Wall clock time and date at job start Sun Mar 29 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47130 * 299.99939 * 3 2 1 6 6 H 1.48501 * 109.46776 * 59.99946 * 3 2 1 7 7 C 1.37880 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99680 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99807 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46838 * 179.97438 * 9 7 2 11 11 C 1.47010 * 111.00342 * 66.04467 * 10 9 7 12 12 C 1.53099 * 109.26375 * 182.39377 * 11 10 9 13 13 O 1.43013 * 109.25452 * 303.15118 * 12 11 10 14 14 C 1.43015 * 113.74057 * 58.66806 * 13 12 11 15 15 C 1.47019 * 111.00228 * 189.67909 * 10 9 7 16 16 H 1.08997 * 109.50566 * 297.54330 * 15 10 9 17 17 C 1.50706 * 109.50489 * 57.67162 * 15 10 9 18 18 C 1.34511 * 125.78825 * 219.50258 * 17 15 10 19 19 C 1.41387 * 106.83808 * 179.89065 * 18 17 15 20 20 C 1.34510 * 106.83973 * 0.36569 * 19 18 17 21 21 O 1.34302 * 125.78650 * 39.80463 * 17 15 10 22 22 H 0.97012 * 119.99509 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47431 * 60.00169 * 9 7 2 24 24 H 1.09001 * 109.47549 * 299.99768 * 9 7 2 25 25 H 1.09004 * 109.50766 * 62.45507 * 11 10 9 26 26 H 1.09005 * 109.54286 * 302.35432 * 11 10 9 27 27 H 1.08995 * 109.50568 * 183.21515 * 12 11 10 28 28 H 1.08996 * 109.53788 * 63.10228 * 12 11 10 29 29 H 1.09007 * 109.50806 * 61.26305 * 14 13 12 30 30 H 1.09004 * 109.50893 * 181.39269 * 14 13 12 31 31 H 1.08000 * 126.58151 * 0.02562 * 18 17 15 32 32 H 1.07995 * 126.57754 * 180.11948 * 19 18 17 33 33 H 1.08000 * 125.78699 * 179.74643 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2054 -3.6157 -0.0027 11 6 2.9713 -3.6553 1.2515 12 6 3.9927 -4.7938 1.1839 13 8 3.3108 -6.0244 0.9269 14 6 2.5552 -6.0213 -0.2873 15 6 1.5193 -4.8952 -0.2346 16 1 0.8173 -5.0842 0.5775 17 6 0.7731 -4.8362 -1.5426 18 6 -0.4462 -5.3537 -1.7766 19 6 -0.7603 -5.0684 -3.1253 20 6 0.2894 -4.4007 -3.6370 21 8 1.2152 -4.2630 -2.6738 22 1 -0.4850 0.8402 -0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6238 -2.5575 0.8880 25 1 2.2925 -3.8244 2.0874 26 1 3.4915 -2.7076 1.3911 27 1 4.5236 -4.8633 2.1332 28 1 4.7045 -4.5979 0.3821 29 1 3.2248 -5.8606 -1.1324 30 1 2.0466 -6.9786 -0.4020 31 1 -1.0672 -5.8833 -1.0693 32 1 -1.6671 -5.3385 -3.6460 33 1 0.3736 -4.0375 -4.6506 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375787747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:35 Heat of formation + Delta-G solvation = -42.322165 kcal Electronic energy + Delta-G solvation = -17338.384444 eV Core-core repulsion = 14558.232254 eV Total energy + Delta-G solvation = -2780.152190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.46123 -40.46264 -36.98005 -34.73847 -33.95638 -33.01083 -30.32373 -29.25365 -27.16478 -25.05144 -23.76649 -22.70510 -21.95642 -20.79645 -18.69378 -18.32913 -17.39988 -17.22801 -16.56316 -16.38994 -16.06115 -15.92846 -15.53043 -14.75472 -14.50316 -14.09881 -13.69012 -13.65200 -13.42003 -13.03432 -12.81169 -12.72911 -12.58015 -12.23947 -12.09906 -11.54410 -11.36950 -10.84937 -10.69053 -10.63404 -9.31436 -9.22263 -8.24067 -6.34566 0.86270 1.38355 1.39214 1.52818 1.74337 2.17065 2.37233 2.85787 3.00870 3.10091 3.74529 3.87534 4.04152 4.14429 4.20233 4.26986 4.32108 4.37915 4.67943 4.71602 4.89719 4.91046 4.96439 5.02042 5.11494 5.20198 5.21529 5.56389 5.67016 5.95008 6.07129 6.15634 6.29206 6.48954 6.79976 7.34783 8.87622 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.009778 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.464825 B = 2862.872548 C = 3935.566745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.216 3.784 10 N -0.534 5.534 11 C 0.025 3.975 12 C 0.069 3.931 13 O -0.390 6.390 14 C 0.083 3.917 15 C 0.121 3.879 16 H 0.060 0.940 17 C -0.008 4.008 18 C -0.223 4.223 19 C -0.221 4.221 20 C -0.053 4.053 21 O -0.181 6.181 22 H 0.264 0.736 23 H 0.006 0.994 24 H -0.043 1.043 25 H 0.024 0.976 26 H 0.085 0.915 27 H 0.127 0.873 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -10.983 -2.960 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.083 0.917 9 C 0.090 3.910 10 N -0.260 5.260 11 C -0.103 4.103 12 C -0.008 4.008 13 O -0.308 6.308 14 C 0.006 3.994 15 C 0.011 3.989 16 H 0.078 0.922 17 C -0.059 4.059 18 C -0.243 4.243 19 C -0.239 4.239 20 C -0.121 4.121 21 O -0.077 6.077 22 H 0.073 0.927 23 H 0.024 0.976 24 H -0.026 1.026 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.145 0.855 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.177 0.823 32 H 0.192 0.808 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.805 -10.821 -3.236 11.918 hybrid contribution -1.044 1.245 0.464 1.690 sum 2.761 -9.575 -2.772 10.344 Atomic orbital electron populations 1.70117 1.07829 1.27835 1.51647 1.25936 0.95735 1.03267 0.94682 0.85307 0.79057 0.78379 0.77722 1.18458 1.20514 1.20275 1.21437 0.93624 0.90806 1.50196 0.91683 1.19329 0.89850 0.88661 0.93171 1.62376 1.26988 1.01765 1.34860 1.22753 0.96852 1.01000 0.89675 1.22844 0.92994 0.81785 1.03180 1.87923 1.65442 1.35692 1.41784 1.22681 0.92035 0.97382 0.87298 1.20930 0.95364 0.92941 0.89625 0.92224 1.22160 0.96116 0.99948 0.87656 1.21859 0.96251 1.07517 0.98670 1.22085 1.01687 1.05228 0.94935 1.24816 0.88860 1.03316 0.95063 1.84101 1.43305 1.61329 1.18941 0.92704 0.97625 1.02583 0.95728 0.89653 0.85548 0.91923 0.92222 0.85939 0.82296 0.80828 0.75197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.52 -30.12 8.48 25.60 0.22 -29.90 16 8 H 0.07 3.65 7.12 -2.91 -0.02 3.63 16 9 C 0.22 11.93 4.54 85.56 0.39 12.32 16 10 N -0.53 -24.00 4.52 -878.93 -3.97 -27.97 16 11 C 0.03 0.98 5.46 86.32 0.47 1.45 16 12 C 0.07 2.05 7.01 72.02 0.50 2.56 16 13 O -0.39 -12.22 10.83 -148.98 -1.61 -13.83 16 14 C 0.08 2.57 6.27 72.01 0.45 3.02 16 15 C 0.12 4.62 2.44 44.18 0.11 4.73 16 16 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 17 C -0.01 -0.31 4.50 24.83 0.11 -0.20 16 18 C -0.22 -7.54 10.80 22.19 0.24 -7.30 16 19 C -0.22 -6.60 10.91 22.19 0.24 -6.36 16 20 C -0.05 -1.68 12.09 66.97 0.81 -0.87 16 21 O -0.18 -7.30 10.38 -2.50 -0.03 -7.32 16 22 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 23 H 0.01 0.35 6.49 -2.39 -0.02 0.33 16 24 H -0.04 -2.63 8.12 -2.39 -0.02 -2.65 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 3.48 6.81 -2.38 -0.02 3.47 16 27 H 0.13 2.94 8.14 -2.39 -0.02 2.93 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 31 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 32 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.23 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -69.71 277.69 1.80 -67.91 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.09 Total: 11.46 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.01 Total: -19.98 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -3.68 Total: -84.91 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -1.64 Total: -21.16 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -69.71 1.80 -67.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375787747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.591 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds