Wall clock time and date at job start Sun Mar 29 2020 22:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41384 * 126.57742 * 2 1 4 4 C 1.34514 * 106.83589 * 180.23759 * 3 2 1 5 5 O 1.34302 * 108.42420 * 359.77037 * 4 3 2 6 6 C 1.34302 * 109.47506 * 0.02562 * 5 4 3 7 7 C 1.50705 * 125.79098 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47086 * 270.02877 * 7 6 5 9 9 C 1.47960 * 111.00148 * 169.99982 * 8 7 6 10 10 C 1.53936 * 86.18087 * 222.41298 * 9 8 7 11 11 O 1.42891 * 113.73211 * 269.25467 * 10 9 8 12 12 C 1.50696 * 113.73108 * 138.07348 * 10 9 8 13 13 H 1.07999 * 120.00319 * 1.90416 * 12 10 9 14 14 C 1.37885 * 119.99717 * 181.89799 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.48184 * 111.07654 * 70.56111 * 8 7 6 21 21 H 1.09002 * 109.46823 * 270.16049 * 1 2 3 22 22 H 1.08996 * 109.47105 * 30.15969 * 1 2 3 23 23 H 1.09000 * 109.46974 * 150.16397 * 1 2 3 24 24 H 1.07997 * 126.57928 * 359.97438 * 3 2 1 25 25 H 1.08003 * 125.78674 * 179.79123 * 4 3 2 26 26 H 1.08995 * 109.47077 * 150.02601 * 7 6 5 27 27 H 1.09004 * 109.46878 * 30.02232 * 7 6 5 28 28 H 1.08999 * 113.76188 * 108.09043 * 9 8 7 29 29 H 1.09010 * 113.75297 * 336.73243 * 9 8 7 30 30 H 0.96701 * 114.00462 * 178.10004 * 11 10 9 31 31 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 32 32 H 1.09004 * 113.75438 * 23.24158 * 20 8 7 33 33 H 1.08998 * 113.83040 * 251.81313 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 -0.0053 5 8 3.5848 -0.6616 -0.0034 6 6 2.3087 -1.0802 0.0025 7 6 1.8522 -2.5164 0.0058 8 7 1.6985 -2.9845 -1.3781 9 6 1.4848 -4.4479 -1.4223 10 6 2.4588 -4.4505 -2.6144 11 8 1.8169 -4.2970 -3.8817 12 6 3.4449 -5.5897 -2.5894 13 1 3.4012 -6.3245 -1.7992 14 6 4.4028 -5.6940 -3.5757 15 7 5.2631 -6.6886 -3.5543 16 14 4.4786 -4.4227 -4.9422 17 1 3.6223 -4.8605 -6.0738 18 1 3.9926 -3.1162 -4.4304 19 1 5.8812 -4.2808 -5.4089 20 6 3.0161 -3.1360 -2.0389 21 1 -0.3633 0.0029 1.0277 22 1 -0.3633 0.8885 -0.5163 23 1 -0.3633 -0.8915 -0.5113 24 1 2.0367 2.1690 -0.0004 25 1 4.5060 1.2923 -0.0100 26 1 0.8960 -2.5925 0.5234 27 1 2.5924 -3.1317 0.5173 28 1 0.4671 -4.7355 -1.6861 29 1 1.8627 -4.9735 -0.5452 30 1 2.4275 -4.2689 -4.6311 31 1 5.9367 -6.7621 -4.2483 32 1 3.8429 -3.2770 -1.3427 33 1 3.2197 -2.3772 -2.7945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336218166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:53 Heat of formation + Delta-G solvation = 14.479416 kcal Electronic energy + Delta-G solvation = -17122.103217 eV Core-core repulsion = 14344.414128 eV Total energy + Delta-G solvation = -2777.689089 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.38485 -39.28306 -35.05386 -33.91474 -32.43027 -31.24081 -28.78189 -27.02045 -25.42974 -25.30605 -22.32468 -21.20860 -19.40290 -19.07353 -17.37865 -16.73920 -16.16650 -15.97634 -15.07875 -14.75680 -14.38362 -13.71628 -13.31557 -12.98672 -12.88634 -12.71601 -12.61851 -12.23513 -12.12260 -11.97837 -11.51896 -11.04307 -10.88883 -10.59985 -10.50439 -9.96929 -9.44202 -9.36376 -8.90939 -8.64660 -8.13415 -8.02344 -6.32752 -4.37086 1.92481 2.74270 3.07791 3.17111 3.22039 3.22767 4.14359 4.59899 4.79236 4.92168 5.05463 5.10002 5.36101 5.52250 5.57608 5.62794 5.75479 5.76858 5.91969 5.97935 6.00029 6.20567 6.24475 6.36858 6.43918 6.63371 6.73557 6.87839 6.90516 7.33352 7.38096 7.66298 8.15046 8.69185 8.69442 9.26815 10.79721 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033096 B = 0.007421 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.811893 B = 3772.357216 C = 4037.247189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.174 4.174 3 C -0.214 4.214 4 C -0.048 4.048 5 O -0.173 6.173 6 C 0.006 3.994 7 C 0.096 3.904 8 N -0.474 5.474 9 C 0.024 3.976 10 C 0.201 3.799 11 O -0.552 6.552 12 C -0.537 4.537 13 H 0.086 0.914 14 C 0.078 3.922 15 N -0.882 5.882 16 Si 0.857 3.143 17 H -0.268 1.268 18 H -0.252 1.252 19 H -0.286 1.286 20 C -0.025 4.025 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.143 0.857 25 H 0.198 0.802 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.349 0.651 31 H 0.269 0.731 32 H 0.074 0.926 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 12.517 6.558 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.176 4.176 3 C -0.233 4.233 4 C -0.116 4.116 5 O -0.068 6.068 6 C -0.044 4.044 7 C -0.032 4.032 8 N -0.197 5.197 9 C -0.104 4.104 10 C 0.161 3.839 11 O -0.362 6.362 12 C -0.575 4.575 13 H 0.104 0.896 14 C -0.126 4.126 15 N -0.519 5.519 16 Si 0.686 3.314 17 H -0.194 1.194 18 H -0.177 1.177 19 H -0.212 1.212 20 C -0.154 4.154 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.161 0.839 25 H 0.215 0.785 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.200 0.800 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.745 12.671 6.588 15.394 hybrid contribution 1.368 0.484 -0.652 1.590 sum -4.378 13.154 5.936 15.081 Atomic orbital electron populations 1.20147 0.89374 1.02873 1.01337 1.20154 0.97106 0.91801 1.08517 1.21656 0.92746 0.99554 1.09328 1.23899 0.99558 0.80967 1.07128 1.84046 1.29179 1.22494 1.71104 1.22153 0.80572 0.96417 1.05298 1.21131 1.00521 0.87191 0.94373 1.68755 1.24695 1.15417 1.10821 1.24033 1.00998 0.87274 0.98061 1.20448 0.90233 0.91606 0.81653 1.86445 1.37782 1.96187 1.15756 1.21385 1.12875 1.10438 1.12775 0.89617 1.24999 0.94967 0.95123 0.97506 1.69876 1.17771 1.30017 1.34192 0.87342 0.77881 0.83175 0.83049 1.19442 1.17665 1.21227 1.25074 0.90800 1.00657 0.98883 0.92139 0.92018 0.90874 0.83903 0.78528 0.88354 0.92559 0.89733 0.90562 0.80000 0.92116 0.90745 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.00 36.01 0.36 -0.65 16 2 C -0.17 -2.63 6.16 -104.74 -0.65 -3.27 16 3 C -0.21 -2.89 10.87 -39.70 -0.43 -3.32 16 4 C -0.05 -0.65 12.09 29.42 0.36 -0.29 16 5 O -0.17 -2.94 10.65 5.72 0.06 -2.88 16 6 C 0.01 0.10 6.36 -35.62 -0.23 -0.12 16 7 C 0.10 1.60 4.97 -4.97 -0.02 1.57 16 8 N -0.47 -9.40 6.25 -239.47 -1.50 -10.90 16 9 C 0.02 0.50 7.37 -2.76 -0.02 0.48 16 10 C 0.20 4.86 1.05 -90.84 -0.10 4.77 16 11 O -0.55 -13.75 13.35 -35.23 -0.47 -14.22 16 12 C -0.54 -14.72 9.19 -34.44 -0.32 -15.04 16 13 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.88 -25.90 13.96 55.43 0.77 -25.13 16 16 Si 0.86 20.29 24.30 -169.99 -4.13 16.16 16 17 H -0.27 -6.12 7.05 56.52 0.40 -5.73 16 18 H -0.25 -5.76 5.15 56.52 0.29 -5.47 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.03 -0.56 5.96 -2.63 -0.02 -0.57 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.97 7.78 -51.93 -0.40 0.57 16 24 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 25 H 0.20 1.85 8.06 -52.48 -0.42 1.43 16 26 H 0.10 1.40 7.77 -51.93 -0.40 0.99 16 27 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 28 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.08 1.46 7.74 -51.92 -0.40 1.06 16 30 H 0.35 8.38 3.57 45.56 0.16 8.54 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.07 1.67 7.74 -51.93 -0.40 1.27 16 33 H 0.07 1.68 6.82 -51.93 -0.35 1.32 16 LS Contribution 273.35 15.07 4.12 4.12 Total: -1.00 -30.78 273.35 -6.29 -37.07 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -3.99 Total: 10.13 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -1.16 Total: -14.36 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.72 Total: -36.03 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.41 Total: -17.10 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.13 Total: 16.16 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.78 -6.29 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336218166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.553 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds