Wall clock time and date at job start Sun Mar 29 2020 22:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47378 * 332.85631 * 3 2 1 5 5 C 1.37095 * 120.00025 * 263.82060 * 4 3 2 6 6 H 1.07994 * 120.00081 * 201.38717 * 5 4 3 7 7 C 1.38958 * 119.99628 * 21.39114 * 5 4 3 8 8 N 1.31408 * 120.00349 * 10.88263 * 7 5 4 9 9 Si 1.86800 * 119.99661 * 190.88150 * 7 5 4 10 10 H 1.48496 * 109.47271 * 90.00279 * 9 7 5 11 11 H 1.48504 * 109.46910 * 210.00199 * 9 7 5 12 12 H 1.48507 * 109.47161 * 329.99848 * 9 7 5 13 13 C 1.34768 * 119.99979 * 83.82428 * 4 3 2 14 14 O 1.21296 * 120.00126 * 184.82961 * 13 4 3 15 15 C 1.50703 * 120.00416 * 4.83262 * 13 4 3 16 16 H 1.09004 * 110.44977 * 329.53671 * 15 13 4 17 17 C 1.54474 * 110.63049 * 92.22353 * 15 13 4 18 18 O 1.44430 * 104.80120 * 142.68701 * 17 15 13 19 19 C 1.44430 * 105.27260 * 319.48573 * 18 17 15 20 20 H 1.09006 * 110.46695 * 281.63371 * 19 18 17 21 21 C 1.53002 * 110.37043 * 159.34561 * 19 18 17 22 22 C 1.54479 * 104.80370 * 40.51267 * 19 18 17 23 23 H 4.40637 * 5.51345 * 180.02562 * 4 1 2 24 24 H 1.09005 * 109.47039 * 212.85414 * 3 2 1 25 25 H 1.09000 * 109.47047 * 92.86092 * 3 2 1 26 26 H 0.96993 * 120.00153 * 180.02562 * 8 7 5 27 27 H 1.09005 * 110.37044 * 261.51365 * 17 15 13 28 28 H 1.08996 * 110.37436 * 23.74349 * 17 15 13 29 29 H 1.08997 * 109.46762 * 304.62307 * 21 19 18 30 30 H 1.08991 * 109.46977 * 184.61598 * 21 19 18 31 31 H 1.09004 * 109.46902 * 64.62111 * 21 19 18 32 32 H 1.09009 * 110.50850 * 94.66275 * 22 19 18 33 33 H 1.08995 * 110.51359 * 217.37196 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2282 0.6301 5 6 3.4840 -1.2267 1.9559 6 1 4.1487 -1.9862 2.3402 7 6 2.9823 -0.2480 2.8053 8 7 2.0149 0.5426 2.3979 9 14 3.6832 -0.0562 4.5261 10 1 4.8163 0.9031 4.4950 11 1 2.6271 0.4546 5.4366 12 1 4.1632 -1.3738 5.0148 13 6 3.2417 -2.3601 -0.0935 14 8 3.5624 -3.3975 0.4470 15 6 2.9628 -2.3370 -1.5743 16 1 2.2193 -1.5755 -1.8100 17 6 4.2636 -2.0879 -2.3694 18 8 4.1388 -2.9122 -3.5488 19 6 3.5573 -4.1511 -3.0873 20 1 4.3152 -4.7740 -2.6119 21 6 2.9072 -4.9007 -4.2519 22 6 2.4875 -3.7255 -2.0574 23 1 -1.0497 -0.0004 0.0000 24 1 3.0090 0.8642 0.5575 25 1 3.0093 0.0521 -1.0264 26 1 1.6650 1.2260 2.9907 27 1 4.3429 -1.0369 -2.6476 28 1 5.1308 -2.3909 -1.7827 29 1 2.1812 -4.2517 -4.7415 30 1 2.4032 -5.7906 -3.8750 31 1 3.6743 -5.1937 -4.9688 32 1 1.5090 -3.6504 -2.5320 33 1 2.4566 -4.4294 -1.2257 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389585668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:07 Heat of formation + Delta-G solvation = -16.612218 kcal Electronic energy + Delta-G solvation = -17206.346491 eV Core-core repulsion = 14427.309168 eV Total energy + Delta-G solvation = -2779.037323 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.76300 -37.88691 -35.20578 -32.33142 -31.90653 -31.35024 -30.92876 -26.55126 -25.80060 -24.82963 -22.29723 -20.95408 -18.73810 -17.87485 -16.99478 -16.47251 -15.61913 -15.28972 -14.96735 -14.43680 -14.01431 -13.92812 -13.02571 -12.90636 -12.48558 -12.34552 -12.16289 -11.75828 -11.73723 -11.41644 -11.06333 -10.93696 -10.62897 -10.51296 -10.31445 -10.27358 -9.50928 -9.42857 -9.30862 -8.86830 -8.46363 -7.89135 -6.33159 -3.95084 3.12405 3.22764 3.27306 3.58998 3.85092 4.04296 4.11329 4.18821 4.84692 4.94163 5.01600 5.10476 5.36447 5.45774 5.49355 5.52684 5.60789 5.73326 5.89361 6.00667 6.04373 6.15636 6.26117 6.33259 6.36982 6.46876 6.79565 7.04317 7.09722 7.50804 8.01749 8.38713 8.80173 9.08714 9.30368 9.84937 10.66178 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034565 B = 0.007435 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.862022 B = 3765.097036 C = 4166.445714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.109 4.109 3 C 0.231 3.769 4 N -0.439 5.439 5 C -0.310 4.310 6 H 0.102 0.898 7 C 0.029 3.971 8 N -0.872 5.872 9 Si 0.928 3.072 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.460 3.540 14 O -0.580 6.580 15 C -0.139 4.139 16 H 0.093 0.907 17 C 0.063 3.937 18 O -0.377 6.377 19 C 0.071 3.929 20 H 0.069 0.931 21 C -0.144 4.144 22 C -0.133 4.133 23 H 0.199 0.801 24 H 0.117 0.883 25 H 0.058 0.942 26 H 0.269 0.731 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 -1.668 -8.789 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.111 4.111 3 C 0.108 3.892 4 N -0.157 5.157 5 C -0.438 4.438 6 H 0.120 0.880 7 C -0.174 4.174 8 N -0.510 5.510 9 Si 0.755 3.245 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.248 3.752 14 O -0.464 6.464 15 C -0.161 4.161 16 H 0.111 0.889 17 C -0.014 4.014 18 O -0.296 6.296 19 C 0.013 3.987 20 H 0.087 0.913 21 C -0.201 4.201 22 C -0.171 4.171 23 H 0.216 0.784 24 H 0.134 0.866 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.389 -1.955 -8.619 8.846 hybrid contribution -0.267 0.364 1.257 1.335 sum 0.121 -1.591 -7.362 7.533 Atomic orbital electron populations 1.24267 0.95390 1.02603 1.06184 1.23180 0.94363 0.98137 0.95371 1.18333 0.84240 0.91112 0.95523 1.43666 1.55747 1.06529 1.09770 1.19700 1.26660 1.14113 0.83277 0.88035 1.25370 0.95157 0.96955 0.99915 1.69970 1.23595 1.20500 1.36971 0.85891 0.78342 0.78782 0.81496 1.20299 1.20976 1.19434 1.19790 0.83897 0.83823 0.87716 1.90507 1.52872 1.30583 1.72434 1.22599 0.99048 0.99320 0.95158 0.88860 1.23266 0.96349 0.95818 0.85970 1.89050 1.83492 1.26817 1.30241 1.22989 0.94510 0.86857 0.94309 0.91259 1.21790 1.00733 0.99863 0.97698 1.22893 0.98502 0.96360 0.99361 0.78423 0.86551 0.92388 0.92045 0.88923 0.91772 0.91923 0.91272 0.92227 0.91005 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.53 19.25 29.55 0.57 -4.96 16 2 C -0.11 -2.44 10.78 -37.12 -0.40 -2.84 16 3 C 0.23 5.08 4.77 -6.83 -0.03 5.04 16 4 N -0.44 -10.96 2.60 -117.93 -0.31 -11.26 16 5 C -0.31 -8.41 9.29 -14.93 -0.14 -8.55 16 6 H 0.10 2.88 7.43 -52.49 -0.39 2.49 16 7 C 0.03 0.76 5.10 -17.47 -0.09 0.67 16 8 N -0.87 -22.63 9.05 55.50 0.50 -22.12 16 9 Si 0.93 20.41 29.57 -169.99 -5.03 15.39 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.46 11.01 6.57 -10.99 -0.07 10.94 16 14 O -0.58 -15.78 15.40 5.54 0.09 -15.69 16 15 C -0.14 -2.64 2.58 -90.20 -0.23 -2.87 16 16 H 0.09 1.71 6.07 -51.93 -0.32 1.40 16 17 C 0.06 1.07 7.06 37.93 0.27 1.34 16 18 O -0.38 -6.31 11.34 -35.23 -0.40 -6.71 16 19 C 0.07 1.09 3.92 -25.95 -0.10 0.99 16 20 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 21 C -0.14 -1.72 9.52 37.16 0.35 -1.37 16 22 C -0.13 -2.28 6.15 -25.16 -0.15 -2.44 16 23 H 0.20 3.36 7.80 -54.11 -0.42 2.94 16 24 H 0.12 2.70 6.37 -51.93 -0.33 2.37 16 25 H 0.06 1.06 6.47 -51.93 -0.34 0.73 16 26 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.09 1.36 8.02 -51.93 -0.42 0.95 16 28 H 0.06 1.14 7.86 -51.93 -0.41 0.73 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.10 7.87 -51.92 -0.41 0.69 16 33 H 0.09 1.78 6.85 -51.93 -0.36 1.42 16 LS Contribution 279.90 15.07 4.22 4.22 Total: -1.00 -30.46 279.90 -5.17 -35.63 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.21 Total: 4.61 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.03 Total: -4.05 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.20 Total: -33.39 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.31 Total: -22.40 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.46 -5.17 -35.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389585668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.019 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds