Wall clock time and date at job start Sun Mar 29 2020 21:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 113.25360 * 2 1 4 4 C 1.52997 * 109.47026 * 292.74742 * 3 2 1 5 5 F 1.39895 * 109.47298 * 54.49407 * 4 3 2 6 6 F 1.39900 * 109.46853 * 174.49849 * 4 3 2 7 7 F 1.39904 * 109.47015 * 294.49730 * 4 3 2 8 8 C 1.53509 * 114.16985 * 227.05046 * 2 1 3 9 9 N 1.47484 * 87.92938 * 220.33055 * 8 2 1 10 10 C 1.46901 * 110.99868 * 138.70351 * 9 8 2 11 11 C 1.50706 * 109.46739 * 169.99584 * 10 9 8 12 12 H 1.07998 * 120.00070 * 359.72610 * 11 10 9 13 13 C 1.37881 * 119.99609 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99944 * 359.72798 * 13 11 10 15 15 Si 1.86791 * 119.99690 * 179.72726 * 13 11 10 16 16 H 1.48500 * 109.47418 * 90.00373 * 15 13 11 17 17 H 1.48503 * 109.47010 * 210.00169 * 15 13 11 18 18 H 1.48503 * 109.47395 * 329.99949 * 15 13 11 19 19 C 1.47479 * 87.83672 * 27.00873 * 9 8 2 20 20 H 1.08997 * 109.46974 * 199.12180 * 1 2 3 21 21 H 1.09007 * 109.46926 * 319.12826 * 1 2 3 22 22 H 1.09000 * 109.46534 * 79.12550 * 1 2 3 23 23 H 1.08998 * 109.47106 * 52.75147 * 3 2 1 24 24 H 1.09001 * 109.46758 * 172.75000 * 3 2 1 25 25 H 1.09001 * 113.48120 * 105.56261 * 8 2 1 26 26 H 1.09002 * 113.47885 * 335.09299 * 8 2 1 27 27 H 1.09005 * 109.46844 * 50.00181 * 10 9 8 28 28 H 1.08997 * 109.47288 * 289.99853 * 10 9 8 29 29 H 0.97002 * 119.99429 * 179.97438 * 14 13 11 30 30 H 1.09006 * 113.47410 * 87.75717 * 19 9 8 31 31 H 1.08995 * 113.47409 * 218.22429 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1342 1.4058 0.0000 4 6 1.8230 2.0945 -1.3303 5 9 0.4426 2.0708 -1.5561 6 9 2.2653 3.4210 -1.2832 7 9 2.4769 1.4215 -2.3680 8 6 2.1586 -0.9543 -1.0251 9 7 3.1619 -1.3059 -0.0029 10 6 3.4330 -2.7496 -0.0061 11 6 4.6264 -3.0385 0.8677 12 1 5.1354 -2.2299 1.3712 13 6 5.0715 -4.3346 1.0202 14 7 4.4514 -5.3192 0.4075 15 14 6.5553 -4.6918 2.0972 16 1 6.1066 -4.9453 3.4899 17 1 7.2654 -5.8892 1.5802 18 1 7.4736 -3.5249 2.0777 19 6 2.1586 -0.9588 1.0208 20 1 -0.3633 -0.9709 0.3366 21 1 -0.3633 0.7772 0.6725 22 1 -0.3632 0.1939 -1.0092 23 1 1.7061 1.9852 0.8180 24 1 3.2142 1.3370 0.1297 25 1 2.5811 -0.4445 -1.8910 26 1 1.5091 -1.7854 -1.3000 27 1 3.6405 -3.0780 -1.0246 28 1 2.5638 -3.2835 0.3778 29 1 4.7648 -6.2309 0.5146 30 1 1.5090 -1.7912 1.2919 31 1 2.5811 -0.4529 1.8889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453021289.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:58 Heat of formation + Delta-G solvation = -125.928530 kcal Electronic energy + Delta-G solvation = -17592.403482 eV Core-core repulsion = 14266.769108 eV Total energy + Delta-G solvation = -3325.634374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.01488 -47.51802 -47.46729 -39.87739 -33.68590 -32.18197 -29.22987 -27.66425 -25.48723 -24.29918 -23.19588 -20.74335 -18.92074 -18.42698 -18.13437 -16.72943 -16.35851 -15.05366 -14.97748 -14.55468 -14.28659 -14.22919 -14.04756 -13.90670 -13.64629 -13.46935 -13.02331 -12.58251 -12.19440 -12.15941 -11.72326 -11.65908 -11.21910 -11.08510 -10.92028 -10.50459 -10.28473 -9.78298 -9.63161 -9.21763 -8.44789 -7.87125 -6.04634 -4.05958 2.90255 3.30836 3.36991 3.41818 3.89950 4.12185 4.20262 4.41662 4.64085 4.85407 4.93068 5.29719 5.30341 5.40351 5.60909 5.85995 5.90157 6.01440 6.04672 6.22144 6.25459 6.37933 6.50371 6.60753 7.17581 7.65242 7.85046 8.09774 8.44672 9.01521 9.58265 11.06458 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.045179 B = 0.005827 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.605572 B = 4803.729026 C = 4981.664755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.131 4.131 4 C 0.453 3.547 5 F -0.185 7.185 6 F -0.191 7.191 7 F -0.177 7.177 8 C -0.009 4.009 9 N -0.466 5.466 10 C 0.159 3.841 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.027 3.973 20 H 0.060 0.940 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.105 0.895 24 H 0.121 0.879 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.003 0.997 29 H 0.261 0.739 30 H 0.069 0.931 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 13.347 -1.395 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.170 4.170 4 C 0.399 3.601 5 F -0.166 7.166 6 F -0.173 7.173 7 F -0.158 7.158 8 C -0.138 4.138 9 N -0.188 5.188 10 C 0.033 3.967 11 C -0.543 4.543 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.727 3.273 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.102 4.102 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.124 0.876 24 H 0.139 0.861 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.021 0.979 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.255 13.434 -1.458 15.337 hybrid contribution -0.002 -0.817 0.324 0.879 sum -7.257 12.617 -1.134 14.599 Atomic orbital electron populations 1.21898 0.93354 1.02071 1.02406 1.21993 0.95193 0.92481 1.01212 1.22550 1.06280 0.96032 0.92095 1.20732 0.74050 0.76690 0.88586 1.93144 1.31528 1.96197 1.95749 1.93162 1.89430 1.37860 1.96839 1.93125 1.81174 1.79400 1.62114 1.24145 0.94970 0.97442 0.97285 1.68978 1.26009 1.22370 1.01441 1.20259 0.96738 0.81862 0.97881 1.21106 1.12724 0.92526 1.27974 0.91869 1.25011 0.97330 0.96216 0.96190 1.69957 1.40861 0.99751 1.43427 0.86479 0.82664 0.77812 0.80360 1.20724 1.21244 1.19761 1.23767 0.93942 0.96527 0.95979 0.92127 0.92475 0.91699 0.87632 0.86088 0.89218 0.91815 0.95339 0.97874 0.92911 0.91274 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.19 37.16 0.30 -1.40 16 2 C -0.11 -1.55 1.06 -153.97 -0.16 -1.72 16 3 C -0.13 -1.63 4.87 -26.73 -0.13 -1.76 16 4 C 0.45 5.81 3.15 37.16 0.12 5.93 16 5 F -0.18 -2.33 14.37 2.25 0.03 -2.30 16 6 F -0.19 -2.44 17.32 2.25 0.04 -2.40 16 7 F -0.18 -2.58 14.44 2.25 0.03 -2.55 16 8 C -0.01 -0.16 6.63 -7.54 -0.05 -0.21 16 9 N -0.47 -9.87 6.10 -246.03 -1.50 -11.37 16 10 C 0.16 4.13 4.57 -4.97 -0.02 4.10 16 11 C -0.50 -14.34 9.39 -34.44 -0.32 -14.67 16 12 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 13 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 15 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.03 0.48 6.85 -7.54 -0.05 0.43 16 20 H 0.06 0.75 7.79 -51.93 -0.40 0.34 16 21 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 22 H 0.06 0.78 6.64 -51.93 -0.35 0.44 16 23 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.12 1.61 7.95 -51.93 -0.41 1.20 16 25 H 0.09 1.56 5.36 -51.93 -0.28 1.28 16 26 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 27 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.00 0.09 7.30 -51.93 -0.38 -0.29 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.07 1.26 7.14 -51.93 -0.37 0.89 16 31 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 LS Contribution 265.17 15.07 4.00 4.00 Total: -1.00 -29.78 265.17 -5.93 -35.71 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -3.83 Total: -3.82 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.42 Total: -7.87 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.76 Total: -37.50 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.10 Total: -7.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.78 -5.93 -35.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453021289.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.222 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds