Wall clock time and date at job start Sun Mar 29 2020 21:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99581 * 2 1 4 4 H 1.48501 * 109.46973 * 269.99458 * 3 2 1 5 5 H 1.48494 * 109.47222 * 29.99594 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99732 * 3 2 1 7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00121 * 197.37018 * 7 2 1 9 9 N 1.36939 * 119.99994 * 17.37225 * 7 2 1 10 10 C 1.46922 * 120.63063 * 27.65770 * 9 7 2 11 11 C 1.53197 * 108.76267 * 126.40661 * 10 9 7 12 12 C 1.53043 * 109.31157 * 54.65623 * 11 10 9 13 13 C 1.53042 * 109.52588 * 298.61669 * 12 11 10 14 14 H 1.09002 * 109.49801 * 301.41533 * 13 12 11 15 15 C 1.53004 * 109.49235 * 181.35461 * 13 12 11 16 16 C 1.53007 * 109.46688 * 174.99833 * 15 13 12 17 17 F 1.39893 * 109.46966 * 60.00075 * 16 15 13 18 18 F 1.39898 * 109.47113 * 180.02562 * 16 15 13 19 19 F 1.39904 * 109.46822 * 299.99754 * 16 15 13 20 20 C 1.46932 * 120.62713 * 207.68551 * 9 7 2 21 21 H 0.96998 * 120.00359 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.58914 * 246.20469 * 10 9 7 23 23 H 1.09001 * 109.58707 * 6.62901 * 10 9 7 24 24 H 1.08997 * 109.51086 * 294.69902 * 11 10 9 25 25 H 1.08997 * 109.48385 * 174.60202 * 11 10 9 26 26 H 1.08999 * 109.45792 * 178.59710 * 12 11 10 27 27 H 1.09005 * 109.45653 * 58.62660 * 12 11 10 28 28 H 1.09000 * 109.47223 * 294.99682 * 15 13 12 29 29 H 1.08998 * 109.47374 * 55.00078 * 15 13 12 30 30 H 1.09000 * 109.58551 * 113.79883 * 20 9 7 31 31 H 1.08996 * 109.70732 * 353.44089 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2798 9 7 1.3725 -2.3612 -0.3530 10 6 0.2279 -2.3349 -1.2738 11 6 0.5012 -3.3052 -2.4274 12 6 0.8188 -4.6903 -1.8593 13 6 2.0745 -4.6101 -0.9881 14 1 2.9084 -4.2403 -1.5848 15 6 2.4107 -6.0016 -0.4479 16 6 3.7334 -5.9448 0.3193 17 9 3.6159 -5.0465 1.3853 18 9 4.0412 -7.2172 0.8128 19 9 4.7526 -5.5191 -0.5393 20 6 1.8195 -3.6546 0.1818 21 1 -0.4850 0.8400 -0.0004 22 1 -0.6742 -2.6412 -0.7443 23 1 0.0986 -1.3266 -1.6673 24 1 1.3499 -2.9477 -3.0105 25 1 -0.3795 -3.3673 -3.0666 26 1 0.9892 -5.3885 -2.6788 27 1 -0.0204 -5.0364 -1.2558 28 1 1.6166 -6.3333 0.2211 29 1 2.5022 -6.7015 -1.2784 30 1 1.0471 -4.0686 0.8300 31 1 2.7396 -3.5192 0.7502 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335554512.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:13 Heat of formation + Delta-G solvation = -165.668000 kcal Electronic energy + Delta-G solvation = -17922.365451 eV Core-core repulsion = 14595.007844 eV Total energy + Delta-G solvation = -3327.357607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.04799 -48.56671 -48.49762 -39.42979 -35.67696 -33.39565 -32.27449 -29.23943 -27.22122 -24.68819 -23.81245 -22.49176 -20.77538 -19.45705 -19.24471 -18.63171 -18.11585 -16.88476 -15.95127 -15.81476 -15.48178 -15.19241 -15.09243 -14.95322 -14.74554 -14.65408 -14.49435 -14.00565 -13.91042 -13.39170 -12.97801 -12.95162 -12.75460 -12.51827 -12.21370 -11.94579 -11.78931 -11.56289 -11.22628 -10.97909 -10.53674 -8.68024 -7.88074 -5.32988 1.45120 1.46136 1.55337 1.92042 2.49955 2.96528 3.11814 3.19417 3.25980 3.70574 4.00164 4.06787 4.10945 4.41655 4.56251 4.57953 4.72012 4.82706 4.95561 5.03121 5.14672 5.27280 5.36130 5.41273 5.56339 5.66541 5.79777 6.38896 7.15166 7.87471 8.37471 9.17724 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.030785 B = 0.008006 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.323277 B = 3496.424622 C = 4053.734169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.061 0.939 9 N -0.611 5.611 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.093 4.093 13 C -0.102 4.102 14 H 0.068 0.932 15 C -0.146 4.146 16 C 0.448 3.552 17 F -0.191 7.191 18 F -0.188 7.188 19 F -0.193 7.193 20 C 0.130 3.870 21 H 0.250 0.750 22 H -0.003 1.003 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.123 0.877 29 H 0.140 0.860 30 H 0.015 0.985 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 -13.917 -3.393 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.078 0.922 9 N -0.334 5.334 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.130 4.130 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.184 4.184 16 C 0.394 3.606 17 F -0.173 7.173 18 F -0.169 7.169 19 F -0.174 7.174 20 C 0.005 3.995 21 H 0.059 0.941 22 H 0.015 0.985 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.158 0.842 30 H 0.033 0.967 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.935 -13.779 -3.346 14.715 hybrid contribution 0.468 1.306 0.456 1.460 sum 4.403 -12.473 -2.890 13.539 Atomic orbital electron populations 1.70185 1.06544 1.25812 1.55409 1.25759 0.96081 1.01388 1.01356 0.85300 0.78091 0.79659 0.77637 1.21058 1.21932 1.19593 1.19479 0.92816 0.86326 1.40705 0.92174 1.44332 1.35903 1.02098 1.51078 1.20672 0.87630 0.97935 0.89238 1.22032 1.00923 0.96352 0.97985 1.21366 0.96078 0.96653 0.98950 1.21566 0.99714 0.92815 0.98108 0.91332 1.22944 0.91893 1.00764 1.02847 1.21039 0.88656 0.72759 0.78167 1.93126 1.96138 1.68434 1.59583 1.93162 1.94489 1.40440 1.88835 1.93155 1.63898 1.90166 1.70231 1.21541 0.98006 0.86093 0.93845 0.94086 0.98513 0.93192 0.93323 0.90841 0.89251 0.91719 0.85834 0.84209 0.96695 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 11.19 21.65 0.24 -55.89 16 2 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 3 Si 0.96 45.98 29.59 68.60 2.03 48.01 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.26 -14.97 9.59 84.03 0.81 -14.17 16 8 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 9 N -0.61 -31.34 2.99 -699.10 -2.09 -33.44 16 10 C 0.17 8.26 5.31 86.36 0.46 8.72 16 11 C -0.13 -4.79 6.08 30.67 0.19 -4.60 16 12 C -0.09 -2.61 5.17 30.62 0.16 -2.46 16 13 C -0.10 -3.12 2.27 -10.72 -0.02 -3.15 16 14 H 0.07 2.29 7.66 -2.39 -0.02 2.27 16 15 C -0.15 -3.18 4.84 30.60 0.15 -3.03 16 16 C 0.45 11.71 3.15 71.98 0.23 11.94 16 17 F -0.19 -6.12 13.92 44.97 0.63 -5.50 16 18 F -0.19 -4.56 17.32 44.97 0.78 -3.78 16 19 F -0.19 -5.52 16.71 44.97 0.75 -4.77 16 20 C 0.13 5.42 5.04 86.36 0.44 5.85 16 21 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 22 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.05 2.76 6.04 -2.39 -0.01 2.75 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 2.65 5.38 -2.39 -0.01 2.64 16 Total: -1.00 -65.30 259.81 6.27 -59.03 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: 1.13 Total: -0.29 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 2.81 Total: -3.37 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -1.85 Total: -89.33 kcal Atomic # 9 Polarization: -16.20 SS G_CDS: 2.16 Total: -14.05 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -65.30 6.27 -59.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335554512.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.638 kcal (2) G-P(sol) polarization free energy of solvation -65.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds