Wall clock time and date at job start Sun Mar 29 2020 21:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99581 * 2 1 4 4 H 1.48501 * 109.46973 * 269.99458 * 3 2 1 5 5 H 1.48494 * 109.47222 * 29.99594 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99732 * 3 2 1 7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00121 * 197.37018 * 7 2 1 9 9 N 1.36939 * 119.99994 * 17.37225 * 7 2 1 10 10 C 1.46922 * 120.63063 * 27.65770 * 9 7 2 11 11 C 1.53197 * 108.76267 * 126.40661 * 10 9 7 12 12 C 1.53043 * 109.31157 * 54.65623 * 11 10 9 13 13 C 1.53042 * 109.52588 * 298.61669 * 12 11 10 14 14 H 1.09002 * 109.49801 * 301.41533 * 13 12 11 15 15 C 1.53004 * 109.49235 * 181.35461 * 13 12 11 16 16 C 1.53007 * 109.46688 * 174.99833 * 15 13 12 17 17 F 1.39893 * 109.46966 * 60.00075 * 16 15 13 18 18 F 1.39898 * 109.47113 * 180.02562 * 16 15 13 19 19 F 1.39904 * 109.46822 * 299.99754 * 16 15 13 20 20 C 1.46932 * 120.62713 * 207.68551 * 9 7 2 21 21 H 0.96998 * 120.00359 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.58914 * 246.20469 * 10 9 7 23 23 H 1.09001 * 109.58707 * 6.62901 * 10 9 7 24 24 H 1.08997 * 109.51086 * 294.69902 * 11 10 9 25 25 H 1.08997 * 109.48385 * 174.60202 * 11 10 9 26 26 H 1.08999 * 109.45792 * 178.59710 * 12 11 10 27 27 H 1.09005 * 109.45653 * 58.62660 * 12 11 10 28 28 H 1.09000 * 109.47223 * 294.99682 * 15 13 12 29 29 H 1.08998 * 109.47374 * 55.00078 * 15 13 12 30 30 H 1.09000 * 109.58551 * 113.79883 * 20 9 7 31 31 H 1.08996 * 109.70732 * 353.44089 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2798 9 7 1.3725 -2.3612 -0.3530 10 6 0.2279 -2.3349 -1.2738 11 6 0.5012 -3.3052 -2.4274 12 6 0.8188 -4.6903 -1.8593 13 6 2.0745 -4.6101 -0.9881 14 1 2.9084 -4.2403 -1.5848 15 6 2.4107 -6.0016 -0.4479 16 6 3.7334 -5.9448 0.3193 17 9 3.6159 -5.0465 1.3853 18 9 4.0412 -7.2172 0.8128 19 9 4.7526 -5.5191 -0.5393 20 6 1.8195 -3.6546 0.1818 21 1 -0.4850 0.8400 -0.0004 22 1 -0.6742 -2.6412 -0.7443 23 1 0.0986 -1.3266 -1.6673 24 1 1.3499 -2.9477 -3.0105 25 1 -0.3795 -3.3673 -3.0666 26 1 0.9892 -5.3885 -2.6788 27 1 -0.0204 -5.0364 -1.2558 28 1 1.6166 -6.3333 0.2211 29 1 2.5022 -6.7015 -1.2784 30 1 1.0471 -4.0686 0.8300 31 1 2.7396 -3.5192 0.7502 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335554512.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:14 Heat of formation + Delta-G solvation = -148.678079 kcal Electronic energy + Delta-G solvation = -17921.628712 eV Core-core repulsion = 14595.007844 eV Total energy + Delta-G solvation = -3326.620869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.90166 -47.42020 -47.33528 -37.86009 -33.95459 -31.79531 -30.41597 -27.82713 -25.27160 -23.38697 -22.08667 -21.03546 -19.23852 -18.29224 -18.06969 -16.99899 -16.62837 -14.91951 -14.53601 -14.31048 -14.25054 -13.84028 -13.66837 -13.57216 -13.50159 -13.41882 -12.78401 -12.56275 -12.26283 -12.19540 -11.58459 -11.26175 -10.98000 -10.72635 -10.45653 -10.18862 -10.17885 -9.87811 -9.53977 -9.38184 -8.44462 -6.65966 -5.76621 -3.18667 3.01908 3.40088 3.46816 3.48439 4.05711 4.24696 4.28868 4.52345 5.11340 5.18867 5.38678 5.43237 5.57140 5.67005 5.76231 5.95058 6.14496 6.29691 6.33716 6.62530 6.67005 6.78371 6.85460 6.95591 7.40077 7.67968 7.82909 8.47297 9.23911 9.87129 10.43447 11.31945 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.030785 B = 0.008006 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.323277 B = 3496.424622 C = 4053.734169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.167 3.833 11 C -0.143 4.143 12 C -0.098 4.098 13 C -0.111 4.111 14 H 0.079 0.921 15 C -0.158 4.158 16 C 0.450 3.550 17 F -0.173 7.173 18 F -0.194 7.194 19 F -0.185 7.185 20 C 0.135 3.865 21 H 0.253 0.747 22 H 0.017 0.983 23 H 0.087 0.913 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.019 0.981 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 -12.161 -2.452 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.042 3.958 11 C -0.182 4.182 12 C -0.136 4.136 13 C -0.132 4.132 14 H 0.098 0.902 15 C -0.197 4.197 16 C 0.396 3.604 17 F -0.155 7.155 18 F -0.176 7.176 19 F -0.167 7.167 20 C 0.009 3.991 21 H 0.063 0.937 22 H 0.035 0.965 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.036 0.964 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.454 -11.988 -2.402 12.705 hybrid contribution 0.600 0.794 0.116 1.002 sum 4.054 -11.194 -2.286 12.123 Atomic orbital electron populations 1.70040 1.05241 1.25448 1.54059 1.25026 0.95291 0.98390 1.00993 0.86285 0.79169 0.83648 0.77680 1.21470 1.21779 1.20390 1.19215 0.92771 0.84810 1.41236 0.91617 1.44049 1.35699 1.01239 1.50214 1.20817 0.88591 0.98450 0.87967 1.22187 1.00157 0.95879 0.99980 1.21374 0.96484 0.97943 0.97807 1.21795 0.99499 0.91776 1.00089 0.90223 1.22958 0.92544 1.02704 1.01470 1.20759 0.88095 0.72968 0.78545 1.93158 1.96054 1.67645 1.58616 1.93150 1.94477 1.41073 1.88895 1.93167 1.63368 1.90027 1.70119 1.21383 0.98916 0.86846 0.91995 0.93678 0.96453 0.89459 0.92656 0.93117 0.93456 0.92464 0.87638 0.88047 0.96359 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 11.19 55.49 0.62 -25.77 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -14.92 2.99 -172.32 -0.52 -15.43 16 10 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 12 C -0.10 -1.56 5.17 -26.69 -0.14 -1.70 16 13 C -0.11 -1.85 2.27 -90.50 -0.21 -2.05 16 14 H 0.08 1.42 7.66 -51.93 -0.40 1.02 16 15 C -0.16 -2.02 4.84 -26.73 -0.13 -2.15 16 16 C 0.45 6.41 3.15 37.16 0.12 6.53 16 17 F -0.17 -2.85 13.92 2.25 0.03 -2.82 16 18 F -0.19 -2.62 17.32 2.25 0.04 -2.58 16 19 F -0.19 -2.83 16.71 2.25 0.04 -2.79 16 20 C 0.14 2.83 5.04 -3.71 -0.02 2.81 16 21 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.55 5.38 -51.93 -0.28 1.27 16 LS Contribution 259.81 15.07 3.92 3.92 Total: -1.00 -29.45 259.81 -5.61 -35.06 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -3.92 Total: -3.92 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.79 Total: -2.61 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.10 Total: -41.20 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.11 Total: -8.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.45 -5.61 -35.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335554512.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.620 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds