 0.380 3.620 17 O -0.484 6.484 18 C -0.161 4.161 19 C 0.051 3.949 20 C -0.175 4.175 21 C -0.182 4.182 22 H 0.259 0.741 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.136 0.864 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 -10.700 -0.178 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.183 4.183 3 Si 0.790 3.210 4 H -0.220 1.220 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.485 4.485 8 H 0.093 0.907 9 N -0.163 5.163 10 C 0.261 3.739 11 O -0.467 6.467 12 C -0.117 4.117 13 H 0.130 0.870 14 C -0.133 4.133 15 C -0.203 4.203 16 C 0.258 3.742 17 O -0.361 6.361 18 C -0.199 4.199 19 C -0.054 4.054 20 C -0.213 4.213 21 C -0.221 4.221 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.122 0.878 26 H 0.153 0.847 27 H 0.143 0.857 28 H 0.101 0.899 29 H 0.148 0.852 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.892 -10.523 -0.838 10.594 hybrid contribution 0.400 1.487 0.198 1.553 sum -0.491 -9.036 -0.640 9.072 Atomic orbital electron populations 1.69921 1.07782 1.27485 1.45055 1.25955 0.95506 1.02306 0.94560 0.85393 0.79086 0.79067 0.77409 1.21978 1.20648 1.18064 1.19076 0.95104 0.85567 1.48709 0.90705 1.43012 1.43434 1.07077 1.22729 1.20569 0.82680 0.89859 0.80753 1.90490 1.64239 1.36059 1.55897 1.21924 0.97302 0.92790 0.99724 0.87030 1.22201 1.00768 0.95591 0.94716 1.22899 0.97222 0.96167 1.04058 1.25189 0.87946 0.78919 0.82101 1.90387 1.65211 1.26692 1.53760 1.22590 0.99510 0.98106 0.99699 1.22017 0.94744 0.90110 0.98516 1.23137 1.03889 1.02166 0.92102 1.23338 0.97017 1.00591 1.01154 0.93210 0.92574 0.89937 0.87769 0.84670 0.85655 0.89883 0.85209 0.90345 0.86481 0.85791 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.73 11.67 21.67 0.25 -51.48 16 2 C 0.02 1.31 4.35 84.93 0.37 1.68 16 3 Si 0.96 45.56 29.60 68.60 2.03 47.59 16 4 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.36 -19.30 7.98 84.04 0.67 -18.62 16 8 H 0.08 3.96 7.20 -2.91 -0.02 3.94 16 9 N -0.44 -21.13 2.85 -613.15 -1.74 -22.87 16 10 C 0.47 22.78 6.23 87.66 0.55 23.32 16 11 O -0.59 -34.20 13.42 -3.07 -0.04 -34.24 16 12 C -0.10 -3.22 2.39 -10.41 -0.02 -3.25 16 13 H 0.11 3.28 7.67 -2.39 -0.02 3.26 16 14 C -0.09 -2.88 5.97 31.94 0.19 -2.69 16 15 C -0.17 -3.68 6.72 30.86 0.21 -3.48 16 16 C 0.38 10.31 7.88 29.70 0.23 10.54 16 17 O -0.48 -15.73 17.99 -1.47 -0.03 -15.76 16 18 C -0.16 -4.57 5.01 30.52 0.15 -4.41 16 19 C 0.05 1.82 4.48 44.99 0.20 2.02 16 20 C -0.18 -5.70 9.79 30.59 0.30 -5.40 16 21 C -0.18 -5.42 10.35 30.59 0.32 -5.11 16 22 H 0.26 14.93 8.32 -92.71 -0.77 14.16 16 23 H 0.06 2.03 7.51 -2.38 -0.02 2.01 16 24 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.10 2.08 8.14 -2.38 -0.02 2.07 16 26 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.13 2.88 7.10 -2.39 -0.02 2.87 16 28 H 0.08 2.74 7.82 -2.38 -0.02 2.72 16 29 H 0.13 3.84 6.43 -2.38 -0.02 3.83 16 30 H 0.08 3.01 6.69 -2.39 -0.02 3.00 16 31 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -72.71 275.61 4.75 -67.97 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.11 Total: 14.19 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 3.17 Total: -5.40 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -1.49 Total: -74.35 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.07 Total: -50.00 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.71 4.75 -67.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335511420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.679 kcal (2) G-P(sol) polarization free energy of solvation -72.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds