Wall clock time and date at job start Sun Mar 29 2020 21:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86799 * 120.00198 * 2 1 4 4 H 1.48496 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47255 * 299.99827 * 3 2 1 6 6 H 1.48495 * 109.46953 * 59.99674 * 3 2 1 7 7 C 1.39081 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00274 * 170.83182 * 7 2 1 9 9 N 1.36821 * 119.99774 * 350.82539 * 7 2 1 10 10 C 1.34777 * 119.99970 * 155.52704 * 9 7 2 11 11 O 1.21658 * 119.99861 * 8.72089 * 10 9 7 12 12 C 1.46952 * 119.99663 * 188.71974 * 10 9 7 13 13 C 1.32222 * 118.88068 * 195.01784 * 12 10 9 14 14 C 1.50273 * 122.55725 * 180.35100 * 13 12 10 15 15 O 1.42893 * 110.08923 * 344.34576 * 14 13 12 16 16 C 1.43269 * 113.10420 * 50.55752 * 15 14 13 17 17 C 1.50412 * 118.88812 * 14.74833 * 12 10 9 18 18 C 1.46500 * 119.99839 * 335.80439 * 9 7 2 19 19 C 1.53003 * 117.50013 * 316.56802 * 18 9 7 20 20 C 1.53005 * 117.49808 * 247.90684 * 18 9 7 21 21 H 0.96997 * 120.00096 * 5.03577 * 1 2 3 22 22 H 1.08001 * 118.72425 * 0.36269 * 13 12 10 23 23 H 1.08999 * 109.37295 * 104.54079 * 14 13 12 24 24 H 1.09006 * 109.36335 * 224.15860 * 14 13 12 25 25 H 1.08993 * 109.63945 * 50.81499 * 16 15 14 26 26 H 1.09000 * 109.63187 * 171.22789 * 16 15 14 27 27 H 1.08999 * 109.45642 * 283.39396 * 17 12 10 28 28 H 1.09003 * 109.45389 * 43.33076 * 17 12 10 29 29 H 1.08999 * 115.55261 * 102.24223 * 18 9 7 30 30 H 1.08999 * 117.49739 * 0.02562 * 19 18 9 31 31 H 1.08996 * 117.49895 * 145.02368 * 19 18 9 32 32 H 1.08995 * 117.49666 * 214.97966 * 20 18 9 33 33 H 1.08999 * 117.49585 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7075 1.3464 -0.0006 5 1 1.8888 2.3964 -1.2125 6 1 1.8887 2.3964 1.2124 7 6 2.0089 -1.2045 -0.0005 8 1 3.0785 -1.2104 -0.1496 9 7 1.3379 -2.3819 0.1879 10 6 1.8548 -3.5346 -0.2816 11 8 2.9854 -3.5561 -0.7303 12 6 1.0526 -4.7655 -0.2515 13 6 1.6587 -5.9273 -0.4284 14 6 0.9184 -7.2350 -0.4212 15 8 -0.3808 -7.0604 0.1477 16 6 -1.1072 -5.9708 -0.4335 17 6 -0.4291 -4.6616 -0.0144 18 6 0.0547 -2.3886 0.8946 19 6 -0.0579 -1.5402 2.1628 20 6 0.0068 -3.0661 2.2656 21 1 -0.4850 0.8368 -0.0737 22 1 2.7274 -5.9368 -0.5840 23 1 0.8193 -7.6001 -1.4434 24 1 1.4762 -7.9628 0.1682 25 1 -1.0969 -6.0616 -1.5196 26 1 -2.1363 -5.9839 -0.0745 27 1 -0.6153 -4.4749 1.0432 28 1 -0.8345 -3.8398 -0.6046 29 1 -0.8298 -2.4687 0.2626 30 1 0.8227 -0.9766 2.4711 31 1 -1.0164 -1.0624 2.3653 32 1 -0.9092 -3.5915 2.5356 33 1 0.9300 -3.5072 2.6415 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408180079.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:05 Heat of formation + Delta-G solvation = -29.884916 kcal Electronic energy + Delta-G solvation = -17606.773946 eV Core-core repulsion = 14827.161076 eV Total energy + Delta-G solvation = -2779.612870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33277 -39.54370 -38.11126 -35.21664 -34.21743 -33.14864 -31.89104 -27.87646 -26.32859 -24.84593 -23.56354 -22.84841 -21.62311 -19.19086 -18.93391 -17.92411 -17.10521 -16.97836 -16.68509 -15.93700 -15.73849 -15.59445 -15.32491 -14.68016 -14.23285 -13.93471 -13.46731 -13.31292 -13.20188 -13.00233 -12.57225 -12.34866 -12.20951 -12.08606 -11.73500 -11.59657 -11.01817 -10.80130 -10.59533 -10.10466 -9.94205 -9.59117 -8.32917 -5.96852 0.55200 1.36293 1.38171 1.50098 2.23592 2.38212 2.87744 2.98505 3.11402 3.22549 3.81225 3.89961 4.04243 4.18341 4.36426 4.37990 4.43566 4.52274 4.58298 4.65858 4.79704 4.84479 4.94151 5.14168 5.15860 5.35174 5.40269 5.41811 5.47768 5.73294 6.08849 6.19597 6.51434 7.13183 7.42218 7.99753 8.67630 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037585 B = 0.008362 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.793297 B = 3347.785133 C = 3762.957554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.016 3.984 3 Si 0.980 3.020 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.354 4.354 8 H 0.063 0.937 9 N -0.420 5.420 10 C 0.460 3.540 11 O -0.645 6.645 12 C -0.146 4.146 13 C -0.152 4.152 14 C 0.099 3.901 15 O -0.389 6.389 16 C 0.061 3.939 17 C -0.130 4.130 18 C 0.108 3.892 19 C -0.131 4.131 20 C -0.191 4.191 21 H 0.275 0.725 22 H 0.108 0.892 23 H 0.086 0.914 24 H 0.129 0.871 25 H 0.058 0.942 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 -8.416 2.545 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.189 4.189 3 Si 0.804 3.196 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.482 4.482 8 H 0.081 0.919 9 N -0.135 5.135 10 C 0.253 3.747 11 O -0.536 6.536 12 C -0.149 4.149 13 C -0.173 4.173 14 C 0.023 3.977 15 O -0.308 6.308 16 C -0.015 4.015 17 C -0.166 4.166 18 C 0.004 3.996 19 C -0.168 4.168 20 C -0.229 4.229 21 H 0.086 0.914 22 H 0.126 0.874 23 H 0.104 0.896 24 H 0.147 0.853 25 H 0.076 0.924 26 H 0.145 0.855 27 H 0.130 0.870 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.151 0.849 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.814 -8.323 2.566 11.058 hybrid contribution 1.179 1.527 -0.494 1.991 sum -5.634 -6.796 2.073 9.068 Atomic orbital electron populations 1.69936 1.06206 1.28687 1.45477 1.25883 0.96459 1.01378 0.95157 0.85086 0.78057 0.77869 0.78622 1.20659 1.19663 1.18826 1.19506 0.92637 0.84318 1.51714 0.91931 1.43181 1.18903 1.05467 1.45950 1.19020 0.87544 0.85648 0.82523 1.90538 1.21806 1.86917 1.54291 1.21021 0.97149 0.92463 1.04272 1.23674 1.00813 0.95147 0.97679 1.21613 0.82860 0.92718 1.00533 1.88045 1.27860 1.51453 1.63397 1.22891 0.96494 0.84124 0.97972 1.21871 0.90076 0.99623 1.05038 1.21443 0.86709 1.04528 0.86894 1.22713 1.01642 0.92064 1.00430 1.23693 1.03151 0.95998 1.00069 0.91430 0.87448 0.89578 0.85350 0.92394 0.85544 0.86950 0.90356 0.86841 0.92203 0.87973 0.84895 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.62 10.14 21.69 0.22 -43.40 16 2 C 0.02 0.85 4.49 84.97 0.38 1.23 16 3 Si 0.98 42.44 29.57 68.60 2.03 44.47 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.35 -20.59 8.90 84.12 0.75 -19.84 16 8 H 0.06 3.99 7.37 -2.91 -0.02 3.97 16 9 N -0.42 -22.39 2.92 -617.34 -1.80 -24.19 16 10 C 0.46 24.61 7.40 86.53 0.64 25.25 16 11 O -0.65 -39.69 15.86 -4.21 -0.07 -39.76 16 12 C -0.15 -5.99 5.56 -18.70 -0.10 -6.09 16 13 C -0.15 -5.42 9.56 24.52 0.23 -5.18 16 14 C 0.10 2.49 7.04 71.10 0.50 2.99 16 15 O -0.39 -10.43 10.83 -148.98 -1.61 -12.05 16 16 C 0.06 1.53 6.89 72.08 0.50 2.03 16 17 C -0.13 -4.21 4.03 29.85 0.12 -4.09 16 18 C 0.11 4.70 2.06 44.99 0.09 4.79 16 19 C -0.13 -5.31 7.97 30.62 0.24 -5.07 16 20 C -0.19 -6.76 8.00 30.62 0.24 -6.51 16 21 H 0.28 12.92 8.31 -92.71 -0.77 12.15 16 22 H 0.11 4.19 7.39 -2.91 -0.02 4.17 16 23 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 25 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 26 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.11 3.47 3.94 -2.39 -0.01 3.46 16 28 H 0.08 2.73 6.07 -2.39 -0.01 2.71 16 29 H 0.11 4.81 5.99 -2.39 -0.01 4.79 16 30 H 0.06 2.76 7.55 -2.39 -0.02 2.74 16 31 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.13 3.58 7.36 -2.39 -0.02 3.56 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -69.51 265.32 3.48 -66.03 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.12 Total: 19.40 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 3.60 Total: -10.50 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -1.58 Total: -67.60 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -1.68 Total: -51.81 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -69.51 3.48 -66.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408180079.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.147 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds