Wall clock time and date at job start Sun Mar 29 2020 21:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46905 * 2 1 4 4 C 1.40002 * 119.99446 * 180.02562 * 3 2 1 5 5 C 1.38641 * 120.10374 * 359.97438 * 4 3 2 6 6 C 1.38284 * 120.00818 * 180.02562 * 5 4 3 7 7 C 1.38275 * 120.20418 * 359.97438 * 6 5 4 8 8 C 1.38247 * 120.19312 * 0.02562 * 7 6 5 9 9 C 1.38724 * 119.99820 * 0.02562 * 8 7 6 10 10 S 1.76201 * 120.10569 * 179.97438 * 9 8 7 11 11 C 1.81406 * 102.99596 * 359.97438 * 10 9 8 12 12 C 1.50701 * 109.47044 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99746 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00074 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99904 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99958 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47040 * 90.00279 * 16 14 12 18 18 H 1.48499 * 109.46766 * 209.99903 * 16 14 12 19 19 H 1.48497 * 109.46987 * 330.00016 * 16 14 12 20 20 H 1.08998 * 109.47460 * 60.00097 * 1 2 3 21 21 H 1.08999 * 109.47180 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46841 * 299.99885 * 1 2 3 23 23 H 1.08997 * 109.46987 * 239.99835 * 2 1 3 24 24 H 1.08993 * 109.47021 * 119.99750 * 2 1 3 25 25 H 0.97001 * 120.00315 * 359.97438 * 3 2 1 26 26 H 1.07997 * 119.99368 * 359.97438 * 5 4 3 27 27 H 1.08004 * 119.90252 * 180.02562 * 6 5 4 28 28 H 1.07996 * 119.90390 * 179.74422 * 7 6 5 29 29 H 1.08007 * 120.00109 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47274 * 300.00167 * 11 10 9 31 31 H 1.09004 * 109.46798 * 60.00268 * 11 10 9 32 32 H 0.96996 * 119.99847 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3948 1.6370 -0.0005 5 6 4.2976 0.5848 -0.0005 6 6 5.6567 0.8397 -0.0005 7 6 6.1202 2.1424 -0.0011 8 6 5.2274 3.1980 -0.0011 9 6 3.8622 2.9517 0.0000 10 16 2.7218 4.2949 0.0007 11 6 3.8053 5.7499 0.0004 12 6 2.9657 7.0014 0.0016 13 1 1.8881 6.9287 0.0020 14 6 3.5732 8.2391 0.0011 15 7 2.8404 9.3312 0.0027 16 14 5.4369 8.3647 -0.0017 17 1 5.9286 8.3986 -1.4025 18 1 5.8502 9.6075 0.6981 19 1 6.0134 7.1880 0.6970 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.3880 2.1185 -0.0004 26 1 3.9392 -0.4340 0.0003 27 1 6.3585 0.0187 -0.0010 28 1 7.1826 2.3359 0.0031 29 1 5.5928 4.2144 -0.0019 30 1 4.4348 5.7343 0.8901 31 1 4.4340 5.7345 -0.8899 32 1 3.2678 10.2019 0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393661984.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:17 Heat of formation + Delta-G solvation = -3.601947 kcal Electronic energy + Delta-G solvation = -14018.515523 eV Core-core repulsion = 11682.795238 eV Total energy + Delta-G solvation = -2335.720284 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21918 -36.90484 -35.27970 -32.41980 -32.18355 -31.19601 -28.78278 -25.07737 -24.43019 -23.17655 -22.04878 -19.37556 -18.53439 -17.52058 -17.12593 -16.34570 -15.93220 -15.78425 -15.10071 -14.92555 -14.91415 -14.68500 -14.34643 -13.99200 -13.17027 -12.96655 -12.74055 -12.69536 -12.49553 -12.33820 -12.16478 -11.92960 -11.63655 -10.98149 -10.94904 -10.89449 -10.46295 -8.83700 -8.42538 -7.88739 -6.53114 0.40517 0.69527 0.82384 1.31095 1.32545 1.43105 1.83324 2.25272 2.58482 2.90110 2.92088 3.95446 4.12672 4.23554 4.25584 4.47782 4.51538 4.55914 4.56216 4.64309 4.73305 4.92305 5.03764 5.06995 5.22152 5.24873 5.29959 5.47580 5.69818 5.97007 6.00549 6.45409 6.49949 6.71661 7.10055 8.73029 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.006766 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.206536 B = 4137.243687 C = 5070.701719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 N -0.752 5.752 4 C 0.218 3.782 5 C -0.186 4.186 6 C -0.076 4.076 7 C -0.166 4.166 8 C -0.111 4.111 9 C -0.177 4.177 10 S -0.165 6.165 11 C 0.042 3.958 12 C -0.534 4.534 13 H 0.041 0.959 14 C 0.026 3.974 15 N -0.935 5.935 16 Si 0.948 3.052 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.248 1.248 20 H 0.055 0.945 21 H 0.095 0.905 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.396 0.604 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.140 0.860 29 H 0.108 0.892 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 -20.927 -0.007 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.382 5.382 4 C 0.109 3.891 5 C -0.210 4.210 6 C -0.097 4.097 7 C -0.188 4.188 8 C -0.135 4.135 9 C -0.294 4.294 10 S 0.078 5.922 11 C -0.106 4.106 12 C -0.572 4.572 13 H 0.059 0.941 14 C -0.175 4.175 15 N -0.573 5.573 16 Si 0.770 3.230 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.172 1.172 20 H 0.074 0.926 21 H 0.114 0.886 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.231 0.769 26 H 0.167 0.833 27 H 0.175 0.825 28 H 0.158 0.842 29 H 0.126 0.874 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.767 -20.869 -0.003 21.052 hybrid contribution 1.384 1.310 -0.015 1.906 sum 4.151 -19.559 -0.018 19.995 Atomic orbital electron populations 1.21964 0.93569 1.04091 1.02248 1.21474 0.95485 0.81824 1.01702 1.45113 1.02676 1.08480 1.81967 1.17592 0.85450 0.90998 0.95025 1.20858 0.92876 0.97733 1.09568 1.21279 0.95070 0.96845 0.96470 1.21085 0.99715 0.92399 1.05551 1.21145 0.91729 1.00025 1.00623 1.21537 0.97216 0.95458 1.15140 1.84871 1.16067 0.98377 1.92863 1.21373 0.96591 0.92988 0.99626 1.20604 0.93577 0.89534 1.53508 0.94097 1.25818 1.04194 0.94448 0.93072 1.69999 1.38341 0.98661 1.50334 0.85698 0.78596 0.78993 0.79760 1.18474 1.19796 1.17166 0.92558 0.88602 0.92566 0.91429 0.91432 0.76890 0.83299 0.82502 0.84203 0.87393 0.93955 0.94109 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.03 71.98 0.72 -1.80 16 2 C 0.12 2.21 5.64 86.38 0.49 2.70 16 3 N -0.75 -20.92 5.68 -338.82 -1.93 -22.85 16 4 C 0.22 6.87 6.66 38.25 0.25 7.12 16 5 C -0.19 -4.61 9.31 22.38 0.21 -4.40 16 6 C -0.08 -1.74 10.04 22.29 0.22 -1.51 16 7 C -0.17 -4.55 10.04 22.28 0.22 -4.32 16 8 C -0.11 -3.92 9.36 22.39 0.21 -3.71 16 9 C -0.18 -6.67 6.12 22.70 0.14 -6.53 16 10 S -0.16 -7.30 20.37 -56.49 -1.15 -8.45 16 11 C 0.04 2.11 3.16 71.24 0.23 2.33 16 12 C -0.53 -31.57 9.68 25.60 0.25 -31.32 16 13 H 0.04 2.69 7.96 -2.91 -0.02 2.67 16 14 C 0.03 1.48 5.47 84.65 0.46 1.95 16 15 N -0.93 -57.89 13.96 21.45 0.30 -57.59 16 16 Si 0.95 43.29 27.47 68.60 1.88 45.18 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 20 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 22 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 23 H 0.07 1.13 7.95 -2.39 -0.02 1.11 16 24 H 0.07 1.13 7.95 -2.39 -0.02 1.11 16 25 H 0.40 12.17 7.02 -92.71 -0.65 11.52 16 26 H 0.15 2.74 6.74 -2.91 -0.02 2.72 16 27 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 29 H 0.11 4.04 5.88 -2.91 -0.02 4.03 16 30 H 0.04 2.07 6.81 -2.39 -0.02 2.05 16 31 H 0.04 1.97 7.17 -2.39 -0.02 1.95 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -67.75 280.07 2.92 -64.83 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.41 Total: 18.37 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 3.40 Total: -39.49 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -1.63 Total: -80.44 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.18 kcal Atomic # 16 Polarization: -7.30 SS G_CDS: -1.15 Total: -8.45 kcal Total: -67.75 2.92 -64.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393661984.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.229 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds