Wall clock time and date at job start Sun Mar 29 2020 22:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46959 * 143.16240 * 3 2 1 5 5 C 1.37107 * 119.99700 * 93.36144 * 4 3 2 6 6 H 1.07997 * 119.99640 * 206.43666 * 5 4 3 7 7 C 1.38947 * 120.00075 * 26.43965 * 5 4 3 8 8 N 1.31413 * 120.00357 * 37.28311 * 7 5 4 9 9 Si 1.86801 * 119.99643 * 217.28470 * 7 5 4 10 10 H 1.48509 * 109.46762 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47358 * 59.99928 * 9 7 5 12 12 H 1.48497 * 109.46984 * 299.99517 * 9 7 5 13 13 C 1.34771 * 120.00198 * 273.35567 * 4 3 2 14 14 O 1.21297 * 120.00038 * 354.57093 * 13 4 3 15 15 C 1.50698 * 120.00106 * 174.56560 * 13 4 3 16 16 C 1.52995 * 110.45715 * 292.79790 * 15 13 4 17 17 C 1.54505 * 110.51102 * 170.19480 * 15 13 4 18 18 C 1.54479 * 104.06236 * 241.35574 * 17 15 13 19 19 O 1.44421 * 104.80404 * 23.97860 * 18 17 15 20 20 C 1.44787 * 105.29560 * 319.45566 * 19 18 17 21 21 H 4.40637 * 5.51534 * 180.02562 * 4 1 2 22 22 H 1.09002 * 109.46984 * 23.16218 * 3 2 1 23 23 H 1.09005 * 109.46950 * 263.16160 * 3 2 1 24 24 H 0.96995 * 119.99611 * 4.97722 * 8 7 5 25 25 H 1.09007 * 109.46964 * 63.06121 * 16 15 13 26 26 H 1.09001 * 109.47246 * 183.05701 * 16 15 13 27 27 H 1.08996 * 109.47721 * 303.05659 * 16 15 13 28 28 H 1.09005 * 110.51124 * 0.02562 * 17 15 13 29 29 H 1.08998 * 110.51556 * 122.57502 * 17 15 13 30 30 H 1.09005 * 110.37362 * 142.81180 * 18 17 15 31 31 H 1.09003 * 110.37396 * 265.14669 * 18 17 15 32 32 H 1.09000 * 110.42404 * 281.77632 * 20 19 18 33 33 H 1.08996 * 110.48783 * 159.32632 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1063 -0.8281 5 6 3.4274 2.3158 -0.2530 6 1 3.3695 3.2208 -0.8395 7 6 3.7994 2.3772 1.0843 8 7 4.5526 1.4323 1.6009 9 14 3.2289 3.8028 2.1480 10 1 3.7570 3.6347 3.5258 11 1 1.7447 3.8284 2.1870 12 1 3.7312 5.0783 1.5771 13 6 3.2941 0.9346 -2.1552 14 8 3.1295 -0.1609 -2.6492 15 6 3.6777 2.1036 -3.0254 16 6 2.5412 3.1266 -3.0781 17 6 4.0400 1.6233 -4.4485 18 6 5.5156 2.0461 -4.6230 19 8 6.0328 2.1443 -3.2782 20 6 4.9751 2.7620 -2.5063 21 1 -1.0502 -0.0001 0.0003 22 1 3.0097 -0.9440 -0.4042 23 1 3.0093 0.1232 1.0204 24 1 4.9084 0.7310 1.0330 25 1 2.3673 3.5282 -2.0797 26 1 2.8135 3.9376 -3.7535 27 1 1.6334 2.6430 -3.4385 28 1 3.9413 0.5402 -4.5227 29 1 3.4096 2.1146 -5.1896 30 1 6.0630 1.2899 -5.1858 31 1 5.5768 3.0119 -5.1246 32 1 4.9524 3.8372 -2.6843 33 1 5.1070 2.5551 -1.4443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490995651.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:19 Heat of formation + Delta-G solvation = -32.076389 kcal Electronic energy + Delta-G solvation = -17762.490757 eV Core-core repulsion = 14982.782857 eV Total energy + Delta-G solvation = -2779.707900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.66774 -39.35927 -37.28715 -34.83830 -34.16257 -33.06291 -30.72498 -28.48516 -27.17973 -26.49608 -23.93950 -22.77322 -20.90192 -19.77648 -18.87926 -17.51994 -17.22109 -16.81007 -16.41553 -16.05615 -15.78844 -15.52666 -14.89434 -14.47831 -14.36304 -14.21501 -13.72081 -13.21389 -13.10884 -12.70455 -12.43435 -12.35252 -12.03431 -11.93126 -11.82465 -11.61595 -11.45959 -11.15430 -10.90796 -10.81743 -10.24537 -9.94114 -8.78310 -5.98689 1.49504 1.58188 1.65374 1.84936 1.88534 1.93980 2.45515 2.84061 2.98975 3.16028 3.56111 3.59808 3.91171 4.06773 4.20247 4.26594 4.38406 4.45226 4.63589 4.69868 4.71926 4.81689 4.92068 4.96668 5.04156 5.16231 5.16916 5.31543 5.54075 5.90006 5.98629 6.26508 6.65510 6.93627 7.45150 7.80168 8.40967 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.011538 C = 0.009102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.869240 B = 2426.200762 C = 3075.599536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.227 4.227 3 C 0.200 3.800 4 N -0.447 5.447 5 C -0.450 4.450 6 H 0.114 0.886 7 C -0.014 4.014 8 N -0.868 5.868 9 Si 1.102 2.898 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.254 1.254 13 C 0.467 3.533 14 O -0.634 6.634 15 C -0.092 4.092 16 C -0.130 4.130 17 C -0.141 4.141 18 C 0.044 3.956 19 O -0.408 6.408 20 C 0.051 3.949 21 H 0.260 0.740 22 H 0.067 0.933 23 H 0.102 0.898 24 H 0.265 0.735 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 6.256 -6.297 9.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.229 4.229 3 C 0.077 3.923 4 N -0.164 5.164 5 C -0.575 4.575 6 H 0.132 0.868 7 C -0.220 4.220 8 N -0.500 5.500 9 Si 0.923 3.077 10 H -0.213 1.213 11 H -0.202 1.202 12 H -0.178 1.178 13 C 0.258 3.742 14 O -0.523 6.523 15 C -0.095 4.095 16 C -0.187 4.187 17 C -0.179 4.179 18 C -0.032 4.032 19 O -0.328 6.328 20 C -0.025 4.025 21 H 0.276 0.724 22 H 0.085 0.915 23 H 0.119 0.881 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.496 6.243 -4.888 8.666 hybrid contribution -0.220 -1.216 -1.350 1.831 sum -3.716 5.027 -6.239 8.832 Atomic orbital electron populations 1.25688 0.96417 0.98951 0.99804 1.23992 0.95567 1.01806 1.01502 1.18251 0.84821 0.91059 0.98203 1.43647 1.55355 1.12006 1.05420 1.20644 1.52800 0.85463 0.98622 0.86835 1.27505 0.92588 1.04548 0.97371 1.70880 1.23115 1.14559 1.41429 0.83101 0.76759 0.73282 0.74554 1.21332 1.20241 1.17837 1.20766 0.79926 0.89822 0.83661 1.90462 1.58640 1.28334 1.74826 1.21764 0.98375 0.94576 0.94824 1.21851 0.95639 0.97493 1.03700 1.23016 0.97749 1.02526 0.94568 1.23583 0.92825 1.02179 0.84596 1.89151 1.39450 1.82555 1.21598 1.23996 0.83750 0.96707 0.98077 0.72373 0.91530 0.88057 0.92472 0.91251 0.88768 0.93176 0.91822 0.87743 0.88610 0.89485 0.89722 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.04 19.25 74.32 1.43 -5.60 16 2 C -0.23 -10.34 13.65 31.13 0.42 -9.92 16 3 C 0.20 9.97 5.15 84.57 0.44 10.41 16 4 N -0.45 -22.43 2.43 -645.40 -1.57 -23.99 16 5 C -0.45 -21.66 5.94 84.04 0.50 -21.16 16 6 H 0.11 5.06 4.15 -2.91 -0.01 5.05 16 7 C -0.01 -0.68 4.59 84.93 0.39 -0.29 16 8 N -0.87 -46.09 12.10 21.66 0.26 -45.83 16 9 Si 1.10 42.85 30.05 68.60 2.06 44.91 16 10 H -0.29 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 12 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 13 C 0.47 23.14 6.47 87.66 0.57 23.70 16 14 O -0.63 -35.02 14.94 -3.08 -0.05 -35.07 16 15 C -0.09 -3.61 0.68 -51.92 -0.04 -3.64 16 16 C -0.13 -4.21 8.03 71.98 0.58 -3.63 16 17 C -0.14 -4.79 6.31 31.61 0.20 -4.59 16 18 C 0.04 1.36 7.63 72.48 0.55 1.91 16 19 O -0.41 -16.37 11.66 -148.98 -1.74 -18.10 16 20 C 0.05 1.99 5.58 72.48 0.40 2.40 16 21 H 0.26 6.38 7.80 -4.41 -0.03 6.35 16 22 H 0.07 3.43 7.45 -2.39 -0.02 3.42 16 23 H 0.10 5.24 5.29 -2.38 -0.01 5.23 16 24 H 0.27 14.78 7.66 -92.71 -0.71 14.07 16 25 H 0.07 2.42 5.55 -2.38 -0.01 2.41 16 26 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 2.56 6.55 -2.38 -0.02 2.54 16 29 H 0.10 2.80 7.73 -2.39 -0.02 2.78 16 30 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 2.75 7.87 -2.39 -0.02 2.73 16 33 H 0.10 4.73 5.22 -2.39 -0.01 4.71 16 Total: -1.00 -64.92 273.65 5.60 -59.32 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 1.18 Total: 29.19 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 5.45 Total: -10.42 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -1.30 Total: -69.82 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -1.78 Total: -53.17 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.06 Total: 44.91 kcal Total: -64.92 5.60 -59.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490995651.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.241 kcal (2) G-P(sol) polarization free energy of solvation -64.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds