Wall clock time and date at job start Sun Mar 29 2020 22:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46628 * 175.91776 * 3 2 1 5 5 C 1.37099 * 119.99827 * 263.44582 * 4 3 2 6 6 H 1.08002 * 120.00176 * 141.20493 * 5 4 3 7 7 C 1.38952 * 119.99978 * 321.20513 * 5 4 3 8 8 N 1.31411 * 119.99790 * 340.98475 * 7 5 4 9 9 Si 1.86802 * 120.00124 * 160.99255 * 7 5 4 10 10 H 1.48505 * 109.47025 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47254 * 119.99767 * 9 7 5 12 12 H 1.48503 * 109.46839 * 239.99759 * 9 7 5 13 13 C 1.34775 * 120.00159 * 83.44667 * 4 3 2 14 14 O 1.21291 * 120.00021 * 5.49827 * 13 4 3 15 15 C 1.50709 * 120.00032 * 185.22428 * 13 4 3 16 16 H 1.09002 * 110.80056 * 32.66784 * 15 13 4 17 17 C 1.54993 * 110.90427 * 269.04610 * 15 13 4 18 18 O 1.44377 * 103.48730 * 204.77745 * 17 15 13 19 19 C 1.43746 * 106.98019 * 40.06018 * 18 17 15 20 20 H 1.08993 * 109.87780 * 92.90560 * 19 18 17 21 21 C 1.52998 * 109.88217 * 214.06214 * 19 18 17 22 22 C 1.54108 * 107.28880 * 333.48930 * 19 18 17 23 23 H 4.40635 * 5.51396 * 179.97438 * 4 1 2 24 24 H 1.08994 * 109.47317 * 55.91848 * 3 2 1 25 25 H 1.08999 * 109.47397 * 295.91267 * 3 2 1 26 26 H 0.97001 * 120.00025 * 179.97438 * 8 7 5 27 27 H 1.08999 * 110.62014 * 323.27775 * 17 15 13 28 28 H 1.09006 * 110.62165 * 86.27909 * 17 15 13 29 29 H 1.08998 * 109.46791 * 58.54677 * 21 19 18 30 30 H 1.08999 * 109.46925 * 178.54173 * 21 19 18 31 31 H 1.08996 * 109.47277 * 298.54669 * 21 19 18 32 32 H 1.09004 * 110.48518 * 243.34801 * 22 19 18 33 33 H 1.08995 * 110.48784 * 120.70099 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3787 -0.0983 5 6 3.4896 1.8944 -1.3177 6 1 3.2517 2.9195 -1.5607 7 6 4.1565 1.0983 -2.2409 8 7 4.7725 0.0075 -1.8441 9 14 4.1774 1.5788 -4.0459 10 1 3.4156 2.8400 -4.2313 11 1 5.5807 1.7780 -4.4889 12 1 3.5520 0.5001 -4.8526 13 6 3.2323 2.1393 1.0099 14 8 3.0133 1.6543 2.0998 15 6 3.6207 3.5910 0.8954 16 1 3.2453 4.0200 -0.0337 17 6 5.1574 3.7624 1.0026 18 8 5.3129 5.1188 1.4720 19 6 4.2861 5.3441 2.4525 20 1 4.6699 5.1234 3.4484 21 6 3.8117 6.7971 2.3847 22 6 3.1184 4.3954 2.1189 23 1 -1.0502 -0.0005 -0.0002 24 1 3.0096 -0.5750 -0.8511 25 1 3.0096 -0.4483 0.9243 26 1 5.2377 -0.5485 -2.4886 27 1 5.5730 3.0571 1.7222 28 1 5.6266 3.6378 0.0266 29 1 3.4360 7.0102 1.3839 30 1 3.0157 6.9537 3.1126 31 1 4.6454 7.4623 2.6091 32 1 2.2258 4.9652 1.8606 33 1 2.9171 3.7286 2.9573 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389585669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:10 Heat of formation + Delta-G solvation = -26.840991 kcal Electronic energy + Delta-G solvation = -17138.802333 eV Core-core repulsion = 14359.321457 eV Total energy + Delta-G solvation = -2779.480876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63681 -37.93544 -35.11765 -32.60323 -31.89661 -31.56262 -30.82861 -26.80900 -25.50880 -24.77493 -22.21651 -20.73398 -19.13519 -17.94578 -17.10594 -16.22067 -15.32225 -15.09113 -14.87316 -14.65101 -14.16036 -13.91982 -13.16319 -12.85578 -12.48769 -12.14387 -12.12070 -11.91949 -11.61578 -11.50478 -11.15925 -11.03828 -10.68415 -10.48008 -10.35719 -10.10678 -9.77916 -9.49561 -9.27993 -9.06570 -8.56151 -7.73554 -6.51823 -4.23032 3.05401 3.17243 3.20631 3.39943 3.65690 3.71541 4.06001 4.25071 4.77587 4.84734 5.06673 5.14560 5.29758 5.48516 5.60015 5.66578 5.78239 5.85655 6.06790 6.20391 6.23398 6.32111 6.40551 6.50398 6.60268 6.66695 6.72025 6.96750 7.31431 7.33583 7.76850 8.21140 8.39338 8.94258 9.32178 9.75733 10.52816 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.009356 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.064140 B = 2991.867105 C = 3836.353719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.154 4.154 3 C 0.211 3.789 4 N -0.434 5.434 5 C -0.343 4.343 6 H 0.092 0.908 7 C 0.046 3.954 8 N -0.861 5.861 9 Si 0.915 3.085 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.488 3.512 14 O -0.596 6.596 15 C -0.121 4.121 16 H 0.100 0.900 17 C 0.073 3.927 18 O -0.380 6.380 19 C 0.072 3.928 20 H 0.064 0.936 21 C -0.148 4.148 22 C -0.142 4.142 23 H 0.208 0.792 24 H 0.126 0.874 25 H 0.081 0.919 26 H 0.272 0.728 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 6.150 2.159 6.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.156 4.156 3 C 0.088 3.912 4 N -0.152 5.152 5 C -0.471 4.471 6 H 0.110 0.890 7 C -0.161 4.161 8 N -0.497 5.497 9 Si 0.741 3.259 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.277 3.723 14 O -0.481 6.481 15 C -0.142 4.142 16 H 0.119 0.881 17 C -0.004 4.004 18 O -0.299 6.299 19 C 0.015 3.985 20 H 0.081 0.919 21 C -0.205 4.205 22 C -0.180 4.180 23 H 0.225 0.775 24 H 0.144 0.856 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.792 5.890 2.524 6.654 hybrid contribution -0.403 -0.082 -1.043 1.121 sum -2.195 5.808 1.482 6.384 Atomic orbital electron populations 1.24608 0.95639 1.02189 1.05061 1.24409 0.95530 0.98599 0.97028 1.18450 0.81390 0.87047 1.04291 1.43315 1.55028 1.10561 1.06305 1.19464 1.37004 0.99404 0.91205 0.89013 1.25392 0.93781 0.96288 1.00593 1.69903 1.29367 1.15227 1.35168 0.86054 0.78251 0.79065 0.82491 1.19062 1.20467 1.20409 1.20115 0.80031 0.88160 0.83984 1.90521 1.55766 1.74522 1.27293 1.22524 0.97464 0.94507 0.99731 0.88149 1.23320 0.93859 0.82780 1.00431 1.88819 1.52510 1.30640 1.57981 1.22691 0.88021 0.95340 0.92486 0.91852 1.21916 1.00948 0.95226 1.02446 1.22994 0.97972 0.97818 0.99223 0.77531 0.85628 0.90056 0.91758 0.92184 0.87764 0.91959 0.91645 0.92337 0.90959 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.04 19.25 29.55 0.57 -4.48 16 2 C -0.15 -3.50 13.61 -37.12 -0.51 -4.00 16 3 C 0.21 5.09 5.38 -6.82 -0.04 5.05 16 4 N -0.43 -10.77 2.50 -117.93 -0.29 -11.07 16 5 C -0.34 -8.42 8.65 -14.93 -0.13 -8.55 16 6 H 0.09 2.17 6.46 -52.49 -0.34 1.83 16 7 C 0.05 1.11 4.94 -17.47 -0.09 1.03 16 8 N -0.86 -21.77 11.51 55.50 0.64 -21.13 16 9 Si 0.92 18.95 29.59 -169.99 -5.03 13.91 16 10 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 13 C 0.49 11.73 6.75 -10.98 -0.07 11.65 16 14 O -0.60 -15.52 15.30 5.55 0.08 -15.44 16 15 C -0.12 -2.44 2.77 -89.76 -0.25 -2.69 16 16 H 0.10 2.00 6.51 -51.93 -0.34 1.67 16 17 C 0.07 1.41 7.16 38.21 0.27 1.69 16 18 O -0.38 -6.93 11.19 -35.23 -0.39 -7.32 16 19 C 0.07 1.14 4.06 -26.15 -0.11 1.04 16 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 21 C -0.15 -1.87 9.36 37.16 0.35 -1.52 16 22 C -0.14 -2.47 6.17 -25.20 -0.16 -2.63 16 23 H 0.21 3.08 7.80 -54.08 -0.42 2.66 16 24 H 0.13 3.13 5.63 -51.93 -0.29 2.84 16 25 H 0.08 1.99 7.55 -51.93 -0.39 1.59 16 26 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 27 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 28 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.13 7.70 -51.93 -0.40 0.73 16 33 H 0.09 1.72 6.84 -51.93 -0.36 1.36 16 LS Contribution 285.05 15.07 4.30 4.30 Total: -1.00 -28.26 285.05 -5.06 -33.32 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.20 Total: 6.85 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -0.15 Total: -3.42 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.34 Total: -32.20 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.31 Total: -22.76 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.26 -5.06 -33.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389585669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.478 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds