Wall clock time and date at job start Sun Mar 29 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08995 * 109.67785 * 163.61162 * 3 2 1 5 5 C 1.53293 * 109.71032 * 284.14964 * 3 2 1 6 6 O 1.42961 * 109.22265 * 172.04924 * 5 3 2 7 7 C 1.42967 * 114.16257 * 297.41295 * 6 5 3 8 8 C 1.52884 * 109.29556 * 62.45354 * 7 6 5 9 9 N 1.47144 * 109.68225 * 43.09498 * 3 2 1 10 10 C 1.34777 * 120.98528 * 9.67848 * 9 3 2 11 11 O 1.21278 * 119.99854 * 0.02562 * 10 9 3 12 12 C 1.50703 * 120.00161 * 179.97438 * 10 9 3 13 13 C 1.53000 * 109.46912 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46828 * 90.00241 * 18 16 14 20 20 H 1.48494 * 109.47178 * 209.99936 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00183 * 18 16 14 22 22 H 4.19067 * 14.98755 * 359.97438 * 4 2 1 23 23 H 1.09003 * 109.51090 * 291.96575 * 5 3 2 24 24 H 1.09000 * 109.51832 * 52.11928 * 5 3 2 25 25 H 1.09003 * 109.51506 * 182.50360 * 7 6 5 26 26 H 1.08994 * 109.51472 * 302.60797 * 7 6 5 27 27 H 1.08998 * 109.61711 * 188.11372 * 8 7 6 28 28 H 1.08997 * 109.52388 * 67.69596 * 8 7 6 29 29 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 30 30 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 31 31 H 1.09001 * 109.47194 * 299.99742 * 13 12 10 32 32 H 1.08992 * 109.47399 * 59.99914 * 13 12 10 33 33 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0126 0.9854 -0.2896 5 6 3.1632 -0.3519 1.3993 6 8 4.5806 -0.5304 1.3461 7 6 5.0036 -1.6087 0.5080 8 6 4.5797 -1.3245 -0.9332 9 7 3.1420 -1.0108 -0.9466 10 6 2.3035 -1.6357 -1.7969 11 8 1.1210 -1.3667 -1.7895 12 6 2.8356 -2.6677 -2.7575 13 6 1.6854 -3.2184 -3.6030 14 6 2.2174 -4.2509 -4.5632 15 1 3.2706 -4.4900 -4.5700 16 6 1.3596 -4.8902 -5.4330 17 7 0.0771 -4.5993 -5.4243 18 14 2.0191 -6.1695 -6.6237 19 1 1.9732 -7.5097 -5.9857 20 1 1.1860 -6.1777 -7.8529 21 1 3.4224 -5.8382 -6.9790 22 1 -1.0500 -0.0011 -0.0002 23 1 2.9238 0.4565 2.0903 24 1 2.6925 -1.2742 1.7398 25 1 6.0882 -1.7045 0.5576 26 1 4.5403 -2.5357 0.8458 27 1 4.7697 -2.2026 -1.5503 28 1 5.1443 -0.4754 -1.3182 29 1 3.2974 -3.4812 -2.1979 30 1 3.5781 -2.2082 -3.4099 31 1 0.9427 -3.6778 -2.9508 32 1 1.2240 -2.4048 -4.1626 33 1 -0.5265 -5.0493 -6.0359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491254025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:00 Heat of formation + Delta-G solvation = -38.801057 kcal Electronic energy + Delta-G solvation = -16777.892878 eV Core-core repulsion = 13997.893375 eV Total energy + Delta-G solvation = -2779.999503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54536 -39.35697 -36.02767 -35.66930 -34.73574 -32.76084 -31.54196 -29.13669 -27.54987 -25.52673 -24.02956 -22.67982 -20.67929 -19.34149 -18.52042 -17.64016 -17.47295 -16.90894 -16.78168 -16.46575 -16.04130 -15.93246 -15.18839 -14.85439 -14.25095 -14.02549 -13.87953 -13.40040 -13.04690 -12.82687 -12.54116 -12.44590 -12.25379 -11.95082 -11.88984 -11.57822 -11.33394 -11.28095 -11.26700 -10.58236 -9.86031 -9.57173 -8.19374 -6.33790 1.41220 1.44424 1.47239 1.55503 1.64594 1.91689 2.33826 2.43545 2.78747 3.13859 3.35972 3.66538 3.88712 3.97231 4.11212 4.22215 4.27887 4.42490 4.49133 4.57398 4.66876 4.82650 4.92481 4.98360 5.06729 5.39901 5.49010 5.59788 5.82803 6.01954 6.15307 6.29953 6.80727 6.84638 7.22610 7.36866 8.93393 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035060 B = 0.005873 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.445517 B = 4766.756793 C = 5444.386714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.208 4.208 3 C 0.221 3.779 4 H 0.110 0.890 5 C 0.070 3.930 6 O -0.381 6.381 7 C 0.044 3.956 8 C 0.067 3.933 9 N -0.621 5.621 10 C 0.505 3.495 11 O -0.558 6.558 12 C -0.114 4.114 13 C 0.045 3.955 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.974 3.026 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.254 1.254 22 H 0.230 0.770 23 H 0.132 0.868 24 H 0.051 0.949 25 H 0.144 0.856 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.103 0.897 31 H -0.020 1.020 32 H -0.020 1.020 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.225 7.534 13.064 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.209 4.209 3 C 0.119 3.881 4 H 0.127 0.873 5 C -0.008 4.008 6 O -0.299 6.299 7 C -0.033 4.033 8 C -0.055 4.055 9 N -0.357 5.357 10 C 0.296 3.704 11 O -0.435 6.435 12 C -0.154 4.154 13 C 0.008 3.992 14 C -0.581 4.581 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.177 1.177 22 H 0.247 0.753 23 H 0.150 0.850 24 H 0.069 0.931 25 H 0.161 0.839 26 H 0.073 0.927 27 H 0.131 0.869 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.121 0.879 31 H -0.002 1.002 32 H -0.002 1.002 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.609 7.751 13.086 19.133 hybrid contribution -0.957 -0.736 -1.004 1.570 sum 10.652 7.015 12.082 17.568 Atomic orbital electron populations 1.25298 0.96665 0.98600 0.99262 1.22538 0.94481 1.02251 1.01634 1.18834 0.84267 0.93314 0.91709 0.87288 1.22910 0.81515 1.02888 0.93494 1.87969 1.21050 1.53214 1.67632 1.23168 1.02909 0.89311 0.87897 1.22733 0.78420 1.04471 0.99829 1.48497 1.09715 1.40741 1.36787 1.21494 0.86041 0.81959 0.80941 1.90772 1.18214 1.65008 1.69523 1.21662 1.00451 0.96665 0.96622 1.18663 0.92824 0.94302 0.93426 1.21708 0.95371 1.21936 1.19045 0.90461 1.26147 0.94942 0.99677 0.99652 1.70180 1.04679 1.43981 1.39031 0.85313 0.78842 0.78551 0.77495 1.19668 1.21269 1.17744 0.75335 0.85027 0.93112 0.83866 0.92723 0.86914 0.88461 0.87926 0.87906 1.00151 1.00159 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.07 17.79 74.32 1.32 -4.75 16 2 C -0.21 -7.01 10.08 31.13 0.31 -6.70 16 3 C 0.22 5.98 3.52 43.16 0.15 6.13 16 4 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 5 C 0.07 1.45 6.25 72.08 0.45 1.90 16 6 O -0.38 -7.44 10.74 -148.98 -1.60 -9.04 16 7 C 0.04 0.70 6.97 71.94 0.50 1.20 16 8 C 0.07 1.29 6.51 86.22 0.56 1.85 16 9 N -0.62 -18.28 3.03 -804.40 -2.43 -20.71 16 10 C 0.51 20.27 7.61 87.66 0.67 20.93 16 11 O -0.56 -27.49 12.07 -3.02 -0.04 -27.52 16 12 C -0.11 -4.62 4.01 29.85 0.12 -4.50 16 13 C 0.05 2.55 4.26 29.85 0.13 2.68 16 14 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 15 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 16 C -0.01 -0.40 5.46 84.66 0.46 0.07 16 17 N -0.94 -59.81 13.29 21.45 0.28 -59.53 16 18 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 22 H 0.23 6.35 7.80 -4.42 -0.03 6.31 16 23 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.05 1.16 8.13 -2.39 -0.02 1.15 16 25 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.11 2.00 6.05 -2.39 -0.01 1.98 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.10 3.61 7.65 -2.39 -0.02 3.59 16 30 H 0.10 3.65 8.03 -2.39 -0.02 3.63 16 31 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 32 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 33 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -78.60 282.18 4.24 -74.36 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.09 Total: 8.10 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.91 Total: -11.77 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -2.15 Total: -80.24 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -1.64 Total: -36.56 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -78.60 4.24 -74.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491254025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.559 kcal (2) G-P(sol) polarization free energy of solvation -78.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds