Wall clock time and date at job start Sun Mar 29 2020 22:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47378 * 332.85631 * 3 2 1 5 5 C 1.37095 * 120.00025 * 263.82060 * 4 3 2 6 6 H 1.07994 * 120.00081 * 201.38717 * 5 4 3 7 7 C 1.38958 * 119.99628 * 21.39114 * 5 4 3 8 8 N 1.31408 * 120.00349 * 10.88263 * 7 5 4 9 9 Si 1.86800 * 119.99661 * 190.88150 * 7 5 4 10 10 H 1.48496 * 109.47271 * 90.00279 * 9 7 5 11 11 H 1.48504 * 109.46910 * 210.00199 * 9 7 5 12 12 H 1.48507 * 109.47161 * 329.99848 * 9 7 5 13 13 C 1.34768 * 119.99979 * 83.82428 * 4 3 2 14 14 O 1.21296 * 120.00126 * 184.82961 * 13 4 3 15 15 C 1.50703 * 120.00416 * 4.83262 * 13 4 3 16 16 H 1.09004 * 110.44977 * 329.53671 * 15 13 4 17 17 C 1.54474 * 110.63049 * 92.22353 * 15 13 4 18 18 O 1.44430 * 104.80120 * 142.68701 * 17 15 13 19 19 C 1.44430 * 105.27260 * 319.48573 * 18 17 15 20 20 H 1.09006 * 110.46695 * 281.63371 * 19 18 17 21 21 C 1.53002 * 110.37043 * 159.34561 * 19 18 17 22 22 C 1.54479 * 104.80370 * 40.51267 * 19 18 17 23 23 H 4.40637 * 5.51345 * 180.02562 * 4 1 2 24 24 H 1.09005 * 109.47039 * 212.85414 * 3 2 1 25 25 H 1.09000 * 109.47047 * 92.86092 * 3 2 1 26 26 H 0.96993 * 120.00153 * 180.02562 * 8 7 5 27 27 H 1.09005 * 110.37044 * 261.51365 * 17 15 13 28 28 H 1.08996 * 110.37436 * 23.74349 * 17 15 13 29 29 H 1.08997 * 109.46762 * 304.62307 * 21 19 18 30 30 H 1.08991 * 109.46977 * 184.61598 * 21 19 18 31 31 H 1.09004 * 109.46902 * 64.62111 * 21 19 18 32 32 H 1.09009 * 110.50850 * 94.66275 * 22 19 18 33 33 H 1.08995 * 110.51359 * 217.37196 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2282 0.6301 5 6 3.4840 -1.2267 1.9559 6 1 4.1487 -1.9862 2.3402 7 6 2.9823 -0.2480 2.8053 8 7 2.0149 0.5426 2.3979 9 14 3.6832 -0.0562 4.5261 10 1 4.8163 0.9031 4.4950 11 1 2.6271 0.4546 5.4366 12 1 4.1632 -1.3738 5.0148 13 6 3.2417 -2.3601 -0.0935 14 8 3.5624 -3.3975 0.4470 15 6 2.9628 -2.3370 -1.5743 16 1 2.2193 -1.5755 -1.8100 17 6 4.2636 -2.0879 -2.3694 18 8 4.1388 -2.9122 -3.5488 19 6 3.5573 -4.1511 -3.0873 20 1 4.3152 -4.7740 -2.6119 21 6 2.9072 -4.9007 -4.2519 22 6 2.4875 -3.7255 -2.0574 23 1 -1.0497 -0.0004 0.0000 24 1 3.0090 0.8642 0.5575 25 1 3.0093 0.0521 -1.0264 26 1 1.6650 1.2260 2.9907 27 1 4.3429 -1.0369 -2.6476 28 1 5.1308 -2.3909 -1.7827 29 1 2.1812 -4.2517 -4.7415 30 1 2.4032 -5.7906 -3.8750 31 1 3.6743 -5.1937 -4.9688 32 1 1.5090 -3.6504 -2.5320 33 1 2.4566 -4.4294 -1.2257 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389585668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:07 Heat of formation + Delta-G solvation = -35.752624 kcal Electronic energy + Delta-G solvation = -17207.176481 eV Core-core repulsion = 14427.309168 eV Total energy + Delta-G solvation = -2779.867313 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33997 -39.50909 -37.11185 -34.15957 -33.20405 -33.08031 -32.42914 -28.34197 -27.13888 -26.58257 -23.88858 -22.24034 -20.43234 -19.69224 -18.70424 -18.22087 -17.14236 -16.64697 -16.59194 -15.96056 -15.78371 -15.69684 -14.68910 -14.19833 -14.17566 -14.01354 -13.47258 -13.36172 -13.02191 -12.88675 -12.77908 -12.55271 -12.32722 -12.19142 -11.74572 -11.71664 -11.27897 -11.06540 -10.81773 -10.62570 -10.36448 -9.83750 -8.30043 -6.00277 1.35688 1.41328 1.52184 1.81307 2.09703 2.31632 2.38435 2.81139 3.04491 3.19496 3.60374 3.78136 3.85811 3.96826 4.07233 4.22955 4.31589 4.47541 4.58487 4.68277 4.77467 4.85981 4.95271 5.02794 5.03990 5.09518 5.29151 5.42549 5.43272 5.80032 6.04627 6.42609 7.11091 7.13469 7.38139 7.93507 8.66379 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034565 B = 0.007435 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.862022 B = 3765.097036 C = 4166.445714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.151 4.151 3 C 0.233 3.767 4 N -0.450 5.450 5 C -0.347 4.347 6 H 0.074 0.926 7 C 0.000 4.000 8 N -0.879 5.879 9 Si 0.989 3.011 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.451 3.549 14 O -0.625 6.625 15 C -0.133 4.133 16 H 0.104 0.896 17 C 0.068 3.932 18 O -0.377 6.377 19 C 0.069 3.931 20 H 0.060 0.940 21 C -0.137 4.137 22 C -0.133 4.133 23 H 0.233 0.767 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.272 0.728 27 H 0.120 0.880 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 -1.015 -9.912 9.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.153 4.153 3 C 0.111 3.889 4 N -0.167 5.167 5 C -0.474 4.474 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.517 5.517 9 Si 0.813 3.187 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.241 3.759 14 O -0.512 6.512 15 C -0.155 4.155 16 H 0.122 0.878 17 C -0.009 4.009 18 O -0.296 6.296 19 C 0.011 3.989 20 H 0.078 0.922 21 C -0.194 4.194 22 C -0.171 4.171 23 H 0.249 0.751 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.442 -1.273 -9.770 9.863 hybrid contribution -0.064 0.151 1.618 1.627 sum -0.506 -1.122 -8.152 8.244 Atomic orbital electron populations 1.25146 0.96382 1.00782 1.04505 1.23478 0.95047 0.99797 0.96952 1.18373 0.84537 0.89139 0.96821 1.43873 1.55659 1.07828 1.09370 1.19624 1.27963 1.14741 0.85097 0.90761 1.26043 0.95125 0.96097 1.02968 1.70081 1.23493 1.20201 1.37890 0.84994 0.78131 0.78337 0.77224 1.18808 1.20235 1.20454 1.20627 0.82600 0.82934 0.89732 1.90467 1.54682 1.32131 1.73914 1.22575 1.00481 1.00874 0.91566 0.87797 1.23248 0.94546 0.97395 0.85755 1.89058 1.83571 1.27192 1.29807 1.23109 0.93857 0.86573 0.95314 0.92184 1.21786 1.01081 1.00075 0.96474 1.22919 1.00322 0.94689 0.99135 0.75080 0.88230 0.88893 0.91778 0.86229 0.93310 0.91185 0.89674 0.91031 0.88750 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.86 19.25 74.32 1.43 -8.43 16 2 C -0.15 -6.62 10.78 31.13 0.34 -6.28 16 3 C 0.23 10.18 4.77 84.57 0.40 10.58 16 4 N -0.45 -22.86 2.60 -645.41 -1.68 -24.53 16 5 C -0.35 -19.38 9.29 84.04 0.78 -18.60 16 6 H 0.07 4.45 7.43 -2.91 -0.02 4.43 16 7 C 0.00 0.02 5.10 84.93 0.43 0.45 16 8 N -0.88 -45.31 9.05 21.67 0.20 -45.12 16 9 Si 0.99 42.01 29.57 68.60 2.03 44.04 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 C 0.45 22.09 6.57 87.66 0.58 22.66 16 14 O -0.62 -35.45 15.40 -3.08 -0.05 -35.50 16 15 C -0.13 -4.95 2.58 -10.52 -0.03 -4.98 16 16 H 0.10 3.63 6.07 -2.38 -0.01 3.62 16 17 C 0.07 2.22 7.06 72.48 0.51 2.73 16 18 O -0.38 -11.88 11.34 -148.98 -1.69 -13.57 16 19 C 0.07 2.02 3.92 31.10 0.12 2.14 16 20 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 21 C -0.14 -2.91 9.52 71.98 0.69 -2.22 16 22 C -0.13 -4.43 6.15 31.61 0.19 -4.24 16 23 H 0.23 7.08 7.80 -4.43 -0.03 7.04 16 24 H 0.10 4.64 6.37 -2.38 -0.02 4.62 16 25 H 0.09 3.28 6.47 -2.39 -0.02 3.27 16 26 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 27 H 0.12 3.23 8.02 -2.38 -0.02 3.21 16 28 H 0.05 1.74 7.86 -2.39 -0.02 1.72 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.09 2.69 7.87 -2.38 -0.02 2.67 16 33 H 0.07 2.62 6.85 -2.39 -0.02 2.61 16 Total: -1.00 -66.44 279.90 5.35 -61.09 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.10 Total: 19.78 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 5.45 Total: -6.18 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -1.48 Total: -69.65 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -1.74 Total: -49.07 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -66.44 5.35 -61.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389585668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.337 kcal (2) G-P(sol) polarization free energy of solvation -66.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds