Wall clock time and date at job start Sun Mar 29 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47130 * 299.99939 * 3 2 1 6 6 H 1.48501 * 109.46776 * 59.99946 * 3 2 1 7 7 C 1.37880 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99680 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99807 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46838 * 179.97438 * 9 7 2 11 11 C 1.47010 * 111.00342 * 66.04467 * 10 9 7 12 12 C 1.53099 * 109.26375 * 182.39377 * 11 10 9 13 13 O 1.43013 * 109.25452 * 303.15118 * 12 11 10 14 14 C 1.43015 * 113.74057 * 58.66806 * 13 12 11 15 15 C 1.47019 * 111.00228 * 189.67909 * 10 9 7 16 16 H 1.08997 * 109.50566 * 297.54330 * 15 10 9 17 17 C 1.50706 * 109.50489 * 57.67162 * 15 10 9 18 18 C 1.34511 * 125.78825 * 219.50258 * 17 15 10 19 19 C 1.41387 * 106.83808 * 179.89065 * 18 17 15 20 20 C 1.34510 * 106.83973 * 0.36569 * 19 18 17 21 21 O 1.34302 * 125.78650 * 39.80463 * 17 15 10 22 22 H 0.97012 * 119.99509 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47431 * 60.00169 * 9 7 2 24 24 H 1.09001 * 109.47549 * 299.99768 * 9 7 2 25 25 H 1.09004 * 109.50766 * 62.45507 * 11 10 9 26 26 H 1.09005 * 109.54286 * 302.35432 * 11 10 9 27 27 H 1.08995 * 109.50568 * 183.21515 * 12 11 10 28 28 H 1.08996 * 109.53788 * 63.10228 * 12 11 10 29 29 H 1.09007 * 109.50806 * 61.26305 * 14 13 12 30 30 H 1.09004 * 109.50893 * 181.39269 * 14 13 12 31 31 H 1.08000 * 126.58151 * 0.02562 * 18 17 15 32 32 H 1.07995 * 126.57754 * 180.11948 * 19 18 17 33 33 H 1.08000 * 125.78699 * 179.74643 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2054 -3.6157 -0.0027 11 6 2.9713 -3.6553 1.2515 12 6 3.9927 -4.7938 1.1839 13 8 3.3108 -6.0244 0.9269 14 6 2.5552 -6.0213 -0.2873 15 6 1.5193 -4.8952 -0.2346 16 1 0.8173 -5.0842 0.5775 17 6 0.7731 -4.8362 -1.5426 18 6 -0.4462 -5.3537 -1.7766 19 6 -0.7603 -5.0684 -3.1253 20 6 0.2894 -4.4007 -3.6370 21 8 1.2152 -4.2630 -2.6738 22 1 -0.4850 0.8402 -0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6238 -2.5575 0.8880 25 1 2.2925 -3.8244 2.0874 26 1 3.4915 -2.7076 1.3911 27 1 4.5236 -4.8633 2.1332 28 1 4.7045 -4.5979 0.3821 29 1 3.2248 -5.8606 -1.1324 30 1 2.0466 -6.9786 -0.4020 31 1 -1.0672 -5.8833 -1.0693 32 1 -1.6671 -5.3385 -3.6460 33 1 0.3736 -4.0375 -4.6506 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375787747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:35 Heat of formation + Delta-G solvation = -19.761625 kcal Electronic energy + Delta-G solvation = -17337.406146 eV Core-core repulsion = 14558.232254 eV Total energy + Delta-G solvation = -2779.173892 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.10172 -39.01017 -35.35015 -32.82242 -32.42600 -31.57235 -28.63444 -27.73198 -25.34927 -23.64206 -21.84397 -21.35931 -20.53397 -19.34276 -17.05514 -16.52092 -15.89685 -15.76269 -15.16233 -14.65689 -14.49276 -14.43523 -13.92776 -13.20452 -12.89164 -12.36109 -12.26288 -12.13558 -11.90018 -11.47184 -11.12935 -10.96185 -10.78879 -10.59611 -10.26875 -9.94262 -9.52560 -9.41987 -9.11419 -8.47666 -7.96004 -7.43824 -6.05077 -4.06759 2.21930 3.02999 3.28868 3.36228 3.40644 3.48483 4.14022 4.36915 4.63392 5.09907 5.25100 5.32070 5.40342 5.46857 5.48416 5.60194 5.64959 5.75922 5.99453 6.02154 6.18016 6.29743 6.38897 6.50611 6.52611 6.89241 7.16157 7.23804 7.40439 7.61922 7.75274 7.98047 8.08081 8.44335 8.99681 9.56986 11.05837 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.009778 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.464825 B = 2862.872548 C = 3935.566745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.526 5.526 11 C 0.028 3.972 12 C 0.059 3.941 13 O -0.388 6.388 14 C 0.075 3.925 15 C 0.123 3.877 16 H 0.068 0.932 17 C 0.026 3.974 18 C -0.222 4.222 19 C -0.218 4.218 20 C -0.046 4.046 21 O -0.150 6.150 22 H 0.261 0.739 23 H 0.037 0.963 24 H -0.009 1.009 25 H 0.033 0.967 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 -10.551 -2.503 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.252 5.252 11 C -0.100 4.100 12 C -0.017 4.017 13 O -0.307 6.307 14 C -0.003 4.003 15 C 0.013 3.987 16 H 0.085 0.915 17 C -0.025 4.025 18 C -0.242 4.242 19 C -0.237 4.237 20 C -0.114 4.114 21 O -0.044 6.044 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.009 0.991 25 H 0.051 0.949 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.910 -10.360 -2.786 11.115 hybrid contribution -0.701 1.158 0.355 1.400 sum 2.208 -9.202 -2.430 9.770 Atomic orbital electron populations 1.69985 1.06063 1.26667 1.50837 1.24987 0.94863 0.99309 0.95393 0.86441 0.80065 0.83399 0.77521 1.19623 1.21001 1.21088 1.21130 0.93452 0.89741 1.50222 0.91788 1.19791 0.89927 0.86977 0.96353 1.62488 1.27820 1.01457 1.33484 1.22669 0.96517 0.99784 0.91062 1.22800 0.94268 0.83560 1.01108 1.87917 1.65479 1.35690 1.41598 1.22636 0.92772 0.97334 0.87517 1.20811 0.94684 0.93667 0.89523 0.91483 1.22025 0.94920 0.98101 0.87501 1.21467 0.96922 1.08319 0.97477 1.21667 1.00692 1.05814 0.95514 1.23969 0.89358 1.03829 0.94266 1.84148 1.41705 1.60493 1.18064 0.92962 0.94552 0.99090 0.94900 0.88410 0.88966 0.92466 0.92141 0.88818 0.84021 0.84002 0.78670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.29 8.48 -34.44 -0.29 -14.58 16 8 H 0.06 1.78 7.12 -52.49 -0.37 1.40 16 9 C 0.19 5.14 4.54 -4.98 -0.02 5.12 16 10 N -0.53 -11.56 4.52 -229.16 -1.03 -12.59 16 11 C 0.03 0.54 5.46 -3.71 -0.02 0.52 16 12 C 0.06 0.94 7.01 37.21 0.26 1.20 16 13 O -0.39 -6.46 10.83 -35.23 -0.38 -6.85 16 14 C 0.07 1.20 6.27 37.21 0.23 1.44 16 15 C 0.12 2.32 2.44 -68.75 -0.17 2.16 16 16 H 0.07 1.28 8.13 -51.93 -0.42 0.85 16 17 C 0.03 0.50 4.50 -35.62 -0.16 0.34 16 18 C -0.22 -3.81 10.80 -39.70 -0.43 -4.24 16 19 C -0.22 -3.42 10.91 -39.70 -0.43 -3.86 16 20 C -0.05 -0.74 12.09 29.41 0.36 -0.39 16 21 O -0.15 -3.00 10.38 5.71 0.06 -2.94 16 22 H 0.26 7.37 8.31 -40.81 -0.34 7.03 16 23 H 0.04 1.06 6.49 -51.93 -0.34 0.72 16 24 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.10 1.97 6.81 -51.93 -0.35 1.62 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.20 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 277.69 15.07 4.18 4.18 Total: -1.00 -31.75 277.69 -6.65 -38.41 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.43 Total: 0.04 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.77 Total: -10.79 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.30 Total: -38.73 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.32 Total: -9.78 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.75 -6.65 -38.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375787747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.648 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds