Wall clock time and date at job start Sun Mar 29 2020 22:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46947 * 158.75615 * 3 2 1 5 5 C 1.37100 * 119.99732 * 273.36648 * 4 3 2 6 6 H 1.08003 * 119.99813 * 184.52429 * 5 4 3 7 7 C 1.38949 * 120.00240 * 4.52605 * 5 4 3 8 8 N 1.31408 * 119.99678 * 27.06677 * 7 5 4 9 9 Si 1.86794 * 120.00163 * 207.06767 * 7 5 4 10 10 H 1.48500 * 109.47075 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47089 * 119.99556 * 9 7 5 12 12 H 1.48498 * 109.47129 * 240.00014 * 9 7 5 13 13 C 1.34780 * 119.99984 * 93.36619 * 4 3 2 14 14 O 1.21295 * 119.99489 * 180.02562 * 13 4 3 15 15 C 1.50695 * 120.00046 * 359.97438 * 13 4 3 16 16 H 1.09004 * 110.98657 * 62.74691 * 15 13 4 17 17 C 1.54941 * 111.12699 * 298.54549 * 15 13 4 18 18 O 1.43643 * 105.13746 * 205.59578 * 17 15 13 19 19 C 1.43241 * 109.97154 * 24.42583 * 18 17 15 20 20 H 1.08999 * 109.83119 * 238.77780 * 19 18 17 21 21 C 1.53000 * 109.82524 * 117.80380 * 19 18 17 22 22 C 1.54377 * 107.58519 * 358.29297 * 19 18 17 23 23 H 4.40643 * 5.51393 * 180.02562 * 4 1 2 24 24 H 1.08994 * 109.47215 * 38.75096 * 3 2 1 25 25 H 1.09003 * 109.46989 * 278.75160 * 3 2 1 26 26 H 0.97005 * 119.99969 * 180.02562 * 8 7 5 27 27 H 1.09007 * 110.30624 * 86.68057 * 17 15 13 28 28 H 1.08997 * 110.39305 * 324.55471 * 17 15 13 29 29 H 1.08992 * 109.47343 * 61.45630 * 21 19 18 30 30 H 1.09003 * 109.46737 * 181.45664 * 21 19 18 31 31 H 1.09001 * 109.47097 * 301.45191 * 21 19 18 32 32 H 1.08997 * 110.85256 * 96.83479 * 22 19 18 33 33 H 1.09004 * 110.84424 * 220.45180 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2882 -0.5005 5 6 3.2964 1.4828 -1.8478 6 1 3.7245 2.4049 -2.2124 7 6 2.9104 0.4938 -2.7442 8 7 1.9536 -0.3474 -2.4225 9 14 3.7518 0.3600 -4.4066 10 1 4.7883 1.4170 -4.5233 11 1 4.3904 -0.9747 -4.5322 12 1 2.7460 0.5311 -5.4856 13 6 3.4225 2.2815 0.3636 14 8 3.8259 3.3477 -0.0509 15 6 3.2432 2.0677 1.8445 16 1 3.9010 1.2779 2.2075 17 6 1.7634 1.7648 2.1899 18 8 1.6041 2.1815 3.5553 19 6 2.5813 3.1771 3.8802 20 1 3.1940 2.8355 4.7144 21 6 1.8837 4.4879 4.2491 22 6 3.4655 3.3875 2.6324 23 1 -1.0502 -0.0003 0.0003 24 1 3.0097 -0.8006 -0.6432 25 1 3.0094 -0.1555 1.0157 26 1 1.6844 -1.0382 -3.0481 27 1 1.5635 0.6975 2.0942 28 1 1.0978 2.3335 1.5406 29 1 1.2555 4.3311 5.1258 30 1 2.6327 5.2484 4.4700 31 1 1.2660 4.8183 3.4139 32 1 3.1237 4.2464 2.0549 33 1 4.5127 3.4997 2.9135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389585671.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:15 Heat of formation + Delta-G solvation = -29.795098 kcal Electronic energy + Delta-G solvation = -17388.529986 eV Core-core repulsion = 14608.921010 eV Total energy + Delta-G solvation = -2779.608976 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.37423 -39.54319 -37.20037 -34.25642 -33.24870 -33.09535 -32.34637 -28.36630 -27.18099 -26.61512 -23.89233 -21.99430 -20.56915 -19.76943 -18.47741 -18.24935 -17.50529 -16.99661 -16.21407 -15.92713 -15.83855 -15.10289 -14.77550 -14.68877 -14.08507 -13.85058 -13.63653 -13.46959 -13.32998 -12.85070 -12.75489 -12.43917 -12.16790 -12.08914 -11.96418 -11.71844 -11.21590 -11.04551 -10.63270 -10.52274 -10.30645 -9.95478 -8.37426 -5.88544 1.31711 1.42490 1.55304 1.81964 2.10500 2.32826 2.37467 2.75473 2.98543 3.23556 3.44202 3.82301 3.89693 3.93866 4.09418 4.17770 4.24615 4.44601 4.59567 4.71839 4.75457 4.80876 4.93594 4.99510 5.04617 5.19533 5.34879 5.42724 5.46569 5.97726 6.01524 6.40235 7.10603 7.16508 7.38751 7.93782 8.59380 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036319 B = 0.007973 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.762818 B = 3511.204967 C = 4062.373215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.143 4.143 3 C 0.228 3.772 4 N -0.446 5.446 5 C -0.360 4.360 6 H 0.076 0.924 7 C 0.010 3.990 8 N -0.860 5.860 9 Si 0.979 3.021 10 H -0.277 1.277 11 H -0.263 1.263 12 H -0.279 1.279 13 C 0.443 3.557 14 O -0.628 6.628 15 C -0.133 4.133 16 H 0.125 0.875 17 C 0.076 3.924 18 O -0.389 6.389 19 C 0.071 3.929 20 H 0.108 0.892 21 C -0.159 4.159 22 C -0.124 4.124 23 H 0.229 0.771 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.274 0.726 27 H 0.101 0.899 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -0.775 10.213 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.145 4.145 3 C 0.106 3.894 4 N -0.163 5.163 5 C -0.487 4.487 6 H 0.094 0.906 7 C -0.195 4.195 8 N -0.496 5.496 9 Si 0.803 3.197 10 H -0.202 1.202 11 H -0.188 1.188 12 H -0.205 1.205 13 C 0.233 3.767 14 O -0.516 6.516 15 C -0.154 4.154 16 H 0.143 0.857 17 C 0.000 4.000 18 O -0.309 6.309 19 C 0.015 3.985 20 H 0.126 0.874 21 C -0.216 4.216 22 C -0.162 4.162 23 H 0.246 0.754 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.118 -0.524 10.046 10.060 hybrid contribution 0.072 0.067 -1.536 1.539 sum 0.190 -0.457 8.510 8.524 Atomic orbital electron populations 1.25074 0.96305 1.00454 1.04768 1.23172 0.94694 0.99967 0.96653 1.18543 0.84922 0.87106 0.98833 1.43979 1.55151 1.11220 1.05942 1.19576 1.42619 1.04639 0.81874 0.90596 1.25867 0.95038 0.95845 1.02720 1.70246 1.22393 1.18739 1.38225 0.85122 0.78438 0.78548 0.77611 1.20217 1.18812 1.20518 1.20372 0.83972 0.83732 0.88610 1.90475 1.53335 1.27467 1.80295 1.22854 0.99158 1.01376 0.92037 0.85742 1.23386 0.93332 1.00663 0.82652 1.88384 1.56637 1.58375 1.27499 1.22996 0.89171 0.89323 0.97042 0.87444 1.22133 1.01484 0.96200 1.01793 1.23000 1.02162 0.96024 0.95029 0.75419 0.88600 0.88445 0.91533 0.88079 0.94806 0.90921 0.89564 0.94015 0.91881 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.78 19.22 74.32 1.43 -8.35 16 2 C -0.14 -6.17 8.36 31.12 0.26 -5.91 16 3 C 0.23 9.82 4.75 84.57 0.40 10.22 16 4 N -0.45 -22.53 2.59 -645.42 -1.67 -24.20 16 5 C -0.36 -20.19 9.42 84.04 0.79 -19.40 16 6 H 0.08 4.65 7.30 -2.91 -0.02 4.63 16 7 C 0.01 0.51 4.91 84.93 0.42 0.92 16 8 N -0.86 -43.46 9.06 21.66 0.20 -43.27 16 9 Si 0.98 41.42 29.63 68.60 2.03 43.45 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 12 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 13 C 0.44 21.57 7.03 87.66 0.62 22.19 16 14 O -0.63 -35.51 15.38 -3.07 -0.05 -35.55 16 15 C -0.13 -4.83 2.48 -10.09 -0.03 -4.85 16 16 H 0.12 3.81 7.59 -2.38 -0.02 3.79 16 17 C 0.08 2.73 5.45 72.65 0.40 3.13 16 18 O -0.39 -12.62 11.02 -148.98 -1.64 -14.27 16 19 C 0.07 1.91 4.16 31.06 0.13 2.04 16 20 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 21 C -0.16 -3.71 9.44 71.98 0.68 -3.03 16 22 C -0.12 -3.95 5.65 31.85 0.18 -3.77 16 23 H 0.23 7.17 7.80 -4.41 -0.03 7.13 16 24 H 0.10 4.38 6.33 -2.39 -0.02 4.36 16 25 H 0.10 3.41 5.68 -2.39 -0.01 3.39 16 26 H 0.27 13.04 8.31 -92.70 -0.77 12.27 16 27 H 0.10 3.47 5.16 -2.38 -0.01 3.46 16 28 H 0.03 1.40 7.98 -2.39 -0.02 1.38 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 2.34 7.19 -2.39 -0.02 2.33 16 33 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 Total: -1.00 -66.04 273.92 5.25 -60.80 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.10 Total: 19.85 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.27 Total: -6.81 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -1.48 Total: -67.47 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -1.69 Total: -49.82 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -66.04 5.25 -60.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389585671.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.002 kcal (2) G-P(sol) polarization free energy of solvation -66.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds