Wall clock time and date at job start Sun Mar 29 2020 21:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21311 * 120.00478 * 2 1 4 4 C 1.46652 * 119.99666 * 179.71621 * 2 1 3 5 5 C 1.40089 * 120.23053 * 354.36746 * 4 2 1 6 6 C 1.37807 * 119.87150 * 179.78495 * 5 4 2 7 7 F 1.35104 * 119.82568 * 180.22784 * 6 5 4 8 8 C 1.38878 * 120.34619 * 0.47140 * 6 5 4 9 9 C 1.37942 * 120.46582 * 359.78235 * 8 6 5 10 10 C 1.38937 * 120.11543 * 359.97438 * 9 8 6 11 11 N 1.38819 * 120.16623 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00100 * 5.37355 * 11 10 9 13 13 C 1.50706 * 109.46993 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99562 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00126 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99693 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00239 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46982 * 59.99841 * 17 15 13 19 19 H 1.48495 * 109.47567 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46981 * 300.00254 * 17 15 13 21 21 H 1.09003 * 109.47736 * 180.27616 * 1 2 3 22 22 H 1.09001 * 109.47383 * 300.28484 * 1 2 3 23 23 H 1.08999 * 109.46967 * 60.27992 * 1 2 3 24 24 H 1.08000 * 120.06346 * 0.02562 * 5 4 2 25 25 H 1.07993 * 119.76630 * 179.76175 * 8 6 5 26 26 H 1.07994 * 119.93951 * 179.97438 * 9 8 6 27 27 H 0.97000 * 119.99210 * 185.38108 * 11 10 9 28 28 H 1.09000 * 109.47150 * 300.00065 * 12 11 10 29 29 H 1.08995 * 109.46916 * 60.00463 * 12 11 10 30 30 H 0.97001 * 119.99660 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2402 -1.2701 0.0063 5 6 1.5496 -2.4825 0.1311 6 6 2.2456 -3.6719 0.1317 7 9 1.5783 -4.8409 0.2475 8 6 3.6298 -3.6749 0.0189 9 6 4.3244 -2.4891 -0.0994 10 6 3.6417 -1.2790 -0.1072 11 7 4.3398 -0.0850 -0.2257 12 6 5.7856 -0.1020 -0.4610 13 6 6.2969 1.3130 -0.5494 14 1 5.6129 2.1419 -0.4415 15 6 7.6373 1.5492 -0.7690 16 7 8.4699 0.5397 -0.9008 17 14 8.2709 3.3030 -0.8792 18 1 7.9851 4.0134 0.3932 19 1 9.7365 3.2859 -1.1176 20 1 7.5947 4.0040 -2.0002 21 1 -0.3635 -1.0276 0.0050 22 1 -0.3634 0.5182 0.8874 23 1 -0.3633 0.5095 -0.8925 24 1 0.4735 -2.4853 0.2228 25 1 4.1661 -4.6122 0.0243 26 1 5.4008 -2.5013 -0.1861 27 1 3.8701 0.7606 -0.1527 28 1 6.2816 -0.6164 0.3621 29 1 5.9956 -0.6235 -1.3948 30 1 9.4129 0.7060 -1.0556 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380073466.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:28 Heat of formation + Delta-G solvation = -59.325223 kcal Electronic energy + Delta-G solvation = -16080.567040 eV Core-core repulsion = 13176.217237 eV Total energy + Delta-G solvation = -2904.349803 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.42162 -39.93003 -37.73367 -35.13369 -32.67404 -31.84781 -29.23767 -29.01577 -26.24487 -23.94342 -22.86138 -20.97574 -19.83897 -17.43036 -17.22735 -16.12295 -15.95231 -15.26813 -14.92768 -14.72525 -14.70949 -14.39705 -13.91125 -13.58101 -13.29571 -12.62482 -12.34037 -12.12480 -12.02549 -12.01420 -11.61219 -11.14017 -10.93719 -10.92942 -10.25373 -9.57275 -9.49958 -9.23735 -8.87816 -8.58976 -6.77098 -6.25986 -4.31213 0.93957 1.79526 2.63528 3.23916 3.27658 3.30938 4.04486 4.17572 4.28683 4.43362 4.71432 4.88299 5.08480 5.11634 5.27272 5.45186 5.58752 5.61772 5.85664 6.05136 6.12246 6.29416 6.52927 6.55278 6.91069 7.16062 7.25871 7.56627 7.74747 7.88268 8.12401 8.61494 8.84862 9.35360 10.84607 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.006376 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.186033 B = 4390.650759 C = 5305.555994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.401 3.599 3 O -0.476 6.476 4 C -0.268 4.268 5 C -0.053 4.053 6 C -0.011 4.011 7 F -0.154 7.154 8 C -0.065 4.065 9 C -0.186 4.186 10 C 0.281 3.719 11 N -0.688 5.688 12 C 0.237 3.763 13 C -0.541 4.541 14 H 0.065 0.935 15 C 0.065 3.935 16 N -0.890 5.890 17 Si 0.906 3.094 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.274 1.274 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.135 0.865 25 H 0.132 0.868 26 H 0.142 0.858 27 H 0.414 0.586 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 -6.103 1.637 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.284 3.716 3 O -0.354 6.354 4 C -0.275 4.275 5 C -0.072 4.072 6 C -0.032 4.032 7 F -0.133 7.133 8 C -0.086 4.086 9 C -0.209 4.209 10 C 0.160 3.840 11 N -0.315 5.315 12 C 0.115 3.885 13 C -0.579 4.579 14 H 0.083 0.917 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.733 3.267 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.200 1.200 21 H 0.100 0.900 22 H 0.108 0.892 23 H 0.109 0.891 24 H 0.153 0.847 25 H 0.149 0.851 26 H 0.159 0.841 27 H 0.260 0.740 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.889 -5.501 1.565 13.193 hybrid contribution 0.195 0.758 -0.043 0.784 sum -11.694 -4.743 1.522 12.711 Atomic orbital electron populations 1.22167 0.94272 1.04374 1.04516 1.22074 0.91388 0.87290 0.70846 1.90277 1.70793 1.34579 1.39706 1.19500 0.92214 0.94427 1.21365 1.21008 0.99615 0.90148 0.96427 1.17104 0.90270 0.81049 1.14826 1.91421 1.80719 1.46322 1.94837 1.21048 0.92177 0.98946 0.96399 1.20744 1.00975 0.90058 1.09088 1.18323 0.89747 0.88351 0.87558 1.46588 1.10866 1.06056 1.67944 1.19368 0.73998 0.98558 0.96528 1.21145 0.93741 0.91531 1.51472 0.91733 1.24916 0.96403 0.98019 0.94499 1.69925 1.04104 1.30780 1.47967 0.86423 0.77643 0.83733 0.78903 1.19949 1.20982 1.19952 0.90050 0.89175 0.89115 0.84704 0.85051 0.84069 0.73975 0.95432 0.95439 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 10.19 36.00 0.37 -1.68 16 2 C 0.40 6.29 7.20 -30.92 -0.22 6.07 16 3 O -0.48 -9.21 14.39 5.53 0.08 -9.13 16 4 C -0.27 -4.39 5.88 -104.91 -0.62 -5.01 16 5 C -0.05 -0.73 9.39 -39.05 -0.37 -1.10 16 6 C -0.01 -0.16 7.28 -39.50 -0.29 -0.45 16 7 F -0.15 -2.22 17.26 2.25 0.04 -2.18 16 8 C -0.07 -0.98 10.00 -39.45 -0.39 -1.37 16 9 C -0.19 -3.26 9.30 -39.43 -0.37 -3.62 16 10 C 0.28 5.38 6.66 -83.54 -0.56 4.83 16 11 N -0.69 -15.32 5.58 -59.56 -0.33 -15.65 16 12 C 0.24 5.98 4.69 -5.19 -0.02 5.95 16 13 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 14 H 0.06 1.77 7.60 -52.48 -0.40 1.37 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 17 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H 0.08 0.67 5.63 -51.93 -0.29 0.38 16 22 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.14 1.42 5.97 -52.49 -0.31 1.11 16 25 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.14 2.55 6.71 -52.49 -0.35 2.19 16 27 H 0.41 9.45 4.84 -40.95 -0.20 9.26 16 28 H 0.03 0.73 7.73 -51.93 -0.40 0.33 16 29 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 265.95 15.07 4.01 4.01 Total: -1.00 -29.31 265.95 -6.16 -35.46 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -2.78 Total: 5.90 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.89 Total: -9.92 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.40 Total: -40.23 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.31 -6.16 -35.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380073466.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.861 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds