Wall clock time and date at job start Sun Mar 29 2020 21:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47510 * 270.00436 * 3 2 1 5 5 H 1.48508 * 109.47053 * 30.00546 * 3 2 1 6 6 H 1.48505 * 109.46954 * 149.99948 * 3 2 1 7 7 C 1.38810 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99663 * 163.07235 * 7 2 1 9 9 N 1.36929 * 120.00065 * 343.06925 * 7 2 1 10 10 C 1.46929 * 120.63312 * 331.85266 * 9 7 2 11 11 C 1.53198 * 108.77526 * 233.58842 * 10 9 7 12 12 C 1.53046 * 109.33268 * 305.34500 * 11 10 9 13 13 C 1.53101 * 109.50673 * 61.35200 * 12 11 10 14 14 H 1.09003 * 109.51563 * 58.62150 * 13 12 11 15 15 C 1.52993 * 109.48916 * 178.69753 * 13 12 11 16 16 C 1.53002 * 109.47023 * 184.85364 * 15 13 12 17 17 F 1.39898 * 109.47294 * 59.99971 * 16 15 13 18 18 F 1.39907 * 109.47263 * 179.97438 * 16 15 13 19 19 F 1.39902 * 109.47241 * 299.99667 * 16 15 13 20 20 C 1.46925 * 120.63093 * 151.82725 * 9 7 2 21 21 H 0.96997 * 119.99978 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.59258 * 113.79868 * 10 9 7 23 23 H 1.08997 * 109.70361 * 353.43929 * 10 9 7 24 24 H 1.09000 * 109.49707 * 65.30971 * 11 10 9 25 25 H 1.09000 * 109.49875 * 185.38028 * 11 10 9 26 26 H 1.09007 * 109.45351 * 181.40243 * 12 11 10 27 27 H 1.08999 * 109.46039 * 301.35928 * 12 11 10 28 28 H 1.09001 * 109.47294 * 304.84654 * 15 13 12 29 29 H 1.08995 * 109.47357 * 64.85670 * 15 13 12 30 30 H 1.09002 * 109.59018 * 246.19826 * 20 9 7 31 31 H 1.09000 * 109.58797 * 6.48171 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2729 9 7 1.3702 -2.3624 0.3443 10 6 0.2261 -2.3409 1.2660 11 6 0.4976 -3.3208 2.4118 12 6 0.8118 -4.7024 1.8332 13 6 2.0675 -4.6180 0.9614 14 1 2.9028 -4.2549 1.5602 15 6 2.3999 -6.0056 0.4094 16 6 3.7202 -5.9450 -0.3614 17 9 4.7428 -5.5274 0.4971 18 9 4.0245 -7.2141 -0.8657 19 9 3.6009 -5.0384 -1.4202 20 6 1.8139 -3.6527 -0.2008 21 1 -0.4850 0.8400 0.0004 22 1 -0.6770 -2.6411 0.7346 23 1 0.0967 -1.3359 1.6677 24 1 1.3473 -2.9697 2.9972 25 1 -0.3828 -3.3859 3.0512 26 1 0.9808 -5.4072 2.6475 27 1 -0.0284 -5.0422 1.2276 28 1 2.4930 -6.7121 1.2343 29 1 1.6033 -6.3310 -0.2596 30 1 1.0403 -4.0599 -0.8518 31 1 2.7333 -3.5124 -0.7693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335554514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:15 Heat of formation + Delta-G solvation = -165.677135 kcal Electronic energy + Delta-G solvation = -17922.331872 eV Core-core repulsion = 14594.973869 eV Total energy + Delta-G solvation = -3327.358003 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.04686 -48.56472 -48.49740 -39.42385 -35.67226 -33.39674 -32.27241 -29.23745 -27.21881 -24.68824 -23.81038 -22.49036 -20.77513 -19.45650 -19.24485 -18.63146 -18.11439 -16.87687 -15.95267 -15.81577 -15.48182 -15.19145 -15.09160 -14.95197 -14.74443 -14.65346 -14.49254 -14.00418 -13.90918 -13.39096 -12.97789 -12.93491 -12.75972 -12.50632 -12.22956 -11.95938 -11.78725 -11.56096 -11.22210 -10.97896 -10.53649 -8.66807 -7.88127 -5.33284 1.44769 1.45786 1.56063 1.92068 2.50069 2.96579 3.11888 3.19443 3.26389 3.70710 4.00266 4.06950 4.10942 4.41678 4.56183 4.58003 4.72047 4.82806 4.95587 5.03251 5.14780 5.27252 5.36262 5.41309 5.56299 5.66526 5.79955 6.39196 7.15386 7.87575 8.37869 9.17790 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.030746 B = 0.008011 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.479764 B = 3494.357754 C = 4053.754599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.264 4.264 8 H 0.060 0.940 9 N -0.611 5.611 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.093 4.093 13 C -0.102 4.102 14 H 0.068 0.932 15 C -0.146 4.146 16 C 0.448 3.552 17 F -0.193 7.193 18 F -0.188 7.188 19 F -0.191 7.191 20 C 0.130 3.870 21 H 0.250 0.750 22 H -0.004 1.004 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.123 0.877 30 H 0.015 0.985 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -13.902 3.340 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.078 0.922 9 N -0.334 5.334 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.130 4.130 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.184 4.184 16 C 0.394 3.606 17 F -0.174 7.174 18 F -0.169 7.169 19 F -0.173 7.173 20 C 0.005 3.995 21 H 0.059 0.941 22 H 0.014 0.986 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.033 0.967 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.886 -13.761 3.309 14.677 hybrid contribution 0.468 1.308 -0.484 1.471 sum 4.353 -12.454 2.825 13.492 Atomic orbital electron populations 1.70185 1.06557 1.25821 1.55390 1.25775 0.96085 1.01406 1.01306 0.85322 0.78116 0.79688 0.77613 1.21154 1.21526 1.19704 1.19456 0.92656 0.86269 1.41018 0.92226 1.44319 1.35945 1.02230 1.50908 1.20657 0.87640 0.97845 0.89284 1.22033 1.00938 0.96332 0.97989 1.21376 0.96071 0.96686 0.98909 1.21573 0.99725 0.92808 0.98084 0.91336 1.22941 0.91958 1.00807 1.02741 1.21042 0.88600 0.72763 0.78219 1.93153 1.63662 1.90398 1.70234 1.93164 1.94551 1.40726 1.88489 1.93129 1.96120 1.67934 1.60101 1.21547 0.98014 0.86136 0.93787 0.94083 0.98551 0.93240 0.93308 0.90836 0.89237 0.91728 0.84206 0.85839 0.96727 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 11.19 21.65 0.24 -55.90 16 2 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 3 Si 0.96 45.93 29.59 68.60 2.03 47.96 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.26 -15.03 9.58 84.03 0.81 -14.22 16 8 H 0.06 3.37 7.88 -2.91 -0.02 3.35 16 9 N -0.61 -31.37 2.99 -699.09 -2.09 -33.46 16 10 C 0.17 8.28 5.30 86.36 0.46 8.74 16 11 C -0.13 -4.79 6.08 30.68 0.19 -4.60 16 12 C -0.09 -2.61 5.17 30.64 0.16 -2.45 16 13 C -0.10 -3.12 2.28 -10.70 -0.02 -3.15 16 14 H 0.07 2.29 7.67 -2.39 -0.02 2.27 16 15 C -0.15 -3.18 4.85 30.59 0.15 -3.04 16 16 C 0.45 11.73 3.15 71.98 0.23 11.96 16 17 F -0.19 -5.53 16.71 44.97 0.75 -4.78 16 18 F -0.19 -4.56 17.32 44.97 0.78 -3.78 16 19 F -0.19 -6.13 13.91 44.97 0.63 -5.51 16 20 C 0.13 5.43 5.03 86.36 0.43 5.86 16 21 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.05 2.73 6.07 -2.39 -0.01 2.72 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 2.65 5.38 -2.39 -0.01 2.64 16 Total: -1.00 -65.37 259.84 6.27 -59.10 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: 1.13 Total: -0.26 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 2.81 Total: -3.37 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.85 Total: -89.36 kcal Atomic # 9 Polarization: -16.23 SS G_CDS: 2.16 Total: -14.07 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -65.37 6.27 -59.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335554514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.579 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds