Wall clock time and date at job start Sun Mar 29 2020 22:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47357 * 297.66396 * 3 2 1 5 5 C 1.37098 * 120.00133 * 95.84009 * 4 3 2 6 6 H 1.07998 * 119.99964 * 162.55600 * 5 4 3 7 7 C 1.38954 * 119.99551 * 342.55274 * 5 4 3 8 8 N 1.31410 * 120.00486 * 337.01411 * 7 5 4 9 9 Si 1.86808 * 119.99505 * 157.01286 * 7 5 4 10 10 H 1.48499 * 109.46979 * 60.00083 * 9 7 5 11 11 H 1.48498 * 109.47024 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47308 * 300.00087 * 9 7 5 13 13 C 1.34775 * 120.00017 * 276.12006 * 4 3 2 14 14 O 1.21293 * 120.00509 * 179.72427 * 13 4 3 15 15 C 1.50702 * 120.00004 * 359.71980 * 13 4 3 16 16 C 1.53000 * 109.47150 * 180.02562 * 15 13 4 17 17 H 1.08997 * 110.43398 * 303.90506 * 16 15 13 18 18 C 1.54820 * 110.48905 * 181.22109 * 16 15 13 19 19 C 1.54989 * 102.09253 * 220.44237 * 18 16 15 20 20 O 1.44379 * 103.49094 * 37.02127 * 19 18 16 21 21 C 1.43739 * 106.97930 * 319.93841 * 20 19 18 22 22 H 4.40643 * 5.51316 * 179.97438 * 4 1 2 23 23 H 1.09006 * 109.46688 * 177.66375 * 3 2 1 24 24 H 1.09002 * 109.46833 * 57.66848 * 3 2 1 25 25 H 0.96996 * 119.99675 * 179.97438 * 8 7 5 26 26 H 1.09005 * 109.47322 * 300.00510 * 15 13 4 27 27 H 1.09005 * 109.47227 * 60.00267 * 15 13 4 28 28 H 1.09005 * 110.90283 * 338.64114 * 18 16 15 29 29 H 1.08998 * 110.90387 * 102.23826 * 18 16 15 30 30 H 1.08998 * 110.61715 * 278.52054 * 19 18 16 31 31 H 1.08995 * 110.75296 * 155.58840 * 19 18 16 32 32 H 1.08996 * 109.88370 * 267.09128 * 21 20 19 33 33 H 1.09000 * 110.00833 * 146.00385 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1347 -0.6404 1.2233 5 6 3.4777 -1.9677 1.2116 6 1 4.0906 -2.3740 2.0027 7 6 3.0368 -2.7901 0.1821 8 7 1.9683 -2.4624 -0.5090 9 14 3.9632 -4.3618 -0.2196 10 1 3.9710 -5.2497 0.9707 11 1 3.2946 -5.0555 -1.3496 12 1 5.3601 -4.0299 -0.5987 13 6 3.2417 0.0733 2.3615 14 8 3.6416 -0.4586 3.3756 15 6 2.8647 1.5323 2.3744 16 6 3.0783 2.1020 3.7782 17 1 2.5149 1.5261 4.5124 18 6 2.6686 3.5942 3.8257 19 6 3.7848 4.2095 4.7075 20 8 4.9673 3.4829 4.3097 21 6 4.5776 2.1105 4.1345 22 1 -1.0499 0.0001 0.0002 23 1 3.0089 1.0277 -0.0419 24 1 3.0096 -0.5488 -0.8684 25 1 1.6608 -3.0364 -1.2279 26 1 3.4881 2.0750 1.6636 27 1 1.8167 1.6393 2.0941 28 1 2.6762 4.0315 2.8272 29 1 1.6919 3.7147 4.2941 30 1 3.5722 4.0476 5.7642 31 1 3.8996 5.2731 4.4989 32 1 4.7418 1.5575 5.0594 33 1 5.1531 1.6596 3.3261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401366742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:30 Heat of formation + Delta-G solvation = -19.161419 kcal Electronic energy + Delta-G solvation = -17009.394050 eV Core-core repulsion = 14230.246186 eV Total energy + Delta-G solvation = -2779.147865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.51217 -38.22271 -35.22973 -33.05055 -32.05178 -31.22294 -29.60128 -27.00196 -26.24081 -24.23743 -22.45304 -20.52040 -18.77558 -17.86758 -16.61736 -16.43373 -16.10682 -15.49206 -14.69000 -14.54697 -14.36631 -14.06658 -13.21890 -12.98214 -12.41492 -12.25445 -12.03291 -11.79723 -11.57221 -11.31444 -11.06280 -10.89921 -10.58209 -10.54053 -10.40265 -10.25218 -9.42797 -9.33824 -9.25135 -8.92008 -8.39746 -7.87257 -6.34749 -3.85869 3.16830 3.24646 3.28161 3.65803 3.91095 4.02375 4.17126 4.20705 4.70216 4.89421 5.02153 5.14021 5.17301 5.42186 5.44518 5.51129 5.71119 5.79398 5.87633 5.97471 6.03459 6.10706 6.29188 6.33268 6.40002 6.54484 6.71354 6.99819 7.15613 7.55898 8.04858 8.41745 8.77968 9.13055 9.35694 9.90901 10.66337 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.007079 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.142361 B = 3954.188526 C = 4579.566698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.114 4.114 3 C 0.231 3.769 4 N -0.441 5.441 5 C -0.318 4.318 6 H 0.104 0.896 7 C 0.032 3.968 8 N -0.861 5.861 9 Si 0.919 3.081 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.449 3.551 14 O -0.583 6.583 15 C -0.125 4.125 16 C -0.099 4.099 17 H 0.087 0.913 18 C -0.153 4.153 19 C 0.047 3.953 20 O -0.388 6.388 21 C 0.063 3.937 22 H 0.199 0.801 23 H 0.063 0.937 24 H 0.108 0.892 25 H 0.268 0.732 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 10.128 1.866 10.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.115 4.115 3 C 0.108 3.892 4 N -0.159 5.159 5 C -0.445 4.445 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.499 5.499 9 Si 0.746 3.254 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.238 3.762 14 O -0.468 6.468 15 C -0.165 4.165 16 C -0.118 4.118 17 H 0.105 0.895 18 C -0.191 4.191 19 C -0.030 4.030 20 O -0.307 6.307 21 C -0.014 4.014 22 H 0.216 0.784 23 H 0.081 0.919 24 H 0.126 0.874 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.206 9.831 2.161 10.068 hybrid contribution -0.384 -1.095 -0.440 1.241 sum -0.591 8.736 1.721 8.924 Atomic orbital electron populations 1.24272 0.95376 1.05887 1.02410 1.23196 0.94374 0.95635 0.98328 1.18248 0.84258 0.95718 0.91001 1.43724 1.55925 1.09751 1.06489 1.19609 1.30343 0.83851 1.10730 0.87850 1.25276 0.95092 0.99275 0.97590 1.70098 1.18803 1.39051 1.21904 0.86109 0.79762 0.81390 0.78150 1.19877 1.21067 1.19881 1.20081 0.84291 0.88359 0.83506 1.90515 1.51287 1.72630 1.32336 1.21661 1.02661 0.95326 0.96838 1.22215 0.96886 0.94884 0.97832 0.89479 1.23236 0.99189 0.95577 1.01095 1.23475 0.85052 0.96712 0.97752 1.88831 1.31771 1.20774 1.89348 1.23167 0.94606 0.81950 1.01645 0.78391 0.91904 0.87434 0.92109 0.90256 0.89939 0.90434 0.90442 0.92602 0.89505 0.92156 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.32 19.25 29.55 0.57 -4.75 16 2 C -0.11 -2.51 10.85 -37.12 -0.40 -2.91 16 3 C 0.23 5.03 4.91 -6.83 -0.03 5.00 16 4 N -0.44 -10.97 2.60 -117.93 -0.31 -11.27 16 5 C -0.32 -8.69 9.31 -14.93 -0.14 -8.83 16 6 H 0.10 2.97 7.40 -52.49 -0.39 2.59 16 7 C 0.03 0.83 4.82 -17.47 -0.08 0.75 16 8 N -0.86 -22.51 9.58 55.50 0.53 -21.98 16 9 Si 0.92 20.38 29.61 -169.99 -5.03 15.35 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.45 10.59 7.07 -10.99 -0.08 10.51 16 14 O -0.58 -15.48 14.73 5.55 0.08 -15.40 16 15 C -0.12 -2.25 3.54 -27.88 -0.10 -2.35 16 16 C -0.10 -1.62 2.67 -89.08 -0.24 -1.86 16 17 H 0.09 1.52 8.02 -51.93 -0.42 1.10 16 18 C -0.15 -1.93 6.71 -24.72 -0.17 -2.09 16 19 C 0.05 0.58 7.72 38.21 0.29 0.88 16 20 O -0.39 -6.30 11.52 -35.23 -0.41 -6.71 16 21 C 0.06 1.08 6.31 37.73 0.24 1.32 16 22 H 0.20 3.29 7.80 -54.10 -0.42 2.86 16 23 H 0.06 1.13 6.70 -51.93 -0.35 0.79 16 24 H 0.11 2.47 6.49 -51.93 -0.34 2.13 16 25 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 27 H 0.08 1.44 7.49 -51.93 -0.39 1.06 16 28 H 0.08 0.92 7.87 -51.93 -0.41 0.51 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.62 7.25 -51.93 -0.38 1.24 16 LS Contribution 279.83 15.07 4.22 4.22 Total: -1.00 -30.60 279.83 -5.35 -35.95 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.30 Total: 4.18 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -0.14 Total: -4.33 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.22 Total: -33.26 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.32 Total: -22.10 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.60 -5.35 -35.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401366742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.788 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds