Wall clock time and date at job start Sun Mar 29 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08995 * 109.67785 * 163.61162 * 3 2 1 5 5 C 1.53293 * 109.71032 * 284.14964 * 3 2 1 6 6 O 1.42961 * 109.22265 * 172.04924 * 5 3 2 7 7 C 1.42967 * 114.16257 * 297.41295 * 6 5 3 8 8 C 1.52884 * 109.29556 * 62.45354 * 7 6 5 9 9 N 1.47144 * 109.68225 * 43.09498 * 3 2 1 10 10 C 1.34777 * 120.98528 * 9.67848 * 9 3 2 11 11 O 1.21278 * 119.99854 * 0.02562 * 10 9 3 12 12 C 1.50703 * 120.00161 * 179.97438 * 10 9 3 13 13 C 1.53000 * 109.46912 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46828 * 90.00241 * 18 16 14 20 20 H 1.48494 * 109.47178 * 209.99936 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00183 * 18 16 14 22 22 H 4.19067 * 14.98755 * 359.97438 * 4 2 1 23 23 H 1.09003 * 109.51090 * 291.96575 * 5 3 2 24 24 H 1.09000 * 109.51832 * 52.11928 * 5 3 2 25 25 H 1.09003 * 109.51506 * 182.50360 * 7 6 5 26 26 H 1.08994 * 109.51472 * 302.60797 * 7 6 5 27 27 H 1.08998 * 109.61711 * 188.11372 * 8 7 6 28 28 H 1.08997 * 109.52388 * 67.69596 * 8 7 6 29 29 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 30 30 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 31 31 H 1.09001 * 109.47194 * 299.99742 * 13 12 10 32 32 H 1.08992 * 109.47399 * 59.99914 * 13 12 10 33 33 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0126 0.9854 -0.2896 5 6 3.1632 -0.3519 1.3993 6 8 4.5806 -0.5304 1.3461 7 6 5.0036 -1.6087 0.5080 8 6 4.5797 -1.3245 -0.9332 9 7 3.1420 -1.0108 -0.9466 10 6 2.3035 -1.6357 -1.7969 11 8 1.1210 -1.3667 -1.7895 12 6 2.8356 -2.6677 -2.7575 13 6 1.6854 -3.2184 -3.6030 14 6 2.2174 -4.2509 -4.5632 15 1 3.2706 -4.4900 -4.5700 16 6 1.3596 -4.8902 -5.4330 17 7 0.0771 -4.5993 -5.4243 18 14 2.0191 -6.1695 -6.6237 19 1 1.9732 -7.5097 -5.9857 20 1 1.1860 -6.1777 -7.8529 21 1 3.4224 -5.8382 -6.9790 22 1 -1.0500 -0.0011 -0.0002 23 1 2.9238 0.4565 2.0903 24 1 2.6925 -1.2742 1.7398 25 1 6.0882 -1.7045 0.5576 26 1 4.5403 -2.5357 0.8458 27 1 4.7697 -2.2026 -1.5503 28 1 5.1443 -0.4754 -1.3182 29 1 3.2974 -3.4812 -2.1979 30 1 3.5781 -2.2082 -3.4099 31 1 0.9427 -3.6778 -2.9508 32 1 1.2240 -2.4048 -4.1626 33 1 -0.5265 -5.0493 -6.0359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491254025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:00 Heat of formation + Delta-G solvation = -14.325574 kcal Electronic energy + Delta-G solvation = -16776.831542 eV Core-core repulsion = 13997.893375 eV Total energy + Delta-G solvation = -2778.938167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31315 -38.12392 -34.76281 -33.97548 -33.15801 -30.83449 -30.49509 -27.88690 -25.74825 -24.43310 -22.47993 -21.26510 -19.31409 -17.88159 -16.90635 -16.45697 -16.09727 -15.68724 -15.44971 -15.11271 -14.78807 -14.41882 -13.77615 -13.33090 -13.01833 -12.29246 -12.18574 -12.14908 -11.65361 -11.17545 -11.05819 -10.94627 -10.76568 -10.60536 -10.33271 -10.10406 -9.98018 -9.57215 -9.12589 -8.42068 -8.36004 -8.32397 -5.98085 -4.02761 2.69614 3.08684 3.24402 3.31748 3.37891 3.40358 3.52968 3.72857 4.43514 4.46726 4.68871 4.87337 4.91200 5.08599 5.15484 5.36423 5.36945 5.42840 5.55808 5.63896 5.78591 6.13658 6.16715 6.20297 6.55734 6.84140 6.87330 7.65818 7.71879 7.83366 8.04565 8.04921 8.35876 8.71004 9.05535 9.60918 11.12877 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035060 B = 0.005873 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.445517 B = 4766.756793 C = 5444.386714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.189 4.189 3 C 0.230 3.770 4 H 0.093 0.907 5 C 0.059 3.941 6 O -0.378 6.378 7 C 0.044 3.956 8 C 0.076 3.924 9 N -0.629 5.629 10 C 0.510 3.490 11 O -0.507 6.507 12 C -0.128 4.128 13 C 0.038 3.962 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.213 0.787 23 H 0.107 0.893 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 7.919 12.700 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.190 4.190 3 C 0.127 3.873 4 H 0.111 0.889 5 C -0.018 4.018 6 O -0.296 6.296 7 C -0.034 4.034 8 C -0.047 4.047 9 N -0.368 5.368 10 C 0.300 3.700 11 O -0.380 6.380 12 C -0.168 4.168 13 C 0.001 3.999 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.230 0.770 23 H 0.125 0.875 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.446 8.120 12.683 17.266 hybrid contribution -0.003 -0.909 -0.933 1.302 sum 8.443 7.211 11.750 16.167 Atomic orbital electron populations 1.24592 0.95530 0.98484 0.99107 1.21776 0.93169 1.02328 1.01732 1.18435 0.85504 0.92968 0.90430 0.88913 1.22955 0.81409 1.02432 0.95039 1.87955 1.21586 1.52671 1.67437 1.22987 1.00898 0.90003 0.89484 1.22342 0.81114 1.03114 0.98178 1.48547 1.08363 1.41714 1.38143 1.21646 0.86295 0.81724 0.80296 1.90787 1.16092 1.63309 1.67801 1.21919 1.02770 0.95493 0.96576 1.18899 0.91551 0.95821 0.93668 1.21208 0.94300 1.22000 1.19081 0.92620 1.25024 0.94840 0.97088 0.97390 1.69995 1.02804 1.42263 1.37757 0.86588 0.78844 0.81858 0.80643 1.20657 1.21198 1.19864 0.76967 0.87453 0.92156 0.87401 0.92340 0.87771 0.90612 0.90388 0.90250 0.95885 0.95840 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 17.79 29.55 0.53 -2.06 16 2 C -0.19 -3.16 10.08 -37.12 -0.37 -3.53 16 3 C 0.23 3.25 3.52 -70.21 -0.25 3.01 16 4 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 5 C 0.06 0.68 6.25 37.31 0.23 0.92 16 6 O -0.38 -4.33 10.74 -35.23 -0.38 -4.71 16 7 C 0.04 0.43 6.97 37.10 0.26 0.69 16 8 C 0.08 0.85 6.51 -3.74 -0.02 0.83 16 9 N -0.63 -9.73 3.03 -168.18 -0.51 -10.24 16 10 C 0.51 10.19 7.61 -10.98 -0.08 10.10 16 11 O -0.51 -11.99 12.07 5.56 0.07 -11.92 16 12 C -0.13 -2.61 4.01 -27.88 -0.11 -2.73 16 13 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 14 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 18 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H 0.21 2.81 7.80 -54.09 -0.42 2.39 16 23 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 25 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.10 1.11 6.05 -51.93 -0.31 0.80 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.45 7.65 -51.93 -0.40 1.05 16 30 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 31 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -34.76 282.18 -5.67 -40.44 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.47 Total: -2.13 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.35 Total: -5.53 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.23 Total: -36.99 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.31 Total: -16.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.76 -5.67 -40.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491254025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.113 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds