Wall clock time and date at job start Sun Mar 29 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48494 * 109.47135 * 274.79437 * 3 2 1 5 5 H 1.48501 * 109.47369 * 34.79744 * 3 2 1 6 6 H 1.48505 * 109.46983 * 154.79634 * 3 2 1 7 7 C 1.37873 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00173 * 4.87705 * 7 2 1 9 9 C 1.50699 * 119.99769 * 184.86735 * 7 2 1 10 10 C 1.53001 * 115.54763 * 84.78163 * 9 7 2 11 11 N 1.46501 * 109.47003 * 39.78509 * 10 9 7 12 12 C 1.38542 * 119.99593 * 185.09404 * 11 10 9 13 13 N 1.32458 * 119.18906 * 355.23037 * 12 11 10 14 14 C 1.32299 * 120.76062 * 180.24171 * 13 12 11 15 15 C 1.38772 * 119.17004 * 359.49017 * 14 13 12 16 16 F 1.35105 * 120.74650 * 180.22630 * 15 14 13 17 17 C 1.38788 * 118.51197 * 0.25124 * 15 14 13 18 18 N 1.32293 * 119.16616 * 0.02562 * 17 15 14 19 19 C 1.53008 * 117.51729 * 230.47759 * 9 7 2 20 20 C 1.52998 * 117.50261 * 299.10851 * 9 7 2 21 21 H 0.97001 * 119.99516 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47136 * 279.77949 * 10 9 7 23 23 H 1.09004 * 109.46764 * 159.78030 * 10 9 7 24 24 H 0.96999 * 120.00523 * 5.08897 * 11 10 9 25 25 H 1.08001 * 120.40990 * 179.76191 * 14 13 12 26 26 H 1.08000 * 120.41492 * 180.02562 * 17 15 14 27 27 H 1.09000 * 117.49627 * 214.97261 * 19 9 7 28 28 H 1.09003 * 117.49821 * 359.97438 * 19 9 7 29 29 H 1.09002 * 117.49458 * 359.97438 * 20 9 7 30 30 H 1.08991 * 117.50145 * 144.97165 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3953 2.1049 -1.3951 5 1 1.5010 2.6213 0.7990 6 1 3.5938 1.4130 0.5962 7 6 2.0045 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0786 9 6 3.5074 -1.1964 0.1113 10 6 4.0643 -1.1296 1.5348 11 7 3.2488 -1.9672 2.4179 12 6 3.4968 -1.9831 3.7808 13 7 4.5337 -1.3101 4.2567 14 6 4.8020 -1.3077 5.5522 15 6 3.9754 -2.0129 6.4154 16 9 4.2171 -2.0285 7.7445 17 6 2.8951 -2.7024 5.8827 18 7 2.6881 -2.6667 4.5765 19 6 4.2907 -2.0163 -0.9160 20 6 4.2981 -0.4881 -0.9905 21 1 -0.4849 0.8401 -0.0004 22 1 4.0391 -0.0984 1.8868 23 1 5.0929 -1.4903 1.5398 24 1 2.5354 -2.5106 2.0484 25 1 5.6512 -0.7602 5.9336 26 1 2.2317 -3.2609 6.5264 27 1 5.2027 -2.5081 -0.5777 28 1 3.7189 -2.5546 -1.6720 29 1 3.7313 -0.0208 -1.7958 30 1 5.2148 0.0258 -0.7013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389890713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:33 Heat of formation + Delta-G solvation = 21.932618 kcal Electronic energy + Delta-G solvation = -16263.369597 eV Core-core repulsion = 13394.836149 eV Total energy + Delta-G solvation = -2868.533447 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.75982 -41.84094 -39.11473 -36.00369 -34.79721 -34.25779 -31.24974 -28.09414 -27.10253 -25.74508 -23.87621 -23.26263 -21.09861 -19.38084 -18.83247 -18.32792 -18.09040 -17.05150 -16.83862 -16.14296 -15.73135 -15.59050 -15.20365 -14.83906 -14.73795 -14.35548 -13.98989 -13.92080 -13.09055 -12.75589 -12.67047 -12.17223 -12.03386 -12.00616 -11.49374 -11.23562 -11.00432 -10.57924 -10.28540 -10.10835 -8.85041 -8.31226 -6.38270 0.02196 0.06602 1.32989 1.38302 1.48746 1.95390 2.35688 2.75767 3.04069 3.05201 3.15336 3.23953 3.70998 3.91760 3.99630 4.07651 4.35559 4.41678 4.64563 4.66639 4.82109 4.89080 5.09793 5.23050 5.38480 5.50291 5.67183 5.77311 6.09102 6.28831 6.55491 6.71746 7.27787 7.32790 8.83159 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.030694 B = 0.006890 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.014497 B = 4062.830861 C = 4284.887011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.028 3.972 3 Si 0.929 3.071 4 H -0.271 1.271 5 H -0.307 1.307 6 H -0.227 1.227 7 C -0.480 4.480 8 H 0.040 0.960 9 C -0.046 4.046 10 C 0.182 3.818 11 N -0.669 5.669 12 C 0.543 3.457 13 N -0.567 5.567 14 C 0.175 3.825 15 C -0.089 4.089 16 F -0.127 7.127 17 C 0.174 3.826 18 N -0.576 5.576 19 C -0.159 4.159 20 C -0.185 4.185 21 H 0.263 0.737 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.416 0.584 25 H 0.209 0.791 26 H 0.205 0.795 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.577 -2.319 9.940 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.171 4.171 3 Si 0.755 3.245 4 H -0.197 1.197 5 H -0.235 1.235 6 H -0.149 1.149 7 C -0.518 4.518 8 H 0.058 0.942 9 C -0.048 4.048 10 C 0.058 3.942 11 N -0.303 5.303 12 C 0.187 3.813 13 N -0.291 5.291 14 C 0.006 3.994 15 C -0.117 4.117 16 F -0.106 7.106 17 C 0.004 3.996 18 N -0.299 5.299 19 C -0.196 4.196 20 C -0.223 4.223 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.255 0.745 25 H 0.226 0.774 26 H 0.222 0.778 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.357 -2.083 8.760 14.493 hybrid contribution -0.586 0.615 0.737 1.125 sum 10.771 -1.468 9.497 14.435 Atomic orbital electron populations 1.70048 1.08279 1.27855 1.52041 1.25741 0.95044 1.02643 0.93640 0.86044 0.80888 0.79075 0.78510 1.19672 1.23488 1.14918 1.20282 0.88987 0.92786 1.49746 0.94202 1.19550 0.92581 1.04365 0.88267 1.20887 0.92328 0.92935 0.88053 1.44450 1.37566 1.47505 1.00732 1.19701 0.86350 0.87642 0.87654 1.68079 1.20201 1.24907 1.15946 1.23638 0.97365 0.91921 0.86483 1.18992 1.02947 1.09875 0.79921 1.91493 1.94225 1.95742 1.29139 1.23586 0.93480 0.92418 0.90087 1.68035 1.30958 1.25405 1.05512 1.22957 1.01457 0.92812 1.02340 1.23002 1.01851 0.95742 1.01697 0.92775 0.93523 0.91255 0.74484 0.77420 0.77804 0.87663 0.90129 0.90507 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 2 C 0.03 1.55 5.47 84.65 0.46 2.01 16 3 Si 0.93 43.28 25.19 68.60 1.73 45.01 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.31 -14.84 7.11 99.48 0.71 -14.14 16 6 H -0.23 -9.48 5.23 99.48 0.52 -8.96 16 7 C -0.48 -25.38 8.09 25.60 0.21 -25.17 16 8 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 9 C -0.05 -1.95 1.13 -52.93 -0.06 -2.01 16 10 C 0.18 7.07 5.55 86.38 0.48 7.55 16 11 N -0.67 -26.81 5.44 -350.98 -1.91 -28.72 16 12 C 0.54 20.06 8.42 261.45 2.20 22.26 16 13 N -0.57 -18.60 9.59 -197.78 -1.90 -20.50 16 14 C 0.18 4.36 11.29 84.75 0.96 5.32 16 15 C -0.09 -2.16 7.38 22.53 0.17 -1.99 16 16 F -0.13 -2.79 17.30 44.97 0.78 -2.01 16 17 C 0.17 4.55 11.29 84.75 0.96 5.50 16 18 N -0.58 -19.91 10.46 -197.77 -2.07 -21.97 16 19 C -0.16 -5.61 9.88 30.60 0.30 -5.30 16 20 C -0.19 -6.84 7.33 30.60 0.22 -6.61 16 21 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 22 H 0.05 1.93 6.66 -2.39 -0.02 1.91 16 23 H 0.07 2.37 7.95 -2.39 -0.02 2.36 16 24 H 0.42 17.95 7.67 -92.71 -0.71 17.23 16 25 H 0.21 3.42 8.06 -2.91 -0.02 3.40 16 26 H 0.21 3.74 8.06 -2.91 -0.02 3.72 16 27 H 0.11 3.09 8.08 -2.39 -0.02 3.07 16 28 H 0.08 2.95 8.14 -2.39 -0.02 2.94 16 29 H 0.08 3.03 7.13 -2.39 -0.02 3.02 16 30 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -63.81 263.47 3.10 -60.71 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.27 Total: 23.19 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 5.90 Total: 1.56 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -5.58 Total: -128.46 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.73 Total: 45.01 kcal Total: -63.81 3.10 -60.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389890713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.646 kcal (2) G-P(sol) polarization free energy of solvation -63.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds