Wall clock time and date at job start Sun Mar 29 2020 22:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47076 * 56.88142 * 3 2 1 5 5 C 1.37102 * 120.00301 * 89.99972 * 4 3 2 6 6 H 1.07992 * 119.99678 * 157.94481 * 5 4 3 7 7 C 1.38947 * 119.99856 * 337.94118 * 5 4 3 8 8 N 1.31417 * 120.00168 * 5.02716 * 7 5 4 9 9 Si 1.86797 * 120.00081 * 185.02054 * 7 5 4 10 10 H 1.48494 * 109.47141 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47003 * 300.00609 * 9 7 5 12 12 H 1.48500 * 109.47051 * 60.00027 * 9 7 5 13 13 C 1.34779 * 119.99874 * 269.99209 * 4 3 2 14 14 O 1.21302 * 119.99714 * 353.91528 * 13 4 3 15 15 C 1.50690 * 120.00180 * 173.90973 * 13 4 3 16 16 H 1.08999 * 110.43961 * 320.41272 * 15 13 4 17 17 C 1.54103 * 110.48579 * 82.95241 * 15 13 4 18 18 O 1.43749 * 107.29410 * 116.64585 * 17 15 13 19 19 C 1.44381 * 106.97258 * 26.51497 * 18 17 15 20 20 H 1.09002 * 110.62059 * 78.44167 * 19 18 17 21 21 C 1.53001 * 110.61786 * 201.43592 * 19 18 17 22 22 C 1.54811 * 110.49046 * 197.71765 * 15 13 4 23 23 H 4.40638 * 5.51440 * 180.02562 * 4 1 2 24 24 H 1.08994 * 109.46878 * 296.87643 * 3 2 1 25 25 H 1.09006 * 109.46498 * 176.87615 * 3 2 1 26 26 H 0.97001 * 120.00303 * 174.97902 * 8 7 5 27 27 H 1.09001 * 109.88347 * 236.06822 * 17 15 13 28 28 H 1.08993 * 109.88127 * 357.22428 * 17 15 13 29 29 H 1.08998 * 109.47186 * 58.55126 * 21 19 18 30 30 H 1.09004 * 109.47168 * 178.54456 * 21 19 18 31 31 H 1.08993 * 109.47265 * 298.54567 * 21 19 18 32 32 H 1.08997 * 110.90887 * 338.64661 * 22 15 13 33 33 H 1.09004 * 110.90299 * 102.24967 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7538 -1.1568 5 6 3.3629 -0.1124 -2.3469 6 1 4.0344 -0.5454 -3.0734 7 6 2.7301 1.0945 -2.6181 8 7 1.9912 1.6707 -1.6967 9 14 2.9299 1.8982 -4.2925 10 1 2.1607 3.1680 -4.3270 11 1 4.3667 2.1836 -4.5363 12 1 2.4217 0.9822 -5.3450 13 6 3.3600 -2.0784 -1.0511 14 8 3.2649 -2.6256 0.0272 15 6 3.7300 -2.8796 -2.2726 16 1 3.1530 -2.5466 -3.1353 17 6 5.2402 -2.7636 -2.5566 18 8 5.8031 -4.0791 -2.4190 19 6 4.7463 -5.0214 -2.7015 20 1 4.5883 -5.1102 -3.7764 21 6 5.0634 -6.3865 -2.0876 22 6 3.5067 -4.3902 -2.0180 23 1 -1.0499 0.0000 -0.0003 24 1 3.0095 -0.4637 0.9166 25 1 3.0088 1.0270 -0.0560 26 1 1.6091 2.5473 -1.8595 27 1 5.3997 -2.3964 -3.5704 28 1 5.7015 -2.0862 -1.8381 29 1 5.1910 -6.2797 -1.0104 30 1 4.2429 -7.0752 -2.2897 31 1 5.9819 -6.7773 -2.5254 32 1 3.4986 -4.6076 -0.9499 33 1 2.5858 -4.7322 -2.4902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389585670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:12 Heat of formation + Delta-G solvation = -34.220414 kcal Electronic energy + Delta-G solvation = -17231.396086 eV Core-core repulsion = 14451.595214 eV Total energy + Delta-G solvation = -2779.800872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28917 -39.51506 -37.05958 -33.83389 -33.49938 -33.13186 -32.33436 -28.49277 -26.98116 -26.54227 -23.60580 -22.10044 -20.90259 -19.47549 -18.54221 -18.03405 -17.51382 -16.61251 -16.28202 -16.13954 -15.74215 -15.47814 -14.74581 -14.36318 -14.01786 -13.91034 -13.27469 -13.15710 -13.06972 -12.87607 -12.72191 -12.53605 -12.20876 -12.07221 -11.94790 -11.67072 -11.37115 -11.15976 -10.69811 -10.53220 -10.25395 -9.86204 -8.20838 -5.98644 1.43545 1.48258 1.57493 1.83605 2.07229 2.32623 2.43016 2.90513 3.10011 3.12244 3.64532 3.87716 3.97898 4.10023 4.14721 4.29250 4.48587 4.59181 4.65708 4.71046 4.86018 4.91556 5.00593 5.06018 5.12110 5.24235 5.33001 5.41268 5.43118 5.77371 5.97551 6.38857 7.08244 7.13310 7.50447 7.90323 8.72130 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025118 B = 0.008836 C = 0.007076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.467130 B = 3168.086765 C = 3956.278050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.133 4.133 3 C 0.238 3.762 4 N -0.449 5.449 5 C -0.355 4.355 6 H 0.115 0.885 7 C -0.003 4.003 8 N -0.886 5.886 9 Si 0.992 3.008 10 H -0.288 1.288 11 H -0.262 1.262 12 H -0.266 1.266 13 C 0.457 3.543 14 O -0.633 6.633 15 C -0.123 4.123 16 H 0.108 0.892 17 C 0.074 3.926 18 O -0.395 6.395 19 C 0.070 3.930 20 H 0.093 0.907 21 C -0.141 4.141 22 C -0.136 4.136 23 H 0.234 0.766 24 H 0.054 0.946 25 H 0.109 0.891 26 H 0.270 0.730 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.205 -6.706 -5.658 9.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.134 4.134 3 C 0.116 3.884 4 N -0.166 5.166 5 C -0.482 4.482 6 H 0.132 0.868 7 C -0.206 4.206 8 N -0.523 5.523 9 Si 0.815 3.185 10 H -0.213 1.213 11 H -0.187 1.187 12 H -0.191 1.191 13 C 0.247 3.753 14 O -0.522 6.522 15 C -0.145 4.145 16 H 0.126 0.874 17 C -0.003 4.003 18 O -0.315 6.315 19 C 0.014 3.986 20 H 0.110 0.890 21 C -0.198 4.198 22 C -0.174 4.174 23 H 0.251 0.749 24 H 0.072 0.928 25 H 0.127 0.873 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.244 -6.821 -5.081 8.796 hybrid contribution -0.556 1.096 -0.397 1.291 sum 1.688 -5.726 -5.477 8.101 Atomic orbital electron populations 1.25080 0.96307 1.04425 1.03108 1.23490 0.95062 0.97070 0.97819 1.18133 0.84656 0.97891 0.87767 1.43882 1.56145 1.05672 1.10932 1.20016 1.27123 1.06460 0.94593 0.86757 1.26240 0.94054 0.98097 1.02192 1.70098 1.31986 1.15687 1.34522 0.84999 0.78742 0.77193 0.77548 1.21325 1.18706 1.19087 1.20643 0.81859 0.82237 0.90529 1.90487 1.59960 1.71039 1.30668 1.22419 0.98589 0.96230 0.97243 0.87423 1.22919 0.90505 0.85182 1.01741 1.88813 1.35199 1.15653 1.91787 1.23367 0.85040 0.90608 0.99616 0.88972 1.21775 1.03429 0.93814 1.00758 1.23175 0.99924 0.91844 1.02433 0.74912 0.92797 0.87311 0.91991 0.89538 0.91743 0.93307 0.88857 0.90852 0.91257 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.17 19.25 74.32 1.43 -10.74 16 2 C -0.13 -6.70 11.31 31.12 0.35 -6.35 16 3 C 0.24 12.15 5.22 84.57 0.44 12.59 16 4 N -0.45 -22.73 2.58 -645.43 -1.67 -24.39 16 5 C -0.36 -17.12 8.75 84.04 0.74 -16.39 16 6 H 0.11 5.00 6.05 -2.91 -0.02 4.98 16 7 C 0.00 -0.15 5.38 84.92 0.46 0.30 16 8 N -0.89 -44.86 8.35 21.66 0.18 -44.68 16 9 Si 0.99 37.78 29.56 68.60 2.03 39.81 16 10 H -0.29 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 12 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 13 C 0.46 22.36 6.63 87.65 0.58 22.94 16 14 O -0.63 -34.51 15.06 -3.10 -0.05 -34.56 16 15 C -0.12 -4.79 2.47 -10.55 -0.03 -4.81 16 16 H 0.11 4.00 7.43 -2.39 -0.02 3.98 16 17 C 0.07 2.63 6.37 72.36 0.46 3.09 16 18 O -0.39 -13.71 11.22 -148.98 -1.67 -15.38 16 19 C 0.07 1.98 3.98 31.28 0.12 2.10 16 20 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 21 C -0.14 -3.22 9.66 71.98 0.70 -2.53 16 22 C -0.14 -4.56 6.06 31.89 0.19 -4.37 16 23 H 0.23 8.16 7.80 -4.42 -0.03 8.12 16 24 H 0.05 2.76 7.35 -2.39 -0.02 2.74 16 25 H 0.11 5.67 6.33 -2.38 -0.02 5.66 16 26 H 0.27 13.16 8.32 -92.71 -0.77 12.39 16 27 H 0.09 2.63 8.12 -2.39 -0.02 2.61 16 28 H 0.06 2.54 7.68 -2.39 -0.02 2.52 16 29 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 2.72 6.70 -2.39 -0.02 2.71 16 33 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 Total: -1.00 -62.21 279.68 5.36 -56.84 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 1.10 Total: 26.52 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 5.45 Total: -4.15 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.49 Total: -69.08 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -1.72 Total: -49.94 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -62.21 5.36 -56.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389585670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.621 kcal (2) G-P(sol) polarization free energy of solvation -62.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds