Wall clock time and date at job start Sun Mar 29 2020 21:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76201 * 103.00100 * 2 1 4 4 C 1.38995 * 120.08073 * 359.97438 * 3 2 1 5 5 C 1.38059 * 119.92243 * 179.97438 * 4 3 2 6 6 C 1.38326 * 120.07654 * 0.02562 * 5 4 3 7 7 C 1.38279 * 120.16416 * 0.02562 * 6 5 4 8 8 C 1.38100 * 120.07979 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.04301 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47628 * 260.00377 * 9 8 7 11 11 C 1.46503 * 120.00088 * 269.99837 * 10 9 8 12 12 C 1.36937 * 120.00282 * 89.99621 * 10 9 8 13 13 H 1.07998 * 119.99734 * 21.64882 * 12 10 9 14 14 C 1.38811 * 120.00285 * 201.65258 * 12 10 9 15 15 N 1.31622 * 120.00105 * 14.61268 * 14 12 10 16 16 Si 1.86798 * 120.00082 * 194.61474 * 14 12 10 17 17 H 1.48501 * 109.46922 * 90.00266 * 16 14 12 18 18 H 1.48502 * 109.47388 * 209.99539 * 16 14 12 19 19 H 1.48498 * 109.47362 * 330.00080 * 16 14 12 20 20 H 1.08995 * 109.47153 * 59.99506 * 1 2 3 21 21 H 1.08997 * 109.47327 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46714 * 299.99737 * 1 2 3 23 23 H 1.08001 * 120.03605 * 0.03980 * 4 3 2 24 24 H 1.08000 * 119.96111 * 180.29749 * 5 4 3 25 25 H 1.08008 * 119.91468 * 179.97438 * 6 5 4 26 26 H 1.07994 * 119.96005 * 179.97438 * 7 6 5 27 27 H 1.09006 * 109.47326 * 20.00387 * 9 8 7 28 28 H 1.09001 * 109.47222 * 139.99828 * 9 8 7 29 29 H 1.09009 * 109.47039 * 91.80417 * 11 10 9 30 30 H 1.08993 * 109.47611 * 211.80410 * 11 10 9 31 31 H 1.09000 * 109.47277 * 331.80735 * 11 10 9 32 32 H 0.96991 * 120.00577 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0005 5 6 1.5095 4.0106 0.0000 6 6 2.8329 4.4131 0.0005 7 6 3.8455 3.4715 0.0000 8 6 3.5387 2.1250 -0.0005 9 6 4.6429 1.0995 -0.0005 10 7 4.8381 0.5919 -1.3608 11 6 4.0854 -0.5776 -1.8213 12 6 5.7240 1.2106 -2.2020 13 1 6.5163 1.8223 -1.7966 14 6 5.6038 1.0514 -3.5757 15 7 4.4957 0.5579 -4.0865 16 14 7.0145 1.5377 -4.6993 17 1 7.9163 0.3739 -4.8936 18 1 6.4744 1.9700 -6.0134 19 1 7.7745 2.6555 -4.0845 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.1617 2.3526 -0.0003 24 1 0.7212 4.7488 0.0044 25 1 3.0758 5.4655 0.0005 26 1 4.8776 3.7894 0.0000 27 1 5.5662 1.5598 0.3515 28 1 4.3732 0.2752 0.6597 29 1 3.1633 -0.2501 -2.3017 30 1 4.6875 -1.1391 -2.5355 31 1 3.8451 -1.2136 -0.9694 32 1 4.4114 0.4470 -5.0464 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358051510.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:37 Heat of formation + Delta-G solvation = 49.898536 kcal Electronic energy + Delta-G solvation = -14883.235945 eV Core-core repulsion = 12549.835616 eV Total energy + Delta-G solvation = -2333.400329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.59648 -35.42918 -31.98931 -30.74815 -29.95463 -28.48246 -26.00254 -25.47240 -22.20050 -21.85877 -20.19755 -17.07489 -16.53447 -15.55857 -14.90352 -14.60702 -14.10020 -13.79550 -13.65018 -13.31883 -13.08411 -12.83403 -12.16382 -12.03222 -11.71577 -11.28601 -11.04996 -10.80790 -10.68184 -10.48813 -10.15007 -10.03984 -9.85486 -9.40095 -9.10230 -8.46744 -8.20923 -6.88110 -6.55418 -5.68431 -3.10405 1.81779 1.96423 2.08485 2.96360 3.40932 3.46845 3.48140 4.27149 4.56153 5.28975 5.31189 5.33127 5.39909 5.46523 5.61640 5.80650 5.85758 5.91020 6.06848 6.19345 6.41944 6.56898 6.67303 6.82179 6.97130 7.01588 7.25585 7.50986 7.52142 7.83253 7.95986 8.43515 9.27651 9.90421 10.40280 11.36054 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.009328 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.290606 B = 3001.024744 C = 3562.055859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 S -0.087 6.087 3 C -0.078 4.078 4 C -0.138 4.138 5 C -0.124 4.124 6 C -0.128 4.128 7 C -0.094 4.094 8 C -0.059 4.059 9 C 0.176 3.824 10 N -0.586 5.586 11 C 0.165 3.835 12 C -0.253 4.253 13 H 0.069 0.931 14 C 0.003 3.997 15 N -0.899 5.899 16 Si 0.903 3.097 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.280 1.280 20 H 0.078 0.922 21 H 0.099 0.901 22 H 0.073 0.927 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.004 0.996 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.673 2.094 8.933 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 S 0.156 5.844 3 C -0.192 4.192 4 C -0.162 4.162 5 C -0.145 4.145 6 C -0.149 4.149 7 C -0.115 4.115 8 C -0.068 4.068 9 C 0.048 3.952 10 N -0.306 5.306 11 C 0.021 3.979 12 C -0.382 4.382 13 H 0.087 0.913 14 C -0.196 4.196 15 N -0.544 5.544 16 Si 0.733 3.267 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.205 1.205 20 H 0.097 0.903 21 H 0.118 0.882 22 H 0.092 0.908 23 H 0.131 0.869 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.023 0.977 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.067 0.914 8.728 10.668 hybrid contribution -0.380 1.644 -0.973 1.948 sum -6.447 2.558 7.755 10.404 Atomic orbital electron populations 1.23723 0.98646 1.06085 1.04704 1.85920 1.02578 1.03752 1.92148 1.21521 0.96234 0.96080 1.05325 1.20968 0.97476 0.93376 1.04415 1.20770 0.96269 0.94941 1.02478 1.21038 0.92999 0.98943 1.01932 1.20918 0.98964 0.92176 0.99453 1.20907 0.94000 0.96103 0.95812 1.20024 0.93350 0.92838 0.88970 1.44150 1.46888 1.29826 1.09743 1.20954 0.95983 0.86741 0.94266 1.19238 1.04242 1.27511 0.87241 0.91312 1.25023 0.96745 1.00813 0.97011 1.70107 1.24009 1.49150 1.11086 0.86272 0.81879 0.78190 0.80311 1.21472 1.21839 1.20504 0.90298 0.88216 0.90816 0.86945 0.86933 0.86840 0.86199 0.92634 0.92919 0.94483 0.93848 0.97737 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.15 101.05 0.92 -1.24 16 2 S -0.09 -1.56 17.25 -107.50 -1.85 -3.42 16 3 C -0.08 -1.54 6.11 -39.03 -0.24 -1.77 16 4 C -0.14 -2.41 9.36 -39.37 -0.37 -2.78 16 5 C -0.12 -2.03 10.04 -39.61 -0.40 -2.43 16 6 C -0.13 -2.17 10.04 -39.53 -0.40 -2.57 16 7 C -0.09 -1.80 9.66 -39.62 -0.38 -2.19 16 8 C -0.06 -1.23 5.48 -104.41 -0.57 -1.80 16 9 C 0.18 3.82 5.39 -5.20 -0.03 3.79 16 10 N -0.59 -15.08 2.91 -182.50 -0.53 -15.61 16 11 C 0.17 4.19 7.27 59.85 0.44 4.63 16 12 C -0.25 -7.03 9.66 -15.06 -0.15 -7.17 16 13 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 14 C 0.00 0.09 5.04 -17.43 -0.09 0.00 16 15 N -0.90 -26.73 10.74 55.49 0.60 -26.13 16 16 Si 0.90 22.18 29.58 -169.99 -5.03 17.15 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H 0.08 1.06 7.75 -51.93 -0.40 0.65 16 21 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.07 0.86 7.75 -51.92 -0.40 0.46 16 23 H 0.11 1.68 5.88 -52.49 -0.31 1.37 16 24 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 25 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 26 H 0.12 2.15 8.04 -52.49 -0.42 1.73 16 27 H 0.06 1.14 7.89 -51.93 -0.41 0.73 16 28 H 0.05 1.08 6.99 -51.93 -0.36 0.72 16 29 H 0.04 1.01 6.87 -51.92 -0.36 0.66 16 30 H 0.04 1.19 7.07 -51.93 -0.37 0.82 16 31 H 0.00 0.10 6.68 -51.93 -0.35 -0.25 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 274.36 15.07 4.13 4.13 Total: -1.00 -30.84 274.36 -8.13 -38.98 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.19 Total: -1.57 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.26 Total: -13.53 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.07 Total: -41.75 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -1.85 Total: -3.42 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.84 -8.13 -38.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358051510.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.875 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds