Wall clock time and date at job start Sun Mar 29 2020 22:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47076 * 56.88142 * 3 2 1 5 5 C 1.37102 * 120.00301 * 89.99972 * 4 3 2 6 6 H 1.07992 * 119.99678 * 157.94481 * 5 4 3 7 7 C 1.38947 * 119.99856 * 337.94118 * 5 4 3 8 8 N 1.31417 * 120.00168 * 5.02716 * 7 5 4 9 9 Si 1.86797 * 120.00081 * 185.02054 * 7 5 4 10 10 H 1.48494 * 109.47141 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47003 * 300.00609 * 9 7 5 12 12 H 1.48500 * 109.47051 * 60.00027 * 9 7 5 13 13 C 1.34779 * 119.99874 * 269.99209 * 4 3 2 14 14 O 1.21302 * 119.99714 * 353.91528 * 13 4 3 15 15 C 1.50690 * 120.00180 * 173.90973 * 13 4 3 16 16 H 1.08999 * 110.43961 * 320.41272 * 15 13 4 17 17 C 1.54103 * 110.48579 * 82.95241 * 15 13 4 18 18 O 1.43749 * 107.29410 * 116.64585 * 17 15 13 19 19 C 1.44381 * 106.97258 * 26.51497 * 18 17 15 20 20 H 1.09002 * 110.62059 * 78.44167 * 19 18 17 21 21 C 1.53001 * 110.61786 * 201.43592 * 19 18 17 22 22 C 1.54811 * 110.49046 * 197.71765 * 15 13 4 23 23 H 4.40638 * 5.51440 * 180.02562 * 4 1 2 24 24 H 1.08994 * 109.46878 * 296.87643 * 3 2 1 25 25 H 1.09006 * 109.46498 * 176.87615 * 3 2 1 26 26 H 0.97001 * 120.00303 * 174.97902 * 8 7 5 27 27 H 1.09001 * 109.88347 * 236.06822 * 17 15 13 28 28 H 1.08993 * 109.88127 * 357.22428 * 17 15 13 29 29 H 1.08998 * 109.47186 * 58.55126 * 21 19 18 30 30 H 1.09004 * 109.47168 * 178.54456 * 21 19 18 31 31 H 1.08993 * 109.47265 * 298.54567 * 21 19 18 32 32 H 1.08997 * 110.90887 * 338.64661 * 22 15 13 33 33 H 1.09004 * 110.90299 * 102.24967 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7538 -1.1568 5 6 3.3629 -0.1124 -2.3469 6 1 4.0344 -0.5454 -3.0734 7 6 2.7301 1.0945 -2.6181 8 7 1.9912 1.6707 -1.6967 9 14 2.9299 1.8982 -4.2925 10 1 2.1607 3.1680 -4.3270 11 1 4.3667 2.1836 -4.5363 12 1 2.4217 0.9822 -5.3450 13 6 3.3600 -2.0784 -1.0511 14 8 3.2649 -2.6256 0.0272 15 6 3.7300 -2.8796 -2.2726 16 1 3.1530 -2.5466 -3.1353 17 6 5.2402 -2.7636 -2.5566 18 8 5.8031 -4.0791 -2.4190 19 6 4.7463 -5.0214 -2.7015 20 1 4.5883 -5.1102 -3.7764 21 6 5.0634 -6.3865 -2.0876 22 6 3.5067 -4.3902 -2.0180 23 1 -1.0499 0.0000 -0.0003 24 1 3.0095 -0.4637 0.9166 25 1 3.0088 1.0270 -0.0560 26 1 1.6091 2.5473 -1.8595 27 1 5.3997 -2.3964 -3.5704 28 1 5.7015 -2.0862 -1.8381 29 1 5.1910 -6.2797 -1.0104 30 1 4.2429 -7.0752 -2.2897 31 1 5.9819 -6.7773 -2.5254 32 1 3.4986 -4.6076 -0.9499 33 1 2.5858 -4.7322 -2.4902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389585670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:13 Heat of formation + Delta-G solvation = -16.964119 kcal Electronic energy + Delta-G solvation = -17230.647797 eV Core-core repulsion = 14451.595214 eV Total energy + Delta-G solvation = -2779.052583 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67871 -37.88045 -35.16013 -32.05897 -31.80727 -31.65927 -30.79467 -26.70064 -25.58664 -24.74103 -22.01308 -20.82836 -19.08309 -17.69623 -16.81181 -16.34433 -15.97751 -15.13684 -14.65641 -14.43954 -13.94254 -13.91113 -13.18563 -12.84813 -12.45190 -12.03495 -11.96191 -11.86693 -11.41665 -11.27298 -11.19607 -10.82679 -10.71906 -10.60028 -10.50402 -10.21711 -9.54965 -9.38577 -9.19760 -8.64881 -8.41842 -7.95250 -6.36961 -4.08028 3.05673 3.14067 3.15332 3.64196 3.88068 4.08841 4.21608 4.31433 4.82395 4.94922 5.07940 5.20698 5.37500 5.58040 5.65077 5.71697 5.74608 5.83188 5.97480 6.18235 6.22745 6.28543 6.35320 6.45829 6.67902 6.75464 7.06827 7.22697 7.25283 7.31796 7.64635 8.27308 8.95613 9.00491 9.37624 9.77294 10.56344 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025118 B = 0.008836 C = 0.007076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.467130 B = 3168.086765 C = 3956.278050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.085 4.085 3 C 0.236 3.764 4 N -0.440 5.440 5 C -0.339 4.339 6 H 0.099 0.901 7 C 0.039 3.961 8 N -0.862 5.862 9 Si 0.925 3.075 10 H -0.282 1.282 11 H -0.272 1.272 12 H -0.273 1.273 13 C 0.470 3.530 14 O -0.599 6.599 15 C -0.125 4.125 16 H 0.101 0.899 17 C 0.068 3.932 18 O -0.379 6.379 19 C 0.071 3.929 20 H 0.065 0.935 21 C -0.143 4.143 22 C -0.138 4.138 23 H 0.196 0.804 24 H 0.063 0.937 25 H 0.120 0.880 26 H 0.271 0.729 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -5.986 -3.443 7.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.087 4.087 3 C 0.114 3.886 4 N -0.158 5.158 5 C -0.467 4.467 6 H 0.117 0.883 7 C -0.166 4.166 8 N -0.499 5.499 9 Si 0.751 3.249 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.198 1.198 13 C 0.259 3.741 14 O -0.485 6.485 15 C -0.147 4.147 16 H 0.119 0.881 17 C -0.009 4.009 18 O -0.298 6.298 19 C 0.013 3.987 20 H 0.083 0.917 21 C -0.200 4.200 22 C -0.176 4.176 23 H 0.213 0.787 24 H 0.081 0.919 25 H 0.137 0.863 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.451 -6.093 -2.863 7.164 hybrid contribution -0.575 0.871 -1.159 1.560 sum 1.875 -5.221 -4.022 6.852 Atomic orbital electron populations 1.24160 0.95317 1.06422 1.05066 1.23191 0.94344 0.95188 0.95940 1.18276 0.84029 0.98535 0.87738 1.43637 1.56321 1.05135 1.10702 1.19601 1.26487 1.06035 0.94556 0.88328 1.25392 0.94498 0.97743 0.98994 1.69948 1.31403 1.15637 1.32946 0.86029 0.78504 0.78546 0.81833 1.20771 1.19751 1.19787 1.19876 0.82467 0.82281 0.89505 1.90521 1.58538 1.70432 1.28993 1.22392 0.97464 0.95472 0.99336 0.88105 1.22999 0.91908 0.84976 1.01036 1.88825 1.34116 1.15455 1.91425 1.23102 0.87073 0.90390 0.98113 0.91746 1.21743 1.01638 0.94747 1.01916 1.23168 0.97569 0.93228 1.03585 0.78698 0.91903 0.86283 0.91727 0.92075 0.89631 0.91665 0.91428 0.92278 0.88540 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.67 19.25 29.55 0.57 -6.10 16 2 C -0.08 -2.12 11.31 -37.12 -0.42 -2.54 16 3 C 0.24 5.82 5.22 -6.83 -0.04 5.79 16 4 N -0.44 -10.94 2.58 -117.94 -0.30 -11.25 16 5 C -0.34 -8.23 8.75 -14.93 -0.13 -8.36 16 6 H 0.10 2.22 6.05 -52.49 -0.32 1.90 16 7 C 0.04 0.95 5.38 -17.47 -0.09 0.85 16 8 N -0.86 -21.78 8.35 55.50 0.46 -21.31 16 9 Si 0.92 18.93 29.56 -169.99 -5.02 13.90 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 12 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 13 C 0.47 11.30 6.63 -10.99 -0.07 11.23 16 14 O -0.60 -15.79 15.06 5.54 0.08 -15.71 16 15 C -0.13 -2.48 2.47 -90.25 -0.22 -2.70 16 16 H 0.10 1.96 7.43 -51.93 -0.39 1.57 16 17 C 0.07 1.25 6.37 37.73 0.24 1.49 16 18 O -0.38 -6.88 11.22 -35.23 -0.40 -7.27 16 19 C 0.07 1.08 3.98 -25.68 -0.10 0.98 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.14 -1.82 9.66 37.16 0.36 -1.46 16 22 C -0.14 -2.40 6.06 -24.72 -0.15 -2.55 16 23 H 0.20 3.67 7.80 -54.10 -0.42 3.25 16 24 H 0.06 1.52 7.35 -51.93 -0.38 1.13 16 25 H 0.12 2.97 6.33 -51.93 -0.33 2.64 16 26 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 27 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 28 H 0.09 1.67 7.68 -51.93 -0.40 1.27 16 29 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.89 6.70 -51.93 -0.35 1.54 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 279.68 15.07 4.21 4.21 Total: -1.00 -28.83 279.68 -5.28 -34.10 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.25 Total: 6.69 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.06 Total: -3.37 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.16 Total: -32.56 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.31 Total: -22.98 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.83 -5.28 -34.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389585670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.138 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds