Wall clock time and date at job start Sun Mar 29 2020 21:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47049 * 2 1 4 4 C 1.53001 * 109.47177 * 119.99465 * 2 1 3 5 5 C 1.50703 * 109.47101 * 184.99892 * 4 2 1 6 6 H 1.08000 * 119.99679 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00101 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00384 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99934 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47038 * 90.00108 * 9 7 5 11 11 H 1.48498 * 109.47002 * 210.00036 * 9 7 5 12 12 H 1.48505 * 109.47035 * 330.00079 * 9 7 5 13 13 S 1.81400 * 109.47119 * 239.99797 * 2 1 3 14 14 C 1.81396 * 102.99909 * 64.99787 * 13 2 1 15 15 C 1.50706 * 109.47276 * 179.97438 * 14 13 2 16 16 C 1.38675 * 120.41529 * 89.99986 * 15 14 13 17 17 C 1.38631 * 118.41792 * 179.97438 * 16 15 14 18 18 C 1.38221 * 119.16077 * 0.25627 * 17 16 15 19 19 N 1.31860 * 120.76509 * 359.49797 * 18 17 16 20 20 C 1.31882 * 121.72556 * 0.49011 * 19 18 17 21 21 H 1.08998 * 109.47245 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46902 * 300.00207 * 1 2 3 23 23 H 1.09001 * 109.47504 * 59.99993 * 1 2 3 24 24 H 1.08994 * 109.47097 * 304.99852 * 4 2 1 25 25 H 1.08999 * 109.46791 * 65.00098 * 4 2 1 26 26 H 0.96998 * 120.00201 * 179.97438 * 8 7 5 27 27 H 1.09008 * 109.47372 * 60.00055 * 14 13 2 28 28 H 1.08998 * 109.47625 * 299.99957 * 14 13 2 29 29 H 1.07997 * 120.79161 * 0.02562 * 16 15 14 30 30 H 1.08002 * 120.41548 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.62066 * 179.74470 * 18 17 16 32 32 H 1.07993 * 119.62126 * 179.75488 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1933 2.3578 8 7 5.5413 -1.1010 2.4129 9 14 3.3017 -2.1095 3.6948 10 1 3.1712 -3.5394 3.3158 11 1 4.0451 -2.0029 4.9759 12 1 1.9505 -1.5147 3.8554 13 16 2.1347 -0.8552 -1.4811 14 6 1.5664 0.2152 -2.8309 15 6 1.9984 -0.3691 -4.1512 16 6 1.1780 -1.2599 -4.8267 17 6 1.6161 -1.7716 -6.0384 18 6 2.8497 -1.3837 -6.5267 19 7 3.6015 -0.5306 -5.8591 20 6 3.2167 -0.0234 -4.7041 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6055 -0.2615 2.1369 25 1 1.7517 -1.7714 1.2057 26 1 6.0256 -1.5076 3.1484 27 1 2.0001 1.2084 -2.7142 28 1 0.4792 0.2880 -2.8037 29 1 0.2202 -1.5476 -4.4191 30 1 1.0034 -2.4680 -6.5915 31 1 3.2002 -1.7810 -7.4679 32 1 3.8613 0.6697 -4.1842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451048176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:45 Heat of formation + Delta-G solvation = 18.050625 kcal Electronic energy + Delta-G solvation = -13888.673938 eV Core-core repulsion = 11553.892580 eV Total energy + Delta-G solvation = -2334.781358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08629 -34.69241 -33.60373 -32.09507 -31.87674 -28.26573 -27.13525 -23.55655 -23.13038 -22.24215 -20.36913 -17.10458 -16.72325 -16.36541 -15.82546 -15.14251 -14.82517 -14.35347 -13.60532 -13.49846 -13.24430 -13.06208 -12.73939 -12.62829 -12.18444 -11.81177 -11.74233 -11.21553 -11.00246 -10.48146 -10.02771 -9.73835 -9.71284 -9.46660 -9.31054 -9.13416 -8.76693 -8.52192 -6.97588 -6.01407 -3.99300 0.96857 1.26267 2.38087 3.22950 3.31004 3.38349 3.39494 3.89455 4.42698 4.45425 4.74490 4.76616 4.95176 4.99898 5.28789 5.31974 5.44788 5.51789 5.59047 5.72281 5.77757 5.83093 6.06921 6.19693 6.25278 6.39398 6.49683 6.68685 7.02932 7.18715 7.73169 7.97682 8.54111 9.06268 9.59317 11.11558 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.034397 B = 0.005699 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.833548 B = 4912.126261 C = 5346.343884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 H 0.081 0.919 4 C 0.004 3.996 5 C -0.515 4.515 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.267 1.267 13 S -0.212 6.212 14 C -0.067 4.067 15 C -0.109 4.109 16 C -0.064 4.064 17 C -0.175 4.175 18 C 0.091 3.909 19 N -0.484 5.484 20 C 0.116 3.884 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.020 0.980 26 H 0.262 0.738 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.304 1.153 -13.540 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 H 0.099 0.901 4 C -0.035 4.035 5 C -0.553 4.553 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.191 1.191 13 S 0.018 5.982 14 C -0.215 4.215 15 C -0.112 4.112 16 C -0.091 4.091 17 C -0.194 4.194 18 C -0.066 4.066 19 N -0.192 5.192 20 C -0.042 4.042 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.753 0.415 -13.797 16.901 hybrid contribution -1.878 0.285 1.291 2.296 sum -11.631 0.700 -12.506 17.093 Atomic orbital electron populations 1.22154 0.95295 1.02244 1.00952 1.23200 0.95798 1.01875 0.96067 0.90110 1.19484 0.98117 0.95311 0.90556 1.21122 0.89170 1.35380 1.09670 0.90033 1.24979 0.94692 0.95839 0.97717 1.69905 1.06448 1.45295 1.32188 0.86877 0.80403 0.80787 0.81820 1.20271 1.21344 1.19149 1.87552 1.75602 1.36331 0.98753 1.22291 1.03349 1.01828 0.94019 1.20334 0.96333 0.98781 0.95754 1.21480 0.99643 0.94091 0.93920 1.22093 0.98253 1.01889 0.97208 1.22754 0.90989 0.93719 0.99172 1.67723 1.34287 1.09479 1.07750 1.22738 0.93241 0.97134 0.91132 0.91959 0.92147 0.93688 0.95095 0.96198 0.92767 0.89351 0.89832 0.84807 0.84879 0.82955 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.10 37.16 0.34 -1.88 16 2 C -0.04 -0.78 2.77 -26.73 -0.07 -0.85 16 3 H 0.08 1.55 8.14 -51.92 -0.42 1.13 16 4 C 0.00 0.08 3.51 -27.88 -0.10 -0.01 16 5 C -0.52 -14.49 9.09 -34.44 -0.31 -14.80 16 6 H 0.08 2.49 7.85 -52.49 -0.41 2.08 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 9 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 S -0.21 -4.02 20.44 -107.50 -2.20 -6.22 16 14 C -0.07 -0.93 5.79 36.01 0.21 -0.72 16 15 C -0.11 -1.48 5.16 -104.48 -0.54 -2.02 16 16 C -0.06 -0.75 9.86 -39.28 -0.39 -1.14 16 17 C -0.17 -1.84 10.11 -39.44 -0.40 -2.24 16 18 C 0.09 1.06 11.18 -17.55 -0.20 0.87 16 19 N -0.48 -6.98 10.36 -13.25 -0.14 -7.11 16 20 C 0.12 1.66 10.86 -17.55 -0.19 1.47 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.57 6.92 -51.93 -0.36 0.21 16 24 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 25 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.09 1.17 8.09 -51.92 -0.42 0.75 16 28 H 0.08 1.01 7.10 -51.93 -0.37 0.64 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 285.58 15.07 4.30 4.30 Total: -1.00 -31.89 285.58 -8.13 -40.02 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.45 Total: -1.46 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -1.75 Total: -19.41 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.64 Total: -34.20 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.20 Total: -6.22 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.89 -8.13 -40.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451048176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.067 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds