Wall clock time and date at job start Sun Mar 29 2020 21:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47204 * 2 1 4 4 C 1.53001 * 109.47206 * 239.99855 * 2 1 3 5 5 C 1.50696 * 109.46983 * 175.00143 * 4 2 1 6 6 H 1.08007 * 120.00139 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00250 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00131 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99831 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47166 * 90.00196 * 9 7 5 11 11 H 1.48503 * 109.47312 * 209.99972 * 9 7 5 12 12 H 1.48497 * 109.47149 * 330.00146 * 9 7 5 13 13 S 1.81407 * 109.46878 * 120.00176 * 2 1 3 14 14 C 1.81408 * 102.99741 * 295.00137 * 13 2 1 15 15 C 1.50695 * 109.46995 * 180.02562 * 14 13 2 16 16 C 1.38678 * 120.41675 * 270.25337 * 15 14 13 17 17 C 1.38627 * 118.41930 * 180.24221 * 16 15 14 18 18 C 1.38232 * 119.16085 * 359.75178 * 17 16 15 19 19 N 1.31857 * 120.76541 * 359.97438 * 18 17 16 20 20 C 1.31889 * 121.72235 * 0.02562 * 19 18 17 21 21 H 1.08997 * 109.47561 * 299.99857 * 1 2 3 22 22 H 1.09002 * 109.46957 * 60.00326 * 1 2 3 23 23 H 1.09005 * 109.47210 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47512 * 295.00309 * 4 2 1 25 25 H 1.08999 * 109.46929 * 55.00126 * 4 2 1 26 26 H 0.97006 * 119.99743 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.46754 * 60.00177 * 14 13 2 28 28 H 1.08996 * 109.46923 * 299.99976 * 14 13 2 29 29 H 1.07994 * 120.78944 * 359.96926 * 16 15 14 30 30 H 1.07997 * 120.42083 * 179.72800 * 17 16 15 31 31 H 1.07999 * 119.61954 * 180.02562 * 18 17 16 32 32 H 1.08002 * 119.61237 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0862 -0.5390 7 6 4.2304 -1.1927 -2.3582 8 7 5.5411 -1.0994 -2.4138 9 14 3.3016 -2.1078 -3.6958 10 1 2.9400 -1.1626 -4.7826 11 1 4.1605 -3.1879 -4.2446 12 1 2.0661 -2.7004 -3.1236 13 16 2.1346 -0.8552 1.4812 14 6 1.5663 0.2153 2.8310 15 6 1.9982 -0.3690 4.1512 16 6 1.1801 -1.2639 4.8243 17 6 1.6161 -1.7719 6.0382 18 6 2.8454 -1.3764 6.5313 19 7 3.5995 -0.5274 5.8612 20 6 3.2169 -0.0241 4.7037 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7517 -1.7715 -1.2056 25 1 1.6054 -0.2618 -2.1369 26 1 6.0255 -1.5062 -3.1492 27 1 0.4790 0.2880 2.8037 28 1 2.0000 1.2084 2.7142 29 1 0.2241 -1.5546 4.4146 30 1 1.0029 -2.4675 6.5917 31 1 3.1925 -1.7679 7.4761 32 1 3.8616 0.6691 4.1839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451048177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:47 Heat of formation + Delta-G solvation = 18.065588 kcal Electronic energy + Delta-G solvation = -13888.872100 eV Core-core repulsion = 11554.091391 eV Total energy + Delta-G solvation = -2334.780709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08585 -34.69192 -33.60430 -32.09455 -31.87620 -28.26543 -27.13523 -23.55622 -23.12947 -22.24189 -20.36827 -17.10419 -16.72423 -16.36503 -15.83076 -15.13945 -14.80758 -14.35886 -13.61844 -13.49483 -13.24553 -13.06164 -12.72744 -12.62326 -12.19195 -11.85293 -11.72508 -11.16592 -11.02471 -10.51936 -9.98703 -9.76087 -9.69226 -9.46496 -9.29696 -9.15253 -8.76679 -8.52264 -6.97509 -6.01405 -3.99242 0.96774 1.26320 2.37987 3.23075 3.30034 3.38381 3.40702 3.89505 4.42634 4.45565 4.74520 4.76653 4.95176 4.99928 5.28810 5.32003 5.44825 5.51855 5.59027 5.72329 5.77769 5.83080 6.06968 6.19726 6.25315 6.39479 6.50018 6.68685 7.00398 7.20927 7.73330 7.97658 8.54139 9.06289 9.59345 11.11547 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.034429 B = 0.005697 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.067406 B = 4913.922034 C = 5347.649047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 H 0.080 0.920 4 C 0.003 3.997 5 C -0.515 4.515 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.266 1.266 13 S -0.212 6.212 14 C -0.067 4.067 15 C -0.109 4.109 16 C -0.063 4.063 17 C -0.175 4.175 18 C 0.091 3.909 19 N -0.484 5.484 20 C 0.116 3.884 21 H 0.044 0.956 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.024 0.976 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 1.113 13.573 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 H 0.099 0.901 4 C -0.035 4.035 5 C -0.553 4.553 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.191 1.191 13 S 0.018 5.982 14 C -0.215 4.215 15 C -0.112 4.112 16 C -0.091 4.091 17 C -0.194 4.194 18 C -0.066 4.066 19 N -0.192 5.192 20 C -0.042 4.042 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.754 0.371 13.833 16.930 hybrid contribution -1.877 0.319 -1.316 2.315 sum -11.631 0.690 12.517 17.101 Atomic orbital electron populations 1.22155 0.95296 1.02248 1.00950 1.23193 0.95795 1.01847 0.96120 0.90134 1.19480 0.98067 0.95595 0.90340 1.21123 0.89185 1.35367 1.09669 0.90036 1.24980 0.94703 0.95809 0.97746 1.69909 1.06469 1.45285 1.32167 0.86882 0.80365 0.80142 0.82550 1.20328 1.21300 1.19083 1.87550 1.75598 1.36304 0.98732 1.22290 1.03353 1.01832 0.94014 1.20332 0.96345 0.98752 0.95779 1.21479 0.99638 0.94052 0.93950 1.22093 0.98292 1.01900 0.97159 1.22756 0.90983 0.93715 0.99182 1.67726 1.34200 1.09607 1.07710 1.22740 0.93239 0.97120 0.91141 0.93686 0.92150 0.91955 0.95746 0.95544 0.92771 0.89829 0.89351 0.84806 0.84881 0.82956 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.10 37.16 0.34 -1.88 16 2 C -0.04 -0.78 2.77 -26.73 -0.07 -0.86 16 3 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 4 C 0.00 0.08 3.52 -27.88 -0.10 -0.02 16 5 C -0.52 -14.49 9.09 -34.44 -0.31 -14.80 16 6 H 0.08 2.49 7.84 -52.48 -0.41 2.08 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 9 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 S -0.21 -4.02 20.44 -107.50 -2.20 -6.21 16 14 C -0.07 -0.93 5.79 36.00 0.21 -0.72 16 15 C -0.11 -1.48 5.16 -104.48 -0.54 -2.02 16 16 C -0.06 -0.75 9.86 -39.28 -0.39 -1.14 16 17 C -0.17 -1.84 10.11 -39.44 -0.40 -2.24 16 18 C 0.09 1.06 11.18 -17.54 -0.20 0.87 16 19 N -0.48 -6.97 10.36 -13.25 -0.14 -7.11 16 20 C 0.12 1.66 10.86 -17.55 -0.19 1.47 16 21 H 0.04 0.57 6.92 -51.93 -0.36 0.21 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 25 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.08 1.01 7.10 -51.92 -0.37 0.64 16 28 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 285.58 15.07 4.30 4.30 Total: -1.00 -31.90 285.58 -8.13 -40.03 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.45 Total: -1.46 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.75 Total: -19.43 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.64 Total: -34.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.20 Total: -6.21 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.90 -8.13 -40.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451048177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.097 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds