Wall clock time and date at job start Sun Mar 29 2020 21:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46905 * 2 1 4 4 C 1.40002 * 119.99446 * 180.02562 * 3 2 1 5 5 C 1.38641 * 120.10374 * 359.97438 * 4 3 2 6 6 C 1.38284 * 120.00818 * 180.02562 * 5 4 3 7 7 C 1.38275 * 120.20418 * 359.97438 * 6 5 4 8 8 C 1.38247 * 120.19312 * 0.02562 * 7 6 5 9 9 C 1.38724 * 119.99820 * 0.02562 * 8 7 6 10 10 S 1.76201 * 120.10569 * 179.97438 * 9 8 7 11 11 C 1.81406 * 102.99596 * 359.97438 * 10 9 8 12 12 C 1.50701 * 109.47044 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99746 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00074 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99904 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99958 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47040 * 90.00279 * 16 14 12 18 18 H 1.48499 * 109.46766 * 209.99903 * 16 14 12 19 19 H 1.48497 * 109.46987 * 330.00016 * 16 14 12 20 20 H 1.08998 * 109.47460 * 60.00097 * 1 2 3 21 21 H 1.08999 * 109.47180 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46841 * 299.99885 * 1 2 3 23 23 H 1.08997 * 109.46987 * 239.99835 * 2 1 3 24 24 H 1.08993 * 109.47021 * 119.99750 * 2 1 3 25 25 H 0.97001 * 120.00315 * 359.97438 * 3 2 1 26 26 H 1.07997 * 119.99368 * 359.97438 * 5 4 3 27 27 H 1.08004 * 119.90252 * 180.02562 * 6 5 4 28 28 H 1.07996 * 119.90390 * 179.74422 * 7 6 5 29 29 H 1.08007 * 120.00109 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47274 * 300.00167 * 11 10 9 31 31 H 1.09004 * 109.46798 * 60.00268 * 11 10 9 32 32 H 0.96996 * 119.99847 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3948 1.6370 -0.0005 5 6 4.2976 0.5848 -0.0005 6 6 5.6567 0.8397 -0.0005 7 6 6.1202 2.1424 -0.0011 8 6 5.2274 3.1980 -0.0011 9 6 3.8622 2.9517 0.0000 10 16 2.7218 4.2949 0.0007 11 6 3.8053 5.7499 0.0004 12 6 2.9657 7.0014 0.0016 13 1 1.8881 6.9287 0.0020 14 6 3.5732 8.2391 0.0011 15 7 2.8404 9.3312 0.0027 16 14 5.4369 8.3647 -0.0017 17 1 5.9286 8.3986 -1.4025 18 1 5.8502 9.6075 0.6981 19 1 6.0134 7.1880 0.6970 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.3880 2.1185 -0.0004 26 1 3.9392 -0.4340 0.0003 27 1 6.3585 0.0187 -0.0010 28 1 7.1826 2.3359 0.0031 29 1 5.5928 4.2144 -0.0019 30 1 4.4348 5.7343 0.8901 31 1 4.4340 5.7345 -0.8899 32 1 3.2678 10.2019 0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393661984.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:17 Heat of formation + Delta-G solvation = 14.442591 kcal Electronic energy + Delta-G solvation = -14017.733053 eV Core-core repulsion = 11682.795238 eV Total energy + Delta-G solvation = -2334.937814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.04206 -35.86213 -33.13325 -31.43232 -30.79034 -29.29691 -27.71298 -23.71557 -22.82660 -21.92682 -20.90821 -17.70173 -16.79259 -16.26975 -15.87518 -15.07028 -14.60922 -14.27179 -13.81120 -13.57169 -13.25628 -13.23443 -12.61538 -12.48418 -12.36752 -11.84162 -11.64086 -11.59640 -10.96403 -10.86078 -10.38777 -10.19378 -9.89203 -9.71031 -9.18805 -9.14627 -8.74600 -7.55765 -6.41819 -6.23712 -4.27080 1.64324 1.89446 2.41995 3.18953 3.26266 3.27570 3.45533 3.71345 4.12375 4.26804 4.92411 5.00613 5.07810 5.13015 5.26575 5.31425 5.51817 5.65522 5.77089 5.82060 5.89639 6.01865 6.19684 6.44397 6.50785 6.60477 6.63620 6.88077 7.09562 7.34958 7.54608 7.91706 8.22610 8.76618 9.31573 10.88098 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.006766 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.206536 B = 4137.243687 C = 5070.701719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 N -0.746 5.746 4 C 0.225 3.775 5 C -0.188 4.188 6 C -0.092 4.092 7 C -0.161 4.161 8 C -0.092 4.092 9 C -0.145 4.145 10 S -0.141 6.141 11 C 0.035 3.965 12 C -0.519 4.519 13 H 0.084 0.916 14 C 0.083 3.917 15 N -0.889 5.889 16 Si 0.876 3.124 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.265 1.265 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.404 0.596 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 -17.867 0.005 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.001 4.001 3 N -0.379 5.379 4 C 0.117 3.883 5 C -0.213 4.213 6 C -0.114 4.114 7 C -0.182 4.182 8 C -0.118 4.118 9 C -0.262 4.262 10 S 0.104 5.896 11 C -0.113 4.113 12 C -0.558 4.558 13 H 0.102 0.898 14 C -0.122 4.122 15 N -0.526 5.526 16 Si 0.702 3.298 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.189 1.189 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.241 0.759 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.539 -17.762 0.009 17.770 hybrid contribution 2.155 0.530 -0.018 2.220 sum 2.694 -17.231 -0.009 17.441 Atomic orbital electron populations 1.21973 0.94738 1.02658 1.02912 1.21212 0.94413 0.83815 1.00681 1.44828 1.03369 1.07074 1.82597 1.17309 0.84139 0.91420 0.95409 1.20444 0.92865 0.97024 1.10922 1.20770 0.94575 0.96368 0.99638 1.20776 0.98895 0.92478 1.06080 1.21075 0.91484 0.99641 0.99559 1.21588 0.97516 0.95906 1.11201 1.85006 1.15133 0.97874 1.91623 1.21668 0.96795 0.93178 0.99672 1.20422 0.94948 0.87138 1.53263 0.89778 1.24826 0.98353 0.95141 0.93924 1.69857 1.35749 0.97829 1.49161 0.86828 0.85707 0.78257 0.78962 1.19723 1.20666 1.18914 0.91873 0.91148 0.91877 0.92636 0.92634 0.75885 0.86407 0.86629 0.86671 0.85854 0.94030 0.94499 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.03 37.16 0.37 -1.07 16 2 C 0.12 1.31 5.64 -4.04 -0.02 1.29 16 3 N -0.75 -10.80 5.68 -58.45 -0.33 -11.14 16 4 C 0.23 3.73 6.66 -83.49 -0.56 3.17 16 5 C -0.19 -2.69 9.31 -39.42 -0.37 -3.06 16 6 C -0.09 -1.26 10.04 -39.55 -0.40 -1.66 16 7 C -0.16 -2.45 10.04 -39.56 -0.40 -2.85 16 8 C -0.09 -1.68 9.36 -39.40 -0.37 -2.05 16 9 C -0.15 -2.76 6.12 -38.92 -0.24 -3.00 16 10 S -0.14 -3.02 20.37 -107.50 -2.19 -5.21 16 11 C 0.03 0.84 3.16 36.01 0.11 0.95 16 12 C -0.52 -14.67 9.68 -34.44 -0.33 -15.01 16 13 H 0.08 2.59 7.96 -52.48 -0.42 2.17 16 14 C 0.08 2.34 5.47 -17.82 -0.10 2.25 16 15 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 16 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.56 7.95 -51.93 -0.41 0.14 16 24 H 0.06 0.56 7.95 -51.93 -0.41 0.14 16 25 H 0.40 6.16 7.02 -40.82 -0.29 5.88 16 26 H 0.12 1.39 6.74 -52.49 -0.35 1.04 16 27 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.12 2.32 5.88 -52.48 -0.31 2.01 16 30 H 0.04 1.00 6.81 -51.92 -0.35 0.65 16 31 H 0.04 0.88 7.17 -51.92 -0.37 0.50 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 280.07 15.07 4.22 4.22 Total: -1.00 -30.03 280.07 -8.69 -38.72 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.20 Total: 4.10 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.29 Total: -21.04 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.44 Total: -36.99 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.19 Total: -5.21 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.03 -8.69 -38.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393661984.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.164 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds