Wall clock time and date at job start Sun Mar 29 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48494 * 109.47135 * 274.79437 * 3 2 1 5 5 H 1.48501 * 109.47369 * 34.79744 * 3 2 1 6 6 H 1.48505 * 109.46983 * 154.79634 * 3 2 1 7 7 C 1.37873 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00173 * 4.87705 * 7 2 1 9 9 C 1.50699 * 119.99769 * 184.86735 * 7 2 1 10 10 C 1.53001 * 115.54763 * 84.78163 * 9 7 2 11 11 N 1.46501 * 109.47003 * 39.78509 * 10 9 7 12 12 C 1.38542 * 119.99593 * 185.09404 * 11 10 9 13 13 N 1.32458 * 119.18906 * 355.23037 * 12 11 10 14 14 C 1.32299 * 120.76062 * 180.24171 * 13 12 11 15 15 C 1.38772 * 119.17004 * 359.49017 * 14 13 12 16 16 F 1.35105 * 120.74650 * 180.22630 * 15 14 13 17 17 C 1.38788 * 118.51197 * 0.25124 * 15 14 13 18 18 N 1.32293 * 119.16616 * 0.02562 * 17 15 14 19 19 C 1.53008 * 117.51729 * 230.47759 * 9 7 2 20 20 C 1.52998 * 117.50261 * 299.10851 * 9 7 2 21 21 H 0.97001 * 119.99516 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47136 * 279.77949 * 10 9 7 23 23 H 1.09004 * 109.46764 * 159.78030 * 10 9 7 24 24 H 0.96999 * 120.00523 * 5.08897 * 11 10 9 25 25 H 1.08001 * 120.40990 * 179.76191 * 14 13 12 26 26 H 1.08000 * 120.41492 * 180.02562 * 17 15 14 27 27 H 1.09000 * 117.49627 * 214.97261 * 19 9 7 28 28 H 1.09003 * 117.49821 * 359.97438 * 19 9 7 29 29 H 1.09002 * 117.49458 * 359.97438 * 20 9 7 30 30 H 1.08991 * 117.50145 * 144.97165 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3953 2.1049 -1.3951 5 1 1.5010 2.6213 0.7990 6 1 3.5938 1.4130 0.5962 7 6 2.0045 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0786 9 6 3.5074 -1.1964 0.1113 10 6 4.0643 -1.1296 1.5348 11 7 3.2488 -1.9672 2.4179 12 6 3.4968 -1.9831 3.7808 13 7 4.5337 -1.3101 4.2567 14 6 4.8020 -1.3077 5.5522 15 6 3.9754 -2.0129 6.4154 16 9 4.2171 -2.0285 7.7445 17 6 2.8951 -2.7024 5.8827 18 7 2.6881 -2.6667 4.5765 19 6 4.2907 -2.0163 -0.9160 20 6 4.2981 -0.4881 -0.9905 21 1 -0.4849 0.8401 -0.0004 22 1 4.0391 -0.0984 1.8868 23 1 5.0929 -1.4903 1.5398 24 1 2.5354 -2.5106 2.0484 25 1 5.6512 -0.7602 5.9336 26 1 2.2317 -3.2609 6.5264 27 1 5.2027 -2.5081 -0.5777 28 1 3.7189 -2.5546 -1.6720 29 1 3.7313 -0.0208 -1.7958 30 1 5.2148 0.0258 -0.7013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389890713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:33 Heat of formation + Delta-G solvation = 39.292424 kcal Electronic energy + Delta-G solvation = -16262.616819 eV Core-core repulsion = 13394.836149 eV Total energy + Delta-G solvation = -2867.780670 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.67513 -40.59194 -37.51189 -34.58435 -33.56647 -32.21203 -29.97319 -26.39854 -25.41684 -24.49642 -22.57567 -21.72593 -19.37807 -18.01275 -17.55704 -17.17711 -16.29449 -15.82008 -15.15832 -14.70145 -14.40426 -14.25857 -13.93374 -13.25140 -13.05957 -12.88442 -12.62324 -12.29598 -11.48279 -11.18410 -10.90564 -10.78168 -10.57398 -10.28748 -9.90914 -9.60775 -9.20873 -8.89487 -8.67786 -8.57695 -7.49514 -6.22303 -4.27955 1.21088 1.23503 3.21806 3.31373 3.33821 3.38079 4.00641 4.19222 4.32508 4.34138 4.72069 4.83471 5.02968 5.06937 5.27298 5.63939 5.73448 5.91183 6.02939 6.18895 6.34322 6.39597 6.54048 6.63808 6.83812 7.01856 7.03831 7.45960 7.62514 7.96942 8.34209 8.63966 8.78237 9.40639 10.88417 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.030694 B = 0.006890 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.014497 B = 4062.830861 C = 4284.887011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.084 3.916 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.496 4.496 8 H 0.080 0.920 9 C -0.018 4.018 10 C 0.167 3.833 11 N -0.651 5.651 12 C 0.560 3.440 13 N -0.552 5.552 14 C 0.176 3.824 15 C -0.104 4.104 16 F -0.137 7.137 17 C 0.178 3.822 18 N -0.550 5.550 19 C -0.179 4.179 20 C -0.191 4.191 21 H 0.266 0.734 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.426 0.574 25 H 0.171 0.829 26 H 0.172 0.828 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.889 -2.626 8.673 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.120 4.120 3 Si 0.705 3.295 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.177 1.177 7 C -0.533 4.533 8 H 0.098 0.902 9 C -0.020 4.020 10 C 0.043 3.957 11 N -0.284 5.284 12 C 0.203 3.797 13 N -0.276 5.276 14 C 0.005 3.995 15 C -0.133 4.133 16 F -0.116 7.116 17 C 0.007 3.993 18 N -0.272 5.272 19 C -0.216 4.216 20 C -0.229 4.229 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.267 0.733 25 H 0.188 0.812 26 H 0.189 0.811 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.618 -2.377 7.442 11.631 hybrid contribution 0.250 0.842 0.983 1.318 sum 8.868 -1.535 8.424 12.327 Atomic orbital electron populations 1.69900 1.06419 1.27333 1.48861 1.24971 0.94540 0.99172 0.93339 0.86888 0.81025 0.83352 0.78279 1.20481 1.22116 1.17738 1.20149 0.86368 0.94677 1.52142 0.90239 1.19623 0.94974 1.00901 0.86456 1.21092 0.91473 0.93613 0.89515 1.44535 1.37209 1.46773 0.99853 1.19597 0.85452 0.86695 0.87954 1.68057 1.20470 1.24705 1.14329 1.23012 0.96590 0.92324 0.87565 1.19010 1.03649 1.11070 0.79613 1.91455 1.94371 1.95918 1.29867 1.23019 0.92854 0.92558 0.90904 1.68028 1.30421 1.24689 1.04074 1.22920 1.01244 0.93068 1.04354 1.22940 1.01561 0.94873 1.03492 0.92419 0.91927 0.93283 0.73273 0.81179 0.81057 0.90795 0.89406 0.89282 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 20.99 25.19 -169.99 -4.28 16.71 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.25 -5.71 5.23 56.52 0.30 -5.41 16 7 C -0.50 -12.81 8.09 -34.44 -0.28 -13.08 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C -0.02 -0.39 1.13 -155.66 -0.18 -0.57 16 10 C 0.17 3.38 5.55 -4.04 -0.02 3.35 16 11 N -0.65 -13.06 5.44 -62.29 -0.34 -13.40 16 12 C 0.56 10.56 8.42 -322.71 -2.72 7.85 16 13 N -0.55 -9.61 9.59 -13.87 -0.13 -9.74 16 14 C 0.18 2.46 11.29 -17.15 -0.19 2.27 16 15 C -0.10 -1.42 7.38 -39.18 -0.29 -1.71 16 16 F -0.14 -1.75 17.30 2.25 0.04 -1.71 16 17 C 0.18 2.52 11.29 -17.15 -0.19 2.33 16 18 N -0.55 -9.70 10.46 -13.86 -0.14 -9.85 16 19 C -0.18 -3.37 9.88 -26.72 -0.26 -3.64 16 20 C -0.19 -3.79 7.33 -26.73 -0.20 -3.99 16 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.06 1.35 6.66 -51.93 -0.35 1.01 16 23 H 0.05 0.91 7.95 -51.93 -0.41 0.50 16 24 H 0.43 8.90 7.67 -40.82 -0.31 8.58 16 25 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 28 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.09 1.85 7.13 -51.93 -0.37 1.48 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 263.47 15.07 3.97 3.97 Total: -1.00 -28.81 263.47 -7.76 -36.57 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.22 Total: 7.73 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -4.43 Total: -5.00 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.16 Total: -58.27 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.28 Total: 16.71 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.81 -7.76 -36.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389890713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.863 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds