Wall clock time and date at job start Sun Mar 29 2020 21:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76201 * 103.00100 * 2 1 4 4 C 1.38995 * 120.08073 * 359.97438 * 3 2 1 5 5 C 1.38059 * 119.92243 * 179.97438 * 4 3 2 6 6 C 1.38326 * 120.07654 * 0.02562 * 5 4 3 7 7 C 1.38279 * 120.16416 * 0.02562 * 6 5 4 8 8 C 1.38100 * 120.07979 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.04301 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47628 * 260.00377 * 9 8 7 11 11 C 1.46503 * 120.00088 * 269.99837 * 10 9 8 12 12 C 1.36937 * 120.00282 * 89.99621 * 10 9 8 13 13 H 1.07998 * 119.99734 * 21.64882 * 12 10 9 14 14 C 1.38811 * 120.00285 * 201.65258 * 12 10 9 15 15 N 1.31622 * 120.00105 * 14.61268 * 14 12 10 16 16 Si 1.86798 * 120.00082 * 194.61474 * 14 12 10 17 17 H 1.48501 * 109.46922 * 90.00266 * 16 14 12 18 18 H 1.48502 * 109.47388 * 209.99539 * 16 14 12 19 19 H 1.48498 * 109.47362 * 330.00080 * 16 14 12 20 20 H 1.08995 * 109.47153 * 59.99506 * 1 2 3 21 21 H 1.08997 * 109.47327 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46714 * 299.99737 * 1 2 3 23 23 H 1.08001 * 120.03605 * 0.03980 * 4 3 2 24 24 H 1.08000 * 119.96111 * 180.29749 * 5 4 3 25 25 H 1.08008 * 119.91468 * 179.97438 * 6 5 4 26 26 H 1.07994 * 119.96005 * 179.97438 * 7 6 5 27 27 H 1.09006 * 109.47326 * 20.00387 * 9 8 7 28 28 H 1.09001 * 109.47222 * 139.99828 * 9 8 7 29 29 H 1.09009 * 109.47039 * 91.80417 * 11 10 9 30 30 H 1.08993 * 109.47611 * 211.80410 * 11 10 9 31 31 H 1.09000 * 109.47277 * 331.80735 * 11 10 9 32 32 H 0.96991 * 120.00577 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0005 5 6 1.5095 4.0106 0.0000 6 6 2.8329 4.4131 0.0005 7 6 3.8455 3.4715 0.0000 8 6 3.5387 2.1250 -0.0005 9 6 4.6429 1.0995 -0.0005 10 7 4.8381 0.5919 -1.3608 11 6 4.0854 -0.5776 -1.8213 12 6 5.7240 1.2106 -2.2020 13 1 6.5163 1.8223 -1.7966 14 6 5.6038 1.0514 -3.5757 15 7 4.4957 0.5579 -4.0865 16 14 7.0145 1.5377 -4.6993 17 1 7.9163 0.3739 -4.8936 18 1 6.4744 1.9700 -6.0134 19 1 7.7745 2.6555 -4.0845 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.1617 2.3526 -0.0003 24 1 0.7212 4.7488 0.0044 25 1 3.0758 5.4655 0.0005 26 1 4.8776 3.7894 0.0000 27 1 5.5662 1.5598 0.3515 28 1 4.3732 0.2752 0.6597 29 1 3.1633 -0.2501 -2.3017 30 1 4.6875 -1.1391 -2.5355 31 1 3.8451 -1.2136 -0.9694 32 1 4.4114 0.4470 -5.0464 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358051510.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:37 Heat of formation + Delta-G solvation = 32.815594 kcal Electronic energy + Delta-G solvation = -14883.976717 eV Core-core repulsion = 12549.835616 eV Total energy + Delta-G solvation = -2334.141101 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.02364 -37.30984 -33.83120 -32.10872 -31.69802 -29.60368 -27.96165 -27.30944 -23.67274 -23.56494 -21.82924 -18.76796 -18.27480 -17.03067 -16.69558 -16.19003 -15.61441 -15.44733 -15.09237 -14.80282 -14.57826 -14.38010 -13.56133 -13.47739 -13.24467 -13.08415 -12.81450 -12.61918 -12.47502 -12.06725 -11.99406 -11.90850 -11.77284 -10.82340 -10.67017 -10.38755 -9.64605 -8.80580 -8.08569 -7.79952 -5.25239 0.42662 0.56319 0.78944 1.45968 1.47769 1.55839 1.70152 2.51942 2.88205 3.34384 3.90835 3.99558 4.11265 4.22899 4.30254 4.33183 4.47799 4.63448 4.72087 4.86880 4.89469 4.99890 5.05875 5.21284 5.38113 5.47168 5.62821 5.66514 5.78790 5.86538 6.15447 6.34232 7.17257 7.88274 8.34136 9.23593 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.009328 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.290606 B = 3001.024744 C = 3562.055859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.141 6.141 3 C -0.092 4.092 4 C -0.146 4.146 5 C -0.117 4.117 6 C -0.131 4.131 7 C -0.111 4.111 8 C -0.091 4.091 9 C 0.179 3.821 10 N -0.602 5.602 11 C 0.190 3.810 12 C -0.259 4.259 13 H 0.071 0.929 14 C -0.052 4.052 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.286 1.286 18 H -0.297 1.297 19 H -0.268 1.268 20 H 0.079 0.921 21 H 0.121 0.879 22 H 0.094 0.906 23 H 0.138 0.862 24 H 0.151 0.849 25 H 0.145 0.855 26 H 0.122 0.878 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.013 0.987 30 H 0.011 0.989 31 H 0.026 0.974 32 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 3.519 9.748 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.101 5.899 3 C -0.205 4.205 4 C -0.170 4.170 5 C -0.137 4.137 6 C -0.152 4.152 7 C -0.132 4.132 8 C -0.099 4.099 9 C 0.053 3.947 10 N -0.324 5.324 11 C 0.045 3.955 12 C -0.389 4.389 13 H 0.089 0.911 14 C -0.247 4.247 15 N -0.580 5.580 16 Si 0.795 3.205 17 H -0.213 1.213 18 H -0.224 1.224 19 H -0.192 1.192 20 H 0.098 0.902 21 H 0.140 0.860 22 H 0.113 0.887 23 H 0.156 0.844 24 H 0.169 0.831 25 H 0.163 0.837 26 H 0.140 0.860 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.213 2.359 9.590 12.230 hybrid contribution -0.145 1.243 -1.070 1.646 sum -7.358 3.602 8.521 11.820 Atomic orbital electron populations 1.23764 0.93892 1.07920 1.05716 1.85926 1.07787 1.03955 1.92183 1.21735 0.96413 0.96943 1.05457 1.21369 0.98267 0.93641 1.03723 1.21283 0.97078 0.95337 0.99995 1.21420 0.92829 1.00130 1.00775 1.21138 1.00005 0.92194 0.99824 1.20796 0.94249 0.96457 0.98412 1.20003 0.94218 0.93604 0.86914 1.44239 1.47160 1.30373 1.10605 1.20591 0.94136 0.86745 0.94066 1.19536 1.04771 1.26748 0.87820 0.91080 1.25750 0.98961 1.01643 0.98368 1.70274 1.25819 1.51153 1.10756 0.85274 0.79114 0.78061 0.78059 1.21297 1.22394 1.19234 0.90225 0.86025 0.88679 0.84429 0.83113 0.83715 0.86015 0.92268 0.92237 0.96866 0.97005 0.95580 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.15 113.37 1.04 -2.42 16 2 S -0.14 -4.99 17.25 -56.49 -0.97 -5.96 16 3 C -0.09 -3.53 6.11 22.62 0.14 -3.40 16 4 C -0.15 -4.70 9.36 22.41 0.21 -4.49 16 5 C -0.12 -3.40 10.04 22.25 0.22 -3.18 16 6 C -0.13 -4.07 10.04 22.30 0.22 -3.85 16 7 C -0.11 -4.14 9.66 22.25 0.21 -3.93 16 8 C -0.09 -3.76 5.48 -19.73 -0.11 -3.87 16 9 C 0.18 7.86 5.39 85.63 0.46 8.32 16 10 N -0.60 -31.58 2.91 -731.32 -2.13 -33.71 16 11 C 0.19 9.91 7.27 127.77 0.93 10.84 16 12 C -0.26 -14.57 9.66 84.03 0.81 -13.76 16 13 H 0.07 3.87 7.86 -2.91 -0.02 3.85 16 14 C -0.05 -2.99 5.04 84.86 0.43 -2.56 16 15 N -0.93 -56.95 10.74 21.65 0.23 -56.71 16 16 Si 0.97 46.19 29.58 68.60 2.03 48.22 16 17 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 18 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 H 0.08 1.92 7.75 -2.39 -0.02 1.90 16 21 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.09 1.88 7.75 -2.39 -0.02 1.86 16 23 H 0.14 3.62 5.88 -2.91 -0.02 3.60 16 24 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 25 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 26 H 0.12 4.33 8.04 -2.91 -0.02 4.31 16 27 H 0.06 2.47 7.89 -2.38 -0.02 2.45 16 28 H 0.06 2.47 6.99 -2.39 -0.02 2.46 16 29 H 0.01 0.74 6.87 -2.38 -0.02 0.72 16 30 H 0.01 0.65 7.07 -2.39 -0.02 0.63 16 31 H 0.03 1.21 6.68 -2.39 -0.02 1.20 16 32 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -67.24 274.36 4.83 -62.41 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.10 Total: 8.05 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 4.57 Total: -22.30 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -1.89 Total: -90.42 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -0.97 Total: -5.96 kcal Total: -67.24 4.83 -62.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358051510.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.224 kcal (2) G-P(sol) polarization free energy of solvation -67.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds