Wall clock time and date at job start Sun Mar 29 2020 21:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47049 * 2 1 4 4 C 1.53001 * 109.47177 * 119.99465 * 2 1 3 5 5 C 1.50703 * 109.47101 * 184.99892 * 4 2 1 6 6 H 1.08000 * 119.99679 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00101 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00384 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99934 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47038 * 90.00108 * 9 7 5 11 11 H 1.48498 * 109.47002 * 210.00036 * 9 7 5 12 12 H 1.48505 * 109.47035 * 330.00079 * 9 7 5 13 13 S 1.81400 * 109.47119 * 239.99797 * 2 1 3 14 14 C 1.81396 * 102.99909 * 64.99787 * 13 2 1 15 15 C 1.50706 * 109.47276 * 179.97438 * 14 13 2 16 16 C 1.38675 * 120.41529 * 89.99986 * 15 14 13 17 17 C 1.38631 * 118.41792 * 179.97438 * 16 15 14 18 18 C 1.38221 * 119.16077 * 0.25627 * 17 16 15 19 19 N 1.31860 * 120.76509 * 359.49797 * 18 17 16 20 20 C 1.31882 * 121.72556 * 0.49011 * 19 18 17 21 21 H 1.08998 * 109.47245 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46902 * 300.00207 * 1 2 3 23 23 H 1.09001 * 109.47504 * 59.99993 * 1 2 3 24 24 H 1.08994 * 109.47097 * 304.99852 * 4 2 1 25 25 H 1.08999 * 109.46791 * 65.00098 * 4 2 1 26 26 H 0.96998 * 120.00201 * 179.97438 * 8 7 5 27 27 H 1.09008 * 109.47372 * 60.00055 * 14 13 2 28 28 H 1.08998 * 109.47625 * 299.99957 * 14 13 2 29 29 H 1.07997 * 120.79161 * 0.02562 * 16 15 14 30 30 H 1.08002 * 120.41548 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.62066 * 179.74470 * 18 17 16 32 32 H 1.07993 * 119.62126 * 179.75488 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1933 2.3578 8 7 5.5413 -1.1010 2.4129 9 14 3.3017 -2.1095 3.6948 10 1 3.1712 -3.5394 3.3158 11 1 4.0451 -2.0029 4.9759 12 1 1.9505 -1.5147 3.8554 13 16 2.1347 -0.8552 -1.4811 14 6 1.5664 0.2152 -2.8309 15 6 1.9984 -0.3691 -4.1512 16 6 1.1780 -1.2599 -4.8267 17 6 1.6161 -1.7716 -6.0384 18 6 2.8497 -1.3837 -6.5267 19 7 3.6015 -0.5306 -5.8591 20 6 3.2167 -0.0234 -4.7041 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6055 -0.2615 2.1369 25 1 1.7517 -1.7714 1.2057 26 1 6.0256 -1.5076 3.1484 27 1 2.0001 1.2084 -2.7142 28 1 0.4792 0.2880 -2.8037 29 1 0.2202 -1.5476 -4.4191 30 1 1.0034 -2.4680 -6.5915 31 1 3.2002 -1.7810 -7.4679 32 1 3.8613 0.6697 -4.1842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451048176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:44 Heat of formation + Delta-G solvation = -1.130354 kcal Electronic energy + Delta-G solvation = -13889.505688 eV Core-core repulsion = 11553.892580 eV Total energy + Delta-G solvation = -2335.613108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04087 -36.41572 -34.63510 -34.10836 -32.80937 -29.99070 -28.25517 -24.92513 -24.50477 -23.28894 -22.00878 -18.88802 -18.03833 -17.36912 -17.22003 -16.48711 -16.14329 -15.98831 -14.97316 -14.67440 -14.47334 -14.27242 -14.09829 -13.95010 -13.77423 -13.37346 -12.90892 -12.66770 -12.50606 -12.16373 -11.76790 -11.56405 -11.40158 -10.81528 -10.71021 -10.54964 -10.40580 -9.82550 -8.46416 -8.23251 -6.26979 -0.05879 0.32957 1.11319 1.35927 1.36810 1.47529 1.88023 2.37227 2.92740 3.11047 3.48995 3.75915 3.81761 4.04711 4.07253 4.09540 4.22460 4.43347 4.48719 4.57264 4.72272 4.84490 4.90386 4.97563 5.09321 5.18002 5.24196 5.30299 5.39188 5.64138 5.77470 6.31804 6.80199 7.01609 7.35057 8.92286 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.034397 B = 0.005699 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.833548 B = 4912.126261 C = 5346.343884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 H 0.071 0.929 4 C 0.005 3.995 5 C -0.515 4.515 6 H 0.039 0.961 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.944 3.056 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.241 1.241 13 S -0.287 6.287 14 C -0.039 4.039 15 C -0.125 4.125 16 C -0.065 4.065 17 C -0.165 4.165 18 C 0.084 3.916 19 N -0.515 5.515 20 C 0.095 3.905 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.019 0.981 26 H 0.264 0.736 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.182 0.818 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.464 0.437 -14.273 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 H 0.090 0.910 4 C -0.033 4.033 5 C -0.554 4.554 6 H 0.057 0.943 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.164 1.164 13 S -0.057 6.057 14 C -0.187 4.187 15 C -0.128 4.128 16 C -0.093 4.093 17 C -0.185 4.185 18 C -0.073 4.073 19 N -0.223 5.223 20 C -0.064 4.064 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.174 0.826 30 H 0.189 0.811 31 H 0.199 0.801 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.938 -0.284 -14.526 19.454 hybrid contribution -0.839 0.532 1.310 1.644 sum -13.777 0.248 -13.216 19.092 Atomic orbital electron populations 1.22069 0.91482 1.03093 1.02955 1.23055 0.98716 1.00317 0.94059 0.91033 1.19411 0.94726 0.95879 0.93287 1.21398 0.91895 1.33950 1.08142 0.94297 1.25961 0.95533 0.97139 1.00716 1.70077 1.08547 1.47254 1.33498 0.85746 0.80007 0.79261 0.78172 1.19879 1.21109 1.16394 1.87688 1.77456 1.38749 1.01775 1.22215 1.04649 1.00251 0.91546 1.20345 0.96621 1.00089 0.95758 1.21842 1.00199 0.93062 0.94199 1.22504 0.97905 1.01383 0.96659 1.23362 0.91335 0.92732 0.99890 1.67703 1.35616 1.10851 1.08171 1.22746 0.93886 0.97943 0.91781 0.91641 0.90865 0.90958 0.94163 0.96315 0.92760 0.89143 0.87089 0.82556 0.81118 0.80076 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.10 71.98 0.66 -3.04 16 2 C -0.03 -1.23 2.77 30.60 0.08 -1.15 16 3 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 4 C 0.01 0.24 3.51 29.85 0.10 0.34 16 5 C -0.52 -29.78 9.09 25.60 0.23 -29.55 16 6 H 0.04 2.51 7.85 -2.91 -0.02 2.49 16 7 C 0.00 0.16 5.47 84.65 0.46 0.62 16 8 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 9 Si 0.94 44.65 27.47 68.60 1.88 46.53 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 13 S -0.29 -10.85 20.44 -56.49 -1.15 -12.00 16 14 C -0.04 -1.03 5.79 71.24 0.41 -0.61 16 15 C -0.12 -3.25 5.16 -19.77 -0.10 -3.36 16 16 C -0.07 -1.36 9.86 22.47 0.22 -1.14 16 17 C -0.17 -2.94 10.11 22.36 0.23 -2.71 16 18 C 0.08 1.79 11.18 84.68 0.95 2.74 16 19 N -0.51 -14.66 10.36 -195.85 -2.03 -16.69 16 20 C 0.09 2.74 10.86 84.67 0.92 3.66 16 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.07 1.56 6.92 -2.39 -0.02 1.54 16 24 H 0.04 1.78 7.20 -2.39 -0.02 1.76 16 25 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 26 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 27 H 0.09 2.34 8.09 -2.39 -0.02 2.32 16 28 H 0.11 2.32 7.10 -2.39 -0.02 2.30 16 29 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 30 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 32 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -71.95 285.58 4.20 -67.76 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.03 Total: 9.41 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 4.17 Total: -34.20 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.73 Total: -77.50 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Atomic # 16 Polarization: -10.85 SS G_CDS: -1.15 Total: -12.00 kcal Total: -71.95 4.20 -67.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451048176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.628 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds