Wall clock time and date at job start Sun Mar 29 2020 21:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47510 * 270.00436 * 3 2 1 5 5 H 1.48508 * 109.47053 * 30.00546 * 3 2 1 6 6 H 1.48505 * 109.46954 * 149.99948 * 3 2 1 7 7 C 1.38810 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99663 * 163.07235 * 7 2 1 9 9 N 1.36929 * 120.00065 * 343.06925 * 7 2 1 10 10 C 1.46929 * 120.63312 * 331.85266 * 9 7 2 11 11 C 1.53198 * 108.77526 * 233.58842 * 10 9 7 12 12 C 1.53046 * 109.33268 * 305.34500 * 11 10 9 13 13 C 1.53101 * 109.50673 * 61.35200 * 12 11 10 14 14 H 1.09003 * 109.51563 * 58.62150 * 13 12 11 15 15 C 1.52993 * 109.48916 * 178.69753 * 13 12 11 16 16 C 1.53002 * 109.47023 * 184.85364 * 15 13 12 17 17 F 1.39898 * 109.47294 * 59.99971 * 16 15 13 18 18 F 1.39907 * 109.47263 * 179.97438 * 16 15 13 19 19 F 1.39902 * 109.47241 * 299.99667 * 16 15 13 20 20 C 1.46925 * 120.63093 * 151.82725 * 9 7 2 21 21 H 0.96997 * 119.99978 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.59258 * 113.79868 * 10 9 7 23 23 H 1.08997 * 109.70361 * 353.43929 * 10 9 7 24 24 H 1.09000 * 109.49707 * 65.30971 * 11 10 9 25 25 H 1.09000 * 109.49875 * 185.38028 * 11 10 9 26 26 H 1.09007 * 109.45351 * 181.40243 * 12 11 10 27 27 H 1.08999 * 109.46039 * 301.35928 * 12 11 10 28 28 H 1.09001 * 109.47294 * 304.84654 * 15 13 12 29 29 H 1.08995 * 109.47357 * 64.85670 * 15 13 12 30 30 H 1.09002 * 109.59018 * 246.19826 * 20 9 7 31 31 H 1.09000 * 109.58797 * 6.48171 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2729 9 7 1.3702 -2.3624 0.3443 10 6 0.2261 -2.3409 1.2660 11 6 0.4976 -3.3208 2.4118 12 6 0.8118 -4.7024 1.8332 13 6 2.0675 -4.6180 0.9614 14 1 2.9028 -4.2549 1.5602 15 6 2.3999 -6.0056 0.4094 16 6 3.7202 -5.9450 -0.3614 17 9 4.7428 -5.5274 0.4971 18 9 4.0245 -7.2141 -0.8657 19 9 3.6009 -5.0384 -1.4202 20 6 1.8139 -3.6527 -0.2008 21 1 -0.4850 0.8400 0.0004 22 1 -0.6770 -2.6411 0.7346 23 1 0.0967 -1.3359 1.6677 24 1 1.3473 -2.9697 2.9972 25 1 -0.3828 -3.3859 3.0512 26 1 0.9808 -5.4072 2.6475 27 1 -0.0284 -5.0422 1.2276 28 1 2.4930 -6.7121 1.2343 29 1 1.6033 -6.3310 -0.2596 30 1 1.0403 -4.0599 -0.8518 31 1 2.7333 -3.5124 -0.7693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335554514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:16 Heat of formation + Delta-G solvation = -148.658442 kcal Electronic energy + Delta-G solvation = -17921.593886 eV Core-core repulsion = 14594.973869 eV Total energy + Delta-G solvation = -3326.620017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.89907 -47.41713 -47.33320 -37.85325 -33.94933 -31.79561 -30.41312 -27.82405 -25.26854 -23.38583 -22.08370 -21.03365 -19.23684 -18.29019 -18.06850 -16.99568 -16.62819 -14.91150 -14.53591 -14.30914 -14.24888 -13.83865 -13.66927 -13.57069 -13.49934 -13.41606 -12.78056 -12.55982 -12.26348 -12.19313 -11.58205 -11.25633 -10.98605 -10.69634 -10.46058 -10.21966 -10.17657 -9.87564 -9.53679 -9.38146 -8.44387 -6.64632 -5.76659 -3.18880 3.02072 3.39478 3.46189 3.49302 4.05902 4.24891 4.29006 4.52431 5.11605 5.19048 5.38851 5.43611 5.57305 5.67156 5.76351 5.95053 6.14623 6.29949 6.33791 6.62646 6.67164 6.78601 6.85550 6.95902 7.39956 7.68178 7.82840 8.47679 9.24105 9.87293 10.43930 11.32016 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.030746 B = 0.008011 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.479764 B = 3494.357754 C = 4053.754599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.168 3.832 11 C -0.143 4.143 12 C -0.098 4.098 13 C -0.111 4.111 14 H 0.079 0.921 15 C -0.158 4.158 16 C 0.450 3.550 17 F -0.185 7.185 18 F -0.194 7.194 19 F -0.173 7.173 20 C 0.135 3.865 21 H 0.253 0.747 22 H 0.017 0.983 23 H 0.087 0.913 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.018 0.982 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 -12.150 2.405 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.042 3.958 11 C -0.182 4.182 12 C -0.136 4.136 13 C -0.131 4.131 14 H 0.098 0.902 15 C -0.197 4.197 16 C 0.396 3.604 17 F -0.167 7.167 18 F -0.176 7.176 19 F -0.155 7.155 20 C 0.009 3.991 21 H 0.063 0.937 22 H 0.035 0.965 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.036 0.964 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.420 -11.975 2.371 12.677 hybrid contribution 0.594 0.798 -0.144 1.005 sum 4.014 -11.177 2.227 12.083 Atomic orbital electron populations 1.70039 1.05253 1.25445 1.54056 1.25037 0.95289 0.98393 1.00957 0.86311 0.79192 0.83641 0.77735 1.21387 1.21568 1.20463 1.19180 0.92578 0.84747 1.41550 0.91706 1.44034 1.35743 1.01383 1.50021 1.20800 0.88619 0.98298 0.88060 1.22188 1.00163 0.95917 0.99938 1.21383 0.96483 0.97933 0.97800 1.21802 0.99509 0.91815 1.00019 0.90223 1.22955 0.92598 1.02716 1.01406 1.20761 0.88043 0.72978 0.78585 1.93166 1.63129 1.90262 1.70122 1.93152 1.94539 1.41360 1.88550 1.93161 1.96036 1.67132 1.59147 1.21389 0.98933 0.86844 0.91981 0.93685 0.96470 0.89523 0.92656 0.93122 0.93450 0.92465 0.88050 0.87640 0.96372 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 11.19 55.49 0.62 -25.77 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.92 2.99 -172.32 -0.52 -15.44 16 10 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 12 C -0.10 -1.56 5.17 -26.66 -0.14 -1.70 16 13 C -0.11 -1.85 2.28 -90.47 -0.21 -2.05 16 14 H 0.08 1.42 7.67 -51.93 -0.40 1.02 16 15 C -0.16 -2.02 4.85 -26.73 -0.13 -2.15 16 16 C 0.45 6.42 3.15 37.16 0.12 6.53 16 17 F -0.19 -2.83 16.71 2.25 0.04 -2.79 16 18 F -0.19 -2.62 17.32 2.25 0.04 -2.58 16 19 F -0.17 -2.85 13.91 2.25 0.03 -2.82 16 20 C 0.14 2.83 5.03 -3.71 -0.02 2.82 16 21 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.09 2.31 6.07 -51.93 -0.31 2.00 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.55 5.38 -51.93 -0.28 1.27 16 LS Contribution 259.84 15.07 3.92 3.92 Total: -1.00 -29.48 259.84 -5.61 -35.09 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -3.92 Total: -3.91 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.79 Total: -2.60 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.11 Total: -41.21 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.11 Total: -8.20 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.48 -5.61 -35.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335554514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.571 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds