Wall clock time and date at job start Sun Mar 29 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41384 * 126.57742 * 2 1 4 4 C 1.34514 * 106.83589 * 180.23759 * 3 2 1 5 5 O 1.34302 * 108.42420 * 359.77037 * 4 3 2 6 6 C 1.34302 * 109.47506 * 0.02562 * 5 4 3 7 7 C 1.50705 * 125.79098 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47086 * 270.02877 * 7 6 5 9 9 C 1.47960 * 111.00148 * 169.99982 * 8 7 6 10 10 C 1.53936 * 86.18087 * 222.41298 * 9 8 7 11 11 O 1.42891 * 113.73211 * 269.25467 * 10 9 8 12 12 C 1.50696 * 113.73108 * 138.07348 * 10 9 8 13 13 H 1.07999 * 120.00319 * 1.90416 * 12 10 9 14 14 C 1.37885 * 119.99717 * 181.89799 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.48184 * 111.07654 * 70.56111 * 8 7 6 21 21 H 1.09002 * 109.46823 * 270.16049 * 1 2 3 22 22 H 1.08996 * 109.47105 * 30.15969 * 1 2 3 23 23 H 1.09000 * 109.46974 * 150.16397 * 1 2 3 24 24 H 1.07997 * 126.57928 * 359.97438 * 3 2 1 25 25 H 1.08003 * 125.78674 * 179.79123 * 4 3 2 26 26 H 1.08995 * 109.47077 * 150.02601 * 7 6 5 27 27 H 1.09004 * 109.46878 * 30.02232 * 7 6 5 28 28 H 1.08999 * 113.76188 * 108.09043 * 9 8 7 29 29 H 1.09010 * 113.75297 * 336.73243 * 9 8 7 30 30 H 0.96701 * 114.00462 * 178.10004 * 11 10 9 31 31 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 32 32 H 1.09004 * 113.75438 * 23.24158 * 20 8 7 33 33 H 1.08998 * 113.83040 * 251.81313 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 -0.0053 5 8 3.5848 -0.6616 -0.0034 6 6 2.3087 -1.0802 0.0025 7 6 1.8522 -2.5164 0.0058 8 7 1.6985 -2.9845 -1.3781 9 6 1.4848 -4.4479 -1.4223 10 6 2.4588 -4.4505 -2.6144 11 8 1.8169 -4.2970 -3.8817 12 6 3.4449 -5.5897 -2.5894 13 1 3.4012 -6.3245 -1.7992 14 6 4.4028 -5.6940 -3.5757 15 7 5.2631 -6.6886 -3.5543 16 14 4.4786 -4.4227 -4.9422 17 1 3.6223 -4.8605 -6.0738 18 1 3.9926 -3.1162 -4.4304 19 1 5.8812 -4.2808 -5.4089 20 6 3.0161 -3.1360 -2.0389 21 1 -0.3633 0.0029 1.0277 22 1 -0.3633 0.8885 -0.5163 23 1 -0.3633 -0.8915 -0.5113 24 1 2.0367 2.1690 -0.0004 25 1 4.5060 1.2923 -0.0100 26 1 0.8960 -2.5925 0.5234 27 1 2.5924 -3.1317 0.5173 28 1 0.4671 -4.7355 -1.6861 29 1 1.8627 -4.9735 -0.5452 30 1 2.4275 -4.2689 -4.6311 31 1 5.9367 -6.7621 -4.2483 32 1 3.8429 -3.2770 -1.3427 33 1 3.2197 -2.3772 -2.7945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336218166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:52 Heat of formation + Delta-G solvation = -10.174843 kcal Electronic energy + Delta-G solvation = -17123.172305 eV Core-core repulsion = 14344.414128 eV Total energy + Delta-G solvation = -2778.758177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.50733 -40.99922 -36.83964 -35.06672 -34.55695 -32.55435 -30.10816 -28.56534 -27.14745 -26.80550 -23.92142 -22.30446 -20.91955 -20.54566 -19.38561 -18.11509 -17.84753 -17.39467 -16.63926 -16.22120 -15.79785 -15.23590 -15.09005 -14.82906 -14.09715 -13.99649 -13.86772 -13.78737 -13.51105 -13.30136 -12.86960 -12.80399 -12.48159 -12.32859 -12.17420 -11.91578 -11.21367 -10.97024 -10.53968 -10.47170 -9.76836 -9.24458 -8.46663 -6.56356 0.79079 1.19034 1.26781 1.33873 1.68312 2.14467 2.15218 2.76701 2.99951 3.57066 3.67527 3.95743 4.03562 4.08221 4.10763 4.32526 4.35290 4.56941 4.68169 4.73425 4.85457 4.87515 4.91010 4.97943 5.09604 5.24610 5.27846 5.30419 5.34205 5.73025 5.99280 6.07247 6.28505 6.48793 6.75139 7.11544 8.69092 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033096 B = 0.007421 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.811893 B = 3772.357216 C = 4037.247189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.173 4.173 3 C -0.222 4.222 4 C -0.047 4.047 5 O -0.200 6.200 6 C -0.034 4.034 7 C 0.099 3.901 8 N -0.469 5.469 9 C 0.032 3.968 10 C 0.185 3.815 11 O -0.556 6.556 12 C -0.546 4.546 13 H 0.052 0.948 14 C 0.025 3.975 15 N -0.927 5.927 16 Si 0.917 3.083 17 H -0.251 1.251 18 H -0.240 1.240 19 H -0.283 1.283 20 C -0.013 4.013 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.171 0.829 25 H 0.234 0.766 26 H 0.124 0.876 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.351 0.649 31 H 0.272 0.728 32 H 0.065 0.935 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 15.009 6.557 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.175 4.175 3 C -0.241 4.241 4 C -0.114 4.114 5 O -0.097 6.097 6 C -0.084 4.084 7 C -0.029 4.029 8 N -0.192 5.192 9 C -0.096 4.096 10 C 0.144 3.856 11 O -0.367 6.367 12 C -0.584 4.584 13 H 0.071 0.929 14 C -0.175 4.175 15 N -0.565 5.565 16 Si 0.742 3.258 17 H -0.176 1.176 18 H -0.165 1.165 19 H -0.209 1.209 20 C -0.142 4.142 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.189 0.811 25 H 0.250 0.750 26 H 0.142 0.858 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.202 0.798 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.787 15.165 6.598 17.877 hybrid contribution 1.679 -0.275 -0.556 1.790 sum -5.108 14.890 6.042 16.862 Atomic orbital electron populations 1.20216 0.87737 1.03053 1.02659 1.20621 0.98423 0.91886 1.06559 1.22046 0.92429 1.00542 1.09085 1.24754 1.01309 0.79997 1.05337 1.84020 1.29579 1.24269 1.71820 1.22183 0.81060 0.96651 1.08499 1.21146 1.01829 0.87598 0.92312 1.68680 1.22734 1.14675 1.13155 1.23999 1.00795 0.88123 0.96671 1.20616 0.91070 0.91358 0.82533 1.86437 1.37989 1.96172 1.16063 1.21590 1.13933 1.10936 1.11968 0.92947 1.25815 0.94456 0.97125 1.00113 1.70007 1.18819 1.32152 1.35521 0.86354 0.78271 0.80937 0.80257 1.17624 1.16461 1.20910 1.24781 0.91785 0.98998 0.98684 0.90198 0.90615 0.91876 0.81110 0.74979 0.85806 0.93040 0.88484 0.89752 0.79777 0.91857 0.91685 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 10.00 71.24 0.71 -1.06 16 2 C -0.17 -4.80 6.16 -19.94 -0.12 -4.93 16 3 C -0.22 -5.33 10.87 22.19 0.24 -5.09 16 4 C -0.05 -1.16 12.09 66.97 0.81 -0.35 16 5 O -0.20 -6.56 10.65 -2.47 -0.03 -6.59 16 6 C -0.03 -1.11 6.36 24.83 0.16 -0.95 16 7 C 0.10 3.17 4.97 85.56 0.43 3.59 16 8 N -0.47 -18.03 6.25 -914.76 -5.72 -23.75 16 9 C 0.03 1.29 7.37 86.41 0.64 1.93 16 10 C 0.18 8.86 1.05 -10.89 -0.01 8.85 16 11 O -0.56 -27.03 13.35 -148.98 -1.99 -29.01 16 12 C -0.55 -30.59 9.19 25.60 0.24 -30.36 16 13 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 14 C 0.03 1.43 5.47 84.66 0.46 1.89 16 15 N -0.93 -55.74 13.96 21.45 0.30 -55.44 16 16 Si 0.92 41.75 24.30 68.60 1.67 43.42 16 17 H -0.25 -10.70 7.05 99.48 0.70 -10.00 16 18 H -0.24 -10.43 5.15 99.48 0.51 -9.92 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 C -0.01 -0.57 5.96 86.37 0.51 -0.06 16 21 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.06 1.52 7.78 -2.39 -0.02 1.51 16 24 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 25 H 0.23 3.59 8.06 -2.91 -0.02 3.57 16 26 H 0.12 3.26 7.77 -2.39 -0.02 3.24 16 27 H 0.05 1.69 7.70 -2.39 -0.02 1.67 16 28 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 29 H 0.08 3.20 7.74 -2.38 -0.02 3.18 16 30 H 0.35 16.26 3.57 -74.06 -0.26 15.99 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.06 2.95 7.74 -2.38 -0.02 2.93 16 33 H 0.06 2.94 6.82 -2.39 -0.02 2.93 16 Total: -1.00 -66.62 273.35 -1.06 -67.67 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.65 Total: 30.23 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.06 Total: -26.53 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -5.42 Total: -79.19 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -2.01 Total: -35.60 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.67 Total: 43.42 kcal Total: -66.62 -1.06 -67.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336218166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.498 kcal (2) G-P(sol) polarization free energy of solvation -66.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds