Wall clock time and date at job start Sun Mar 29 2020 22:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47357 * 297.66396 * 3 2 1 5 5 C 1.37098 * 120.00133 * 95.84009 * 4 3 2 6 6 H 1.07998 * 119.99964 * 162.55600 * 5 4 3 7 7 C 1.38954 * 119.99551 * 342.55274 * 5 4 3 8 8 N 1.31410 * 120.00486 * 337.01411 * 7 5 4 9 9 Si 1.86808 * 119.99505 * 157.01286 * 7 5 4 10 10 H 1.48499 * 109.46979 * 60.00083 * 9 7 5 11 11 H 1.48498 * 109.47024 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47308 * 300.00087 * 9 7 5 13 13 C 1.34775 * 120.00017 * 276.12006 * 4 3 2 14 14 O 1.21293 * 120.00509 * 179.72427 * 13 4 3 15 15 C 1.50702 * 120.00004 * 359.71980 * 13 4 3 16 16 C 1.53000 * 109.47150 * 180.02562 * 15 13 4 17 17 H 1.08997 * 110.43398 * 303.90506 * 16 15 13 18 18 C 1.54820 * 110.48905 * 181.22109 * 16 15 13 19 19 C 1.54989 * 102.09253 * 220.44237 * 18 16 15 20 20 O 1.44379 * 103.49094 * 37.02127 * 19 18 16 21 21 C 1.43739 * 106.97930 * 319.93841 * 20 19 18 22 22 H 4.40643 * 5.51316 * 179.97438 * 4 1 2 23 23 H 1.09006 * 109.46688 * 177.66375 * 3 2 1 24 24 H 1.09002 * 109.46833 * 57.66848 * 3 2 1 25 25 H 0.96996 * 119.99675 * 179.97438 * 8 7 5 26 26 H 1.09005 * 109.47322 * 300.00510 * 15 13 4 27 27 H 1.09005 * 109.47227 * 60.00267 * 15 13 4 28 28 H 1.09005 * 110.90283 * 338.64114 * 18 16 15 29 29 H 1.08998 * 110.90387 * 102.23826 * 18 16 15 30 30 H 1.08998 * 110.61715 * 278.52054 * 19 18 16 31 31 H 1.08995 * 110.75296 * 155.58840 * 19 18 16 32 32 H 1.08996 * 109.88370 * 267.09128 * 21 20 19 33 33 H 1.09000 * 110.00833 * 146.00385 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1347 -0.6404 1.2233 5 6 3.4777 -1.9677 1.2116 6 1 4.0906 -2.3740 2.0027 7 6 3.0368 -2.7901 0.1821 8 7 1.9683 -2.4624 -0.5090 9 14 3.9632 -4.3618 -0.2196 10 1 3.9710 -5.2497 0.9707 11 1 3.2946 -5.0555 -1.3496 12 1 5.3601 -4.0299 -0.5987 13 6 3.2417 0.0733 2.3615 14 8 3.6416 -0.4586 3.3756 15 6 2.8647 1.5323 2.3744 16 6 3.0783 2.1020 3.7782 17 1 2.5149 1.5261 4.5124 18 6 2.6686 3.5942 3.8257 19 6 3.7848 4.2095 4.7075 20 8 4.9673 3.4829 4.3097 21 6 4.5776 2.1105 4.1345 22 1 -1.0499 0.0001 0.0002 23 1 3.0089 1.0277 -0.0419 24 1 3.0096 -0.5488 -0.8684 25 1 1.6608 -3.0364 -1.2279 26 1 3.4881 2.0750 1.6636 27 1 1.8167 1.6393 2.0941 28 1 2.6762 4.0315 2.8272 29 1 1.6919 3.7147 4.2941 30 1 3.5722 4.0476 5.7642 31 1 3.8996 5.2731 4.4989 32 1 4.7418 1.5575 5.0594 33 1 5.1531 1.6596 3.3261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401366742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:29 Heat of formation + Delta-G solvation = -38.582082 kcal Electronic energy + Delta-G solvation = -17010.236193 eV Core-core repulsion = 14230.246186 eV Total energy + Delta-G solvation = -2779.990008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99436 -39.77706 -37.08582 -34.51187 -33.82522 -33.00933 -30.77553 -28.63397 -27.88490 -26.05953 -23.58919 -21.89555 -20.43211 -19.66006 -18.37282 -17.94711 -17.54725 -16.81970 -16.43642 -16.04893 -15.96176 -15.69275 -14.70622 -14.54583 -14.01028 -13.68504 -13.60439 -13.54985 -13.18740 -12.81721 -12.50484 -12.44807 -12.19828 -12.02849 -11.84174 -11.57614 -11.14595 -11.08244 -10.65630 -10.59409 -10.25785 -9.81651 -8.32334 -5.91105 1.37464 1.42427 1.51715 1.91220 2.16208 2.33214 2.38903 3.04013 3.06324 3.18877 3.62383 3.82655 3.89549 3.95674 4.17213 4.31868 4.42261 4.43708 4.67732 4.73571 4.82042 4.87703 4.93618 4.96511 5.01411 5.13619 5.26531 5.43394 5.48117 5.97204 6.07545 6.45850 7.14776 7.16807 7.44872 8.01837 8.66273 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.007079 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.142361 B = 3954.188526 C = 4579.566698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.155 4.155 3 C 0.233 3.767 4 N -0.455 5.455 5 C -0.355 4.355 6 H 0.074 0.926 7 C 0.004 3.996 8 N -0.870 5.870 9 Si 0.980 3.020 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.268 1.268 13 C 0.438 3.562 14 O -0.624 6.624 15 C -0.110 4.110 16 C -0.100 4.100 17 H 0.070 0.930 18 C -0.141 4.141 19 C 0.040 3.960 20 O -0.403 6.403 21 C 0.068 3.932 22 H 0.233 0.767 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.272 0.728 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 11.634 1.187 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.157 4.157 3 C 0.111 3.889 4 N -0.173 5.173 5 C -0.483 4.483 6 H 0.092 0.908 7 C -0.199 4.199 8 N -0.507 5.507 9 Si 0.804 3.196 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.193 1.193 13 C 0.228 3.772 14 O -0.511 6.511 15 C -0.150 4.150 16 C -0.120 4.120 17 H 0.089 0.911 18 C -0.179 4.179 19 C -0.035 4.035 20 O -0.323 6.323 21 C -0.009 4.009 22 H 0.249 0.751 23 H 0.117 0.883 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.064 0.936 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.307 11.365 1.460 11.532 hybrid contribution -0.091 -1.545 -0.198 1.560 sum -1.398 9.820 1.262 9.999 Atomic orbital electron populations 1.25140 0.96340 1.04193 1.00561 1.23445 0.94978 0.97229 1.00005 1.18299 0.84666 0.97013 0.88964 1.43940 1.56144 1.09258 1.07944 1.19504 1.31738 0.85749 1.11278 0.90838 1.25925 0.95426 1.01795 0.96798 1.70181 1.18976 1.39857 1.21690 0.85209 0.78869 0.77788 0.77722 1.20621 1.19763 1.19269 1.21081 0.82949 0.90521 0.82600 1.90478 1.52808 1.74084 1.33766 1.21603 1.03471 0.91318 0.98598 1.22199 0.96014 0.97519 0.96222 0.91100 1.23224 1.00298 0.92065 1.02266 1.23785 0.83559 0.97810 0.98386 1.88813 1.33796 1.20086 1.89583 1.22947 0.95128 0.82695 1.00133 0.75051 0.88303 0.89261 0.91840 0.88112 0.88731 0.89057 0.88095 0.91592 0.86551 0.93588 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.39 19.25 74.32 1.43 -7.96 16 2 C -0.16 -6.64 10.85 31.13 0.34 -6.31 16 3 C 0.23 10.06 4.91 84.58 0.42 10.48 16 4 N -0.45 -23.05 2.60 -645.40 -1.68 -24.72 16 5 C -0.36 -20.03 9.31 84.04 0.78 -19.25 16 6 H 0.07 4.48 7.40 -2.91 -0.02 4.45 16 7 C 0.00 0.22 4.82 84.93 0.41 0.63 16 8 N -0.87 -45.29 9.58 21.66 0.21 -45.08 16 9 Si 0.98 42.15 29.61 68.60 2.03 44.18 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 C 0.44 21.05 7.07 87.66 0.62 21.67 16 14 O -0.62 -34.56 14.73 -3.07 -0.05 -34.61 16 15 C -0.11 -3.84 3.54 29.85 0.11 -3.74 16 16 C -0.10 -3.18 2.67 -9.80 -0.03 -3.20 16 17 H 0.07 2.47 8.02 -2.39 -0.02 2.45 16 18 C -0.14 -3.08 6.71 31.90 0.21 -2.87 16 19 C 0.04 0.88 7.72 72.66 0.56 1.45 16 20 O -0.40 -12.57 11.52 -148.98 -1.72 -14.29 16 21 C 0.07 2.36 6.31 72.36 0.46 2.81 16 22 H 0.23 6.86 7.80 -4.42 -0.03 6.83 16 23 H 0.10 3.42 6.70 -2.38 -0.02 3.40 16 24 H 0.09 4.13 6.49 -2.39 -0.02 4.11 16 25 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 26 H 0.10 3.08 7.42 -2.38 -0.02 3.06 16 27 H 0.09 3.10 7.49 -2.38 -0.02 3.09 16 28 H 0.09 1.78 7.87 -2.38 -0.02 1.77 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 2.47 7.25 -2.39 -0.02 2.46 16 Total: -1.00 -67.66 279.83 5.20 -62.46 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.09 Total: 18.34 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.31 Total: -6.28 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -1.47 Total: -69.81 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -1.76 Total: -48.89 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -67.66 5.20 -62.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401366742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.882 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds