Wall clock time and date at job start Sun Mar 29 2020 22:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46628 * 175.91776 * 3 2 1 5 5 C 1.37099 * 119.99827 * 263.44582 * 4 3 2 6 6 H 1.08002 * 120.00176 * 141.20493 * 5 4 3 7 7 C 1.38952 * 119.99978 * 321.20513 * 5 4 3 8 8 N 1.31411 * 119.99790 * 340.98475 * 7 5 4 9 9 Si 1.86802 * 120.00124 * 160.99255 * 7 5 4 10 10 H 1.48505 * 109.47025 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47254 * 119.99767 * 9 7 5 12 12 H 1.48503 * 109.46839 * 239.99759 * 9 7 5 13 13 C 1.34775 * 120.00159 * 83.44667 * 4 3 2 14 14 O 1.21291 * 120.00021 * 5.49827 * 13 4 3 15 15 C 1.50709 * 120.00032 * 185.22428 * 13 4 3 16 16 H 1.09002 * 110.80056 * 32.66784 * 15 13 4 17 17 C 1.54993 * 110.90427 * 269.04610 * 15 13 4 18 18 O 1.44377 * 103.48730 * 204.77745 * 17 15 13 19 19 C 1.43746 * 106.98019 * 40.06018 * 18 17 15 20 20 H 1.08993 * 109.87780 * 92.90560 * 19 18 17 21 21 C 1.52998 * 109.88217 * 214.06214 * 19 18 17 22 22 C 1.54108 * 107.28880 * 333.48930 * 19 18 17 23 23 H 4.40635 * 5.51396 * 179.97438 * 4 1 2 24 24 H 1.08994 * 109.47317 * 55.91848 * 3 2 1 25 25 H 1.08999 * 109.47397 * 295.91267 * 3 2 1 26 26 H 0.97001 * 120.00025 * 179.97438 * 8 7 5 27 27 H 1.08999 * 110.62014 * 323.27775 * 17 15 13 28 28 H 1.09006 * 110.62165 * 86.27909 * 17 15 13 29 29 H 1.08998 * 109.46791 * 58.54677 * 21 19 18 30 30 H 1.08999 * 109.46925 * 178.54173 * 21 19 18 31 31 H 1.08996 * 109.47277 * 298.54669 * 21 19 18 32 32 H 1.09004 * 110.48518 * 243.34801 * 22 19 18 33 33 H 1.08995 * 110.48784 * 120.70099 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3787 -0.0983 5 6 3.4896 1.8944 -1.3177 6 1 3.2517 2.9195 -1.5607 7 6 4.1565 1.0983 -2.2409 8 7 4.7725 0.0075 -1.8441 9 14 4.1774 1.5788 -4.0459 10 1 3.4156 2.8400 -4.2313 11 1 5.5807 1.7780 -4.4889 12 1 3.5520 0.5001 -4.8526 13 6 3.2323 2.1393 1.0099 14 8 3.0133 1.6543 2.0998 15 6 3.6207 3.5910 0.8954 16 1 3.2453 4.0200 -0.0337 17 6 5.1574 3.7624 1.0026 18 8 5.3129 5.1188 1.4720 19 6 4.2861 5.3441 2.4525 20 1 4.6699 5.1234 3.4484 21 6 3.8117 6.7971 2.3847 22 6 3.1184 4.3954 2.1189 23 1 -1.0502 -0.0005 -0.0002 24 1 3.0096 -0.5750 -0.8511 25 1 3.0096 -0.4483 0.9243 26 1 5.2377 -0.5485 -2.4886 27 1 5.5730 3.0571 1.7222 28 1 5.6266 3.6378 0.0266 29 1 3.4360 7.0102 1.3839 30 1 3.0157 6.9537 3.1126 31 1 4.6454 7.4623 2.6091 32 1 2.2258 4.9652 1.8606 33 1 2.9171 3.7286 2.9573 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389585669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:09 Heat of formation + Delta-G solvation = -43.659131 kcal Electronic energy + Delta-G solvation = -17139.531622 eV Core-core repulsion = 14359.321457 eV Total energy + Delta-G solvation = -2780.210165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28128 -39.59355 -37.00453 -34.34288 -33.44376 -33.17227 -32.33888 -28.56837 -26.96189 -26.54033 -23.83766 -22.07339 -20.94973 -19.62963 -18.79828 -17.96101 -16.88669 -16.80283 -16.41279 -16.27649 -15.81300 -15.63573 -14.78448 -14.26519 -14.19144 -13.95543 -13.48280 -13.27960 -13.26448 -12.88113 -12.82121 -12.81625 -12.16767 -12.06562 -11.74819 -11.62313 -11.47206 -11.27411 -10.86883 -10.68914 -10.44177 -9.65038 -8.37834 -6.15683 1.39989 1.48193 1.59777 1.69653 1.90620 1.97468 2.32967 2.77319 2.96507 3.17036 3.62753 3.70859 3.89144 4.05811 4.17629 4.24865 4.37315 4.50280 4.69290 4.73490 4.80988 4.86027 5.02554 5.03199 5.11757 5.12989 5.14549 5.33326 5.44688 5.90456 5.91500 6.31821 6.73715 7.05180 7.44395 7.88239 8.68058 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.009356 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.064140 B = 2991.867105 C = 3836.353719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.225 4.225 3 C 0.215 3.785 4 N -0.443 5.443 5 C -0.357 4.357 6 H 0.100 0.900 7 C 0.008 3.992 8 N -0.891 5.891 9 Si 0.981 3.019 10 H -0.257 1.257 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.477 3.523 14 O -0.626 6.626 15 C -0.119 4.119 16 H 0.104 0.896 17 C 0.081 3.919 18 O -0.385 6.385 19 C 0.068 3.932 20 H 0.071 0.929 21 C -0.142 4.142 22 C -0.135 4.135 23 H 0.258 0.742 24 H 0.112 0.888 25 H 0.061 0.939 26 H 0.275 0.725 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 7.847 1.469 8.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.227 4.227 3 C 0.092 3.908 4 N -0.160 5.160 5 C -0.484 4.484 6 H 0.117 0.883 7 C -0.196 4.196 8 N -0.528 5.528 9 Si 0.805 3.195 10 H -0.181 1.181 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.267 3.733 14 O -0.513 6.513 15 C -0.141 4.141 16 H 0.122 0.878 17 C 0.003 3.997 18 O -0.304 6.304 19 C 0.010 3.990 20 H 0.089 0.911 21 C -0.199 4.199 22 C -0.173 4.173 23 H 0.274 0.726 24 H 0.129 0.871 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.106 7.597 1.836 8.410 hybrid contribution -0.056 -0.663 -0.768 1.016 sum -3.162 6.934 1.068 7.696 Atomic orbital electron populations 1.25663 0.96437 0.98638 1.01291 1.24369 0.95930 1.01919 1.00445 1.18156 0.83167 0.86841 1.02592 1.43564 1.54947 1.10757 1.06777 1.19745 1.37392 0.99962 0.91327 0.88271 1.26201 0.93078 0.96087 1.04239 1.69998 1.29993 1.16249 1.36547 0.85055 0.78241 0.78900 0.77341 1.18074 1.20191 1.20463 1.20768 0.79534 0.89644 0.83397 1.90485 1.57117 1.75519 1.28207 1.22520 0.98085 0.92238 1.01228 0.87832 1.23124 0.93247 0.83382 0.99903 1.88816 1.53498 1.29447 1.58654 1.22925 0.86760 0.97121 0.92158 0.91133 1.21910 1.02037 0.92672 1.03274 1.22983 0.99543 0.97620 0.97201 0.72621 0.87098 0.92056 0.91499 0.93596 0.88153 0.91963 0.89275 0.91272 0.88799 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.46 19.25 74.32 1.43 -6.03 16 2 C -0.23 -10.24 13.61 31.13 0.42 -9.81 16 3 C 0.22 10.82 5.38 84.57 0.46 11.28 16 4 N -0.44 -22.56 2.50 -645.40 -1.61 -24.17 16 5 C -0.36 -17.67 8.65 84.04 0.73 -16.94 16 6 H 0.10 4.65 6.46 -2.91 -0.02 4.63 16 7 C 0.01 0.37 4.94 84.93 0.42 0.79 16 8 N -0.89 -46.06 11.51 21.66 0.25 -45.81 16 9 Si 0.98 38.45 29.59 68.60 2.03 40.48 16 10 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 11 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 12 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 13 C 0.48 23.44 6.75 87.66 0.59 24.03 16 14 O -0.63 -33.68 15.30 -3.06 -0.05 -33.73 16 15 C -0.12 -4.81 2.77 -10.24 -0.03 -4.84 16 16 H 0.10 4.07 6.51 -2.39 -0.02 4.06 16 17 C 0.08 3.15 7.16 72.66 0.52 3.67 16 18 O -0.38 -13.59 11.19 -148.98 -1.67 -15.26 16 19 C 0.07 2.02 4.06 30.97 0.13 2.14 16 20 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 21 C -0.14 -3.14 9.36 71.98 0.67 -2.47 16 22 C -0.14 -4.57 6.17 31.59 0.19 -4.38 16 23 H 0.26 6.36 7.80 -4.41 -0.03 6.32 16 24 H 0.11 5.80 5.63 -2.39 -0.01 5.78 16 25 H 0.06 3.20 7.55 -2.39 -0.02 3.19 16 26 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 27 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 28 H 0.10 3.94 8.14 -2.38 -0.02 3.92 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 2.72 7.70 -2.38 -0.02 2.71 16 33 H 0.07 2.76 6.84 -2.39 -0.02 2.74 16 Total: -1.00 -61.62 285.05 5.59 -56.03 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 1.10 Total: 25.01 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.53 Total: -2.57 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -1.36 Total: -69.98 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -1.71 Total: -48.99 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -61.62 5.59 -56.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389585669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.376 kcal (2) G-P(sol) polarization free energy of solvation -61.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds